Wall clock time and date at job start Mon Mar 8 2021 09:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35994 * 117.00043 * 2 1 4 4 C 1.39149 * 120.07657 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.07098 * 0.02562 * 4 3 2 6 6 C 1.42901 * 117.00042 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47024 * 180.02562 * 6 5 4 8 8 H 1.09002 * 112.85199 * 45.32775 * 7 6 5 9 9 C 1.53783 * 113.61317 * 176.53369 * 7 6 5 10 10 C 1.53772 * 87.08367 * 89.11337 * 9 7 6 11 11 O 1.42900 * 113.61439 * 270.79655 * 10 9 7 12 12 C 1.42899 * 114.00343 * 294.79821 * 11 10 9 13 13 C 1.53002 * 113.61400 * 139.98320 * 10 9 7 14 14 F 1.39896 * 109.47385 * 54.71555 * 13 10 9 15 15 F 1.39903 * 109.46995 * 174.71925 * 13 10 9 16 16 F 1.39900 * 109.47010 * 294.71511 * 13 10 9 17 17 C 1.53785 * 113.61290 * 274.13624 * 7 6 5 18 18 C 1.38564 * 119.85916 * 179.74861 * 4 3 2 19 19 C 1.38244 * 119.99335 * 0.52834 * 18 4 3 20 20 C 1.50702 * 119.92496 * 179.77231 * 19 18 4 21 21 O 1.42901 * 109.47596 * 64.71640 * 20 19 18 22 22 Si 1.86303 * 109.47010 * 184.72201 * 20 19 18 23 23 C 1.38251 * 120.15184 * 359.48833 * 19 18 4 24 24 C 1.38240 * 120.14000 * 0.23627 * 23 19 18 25 25 H 1.09002 * 109.46876 * 59.99573 * 1 2 3 26 26 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46799 * 299.99891 * 1 2 3 28 28 H 1.08998 * 109.47179 * 300.00083 * 6 5 4 29 29 H 1.08996 * 109.46920 * 60.00304 * 6 5 4 30 30 H 1.08997 * 113.61001 * 203.66447 * 9 7 6 31 31 H 1.09000 * 113.60953 * 334.56047 * 9 7 6 32 32 H 1.08999 * 109.47356 * 182.53034 * 12 11 10 33 33 H 1.09003 * 109.46683 * 302.52797 * 12 11 10 34 34 H 1.09000 * 109.47424 * 62.52357 * 12 11 10 35 35 H 1.08998 * 113.61307 * 25.43023 * 17 7 6 36 36 H 1.08999 * 113.61447 * 156.33520 * 17 7 6 37 37 H 1.08002 * 120.00768 * 180.27373 * 18 4 3 38 38 H 1.08998 * 109.46849 * 304.71747 * 20 19 18 39 39 H 0.96706 * 113.99558 * 60.00493 * 21 20 19 40 40 H 1.48501 * 110.00171 * 58.68114 * 22 20 19 41 41 H 1.48503 * 109.99731 * 179.97438 * 22 20 19 42 42 H 1.07994 * 119.93034 * 180.25559 * 23 19 18 43 43 H 1.08005 * 119.99977 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1796 0.1478 0.0005 6 6 5.6004 0.3008 0.0017 7 6 6.2619 -1.0789 0.0009 8 1 5.8086 -1.7652 -0.7144 9 6 7.7965 -1.0261 -0.0832 10 6 7.8002 -0.9664 1.4533 11 8 7.7357 0.3626 1.9747 12 6 8.8808 1.1620 1.6718 13 6 8.9075 -1.8037 2.0966 14 9 10.1458 -1.4251 1.5672 15 9 8.9075 -1.5933 3.4797 16 9 8.6815 -3.1586 1.8311 17 6 6.4356 -1.6796 1.4058 18 6 4.0604 2.5234 -0.0047 19 6 3.3029 3.6798 0.0005 20 6 3.9837 5.0244 0.0000 21 8 4.7070 5.1916 -1.2210 22 14 2.7030 6.3688 0.1524 23 6 1.9224 3.6058 0.0004 24 6 1.2933 2.3748 -0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.9073 0.8510 -0.8878 29 1 5.9059 0.8500 0.8922 30 1 8.2431 -1.9352 -0.4859 31 1 8.1769 -0.1209 -0.5564 32 1 8.7748 2.1407 2.1399 33 1 9.7769 0.6722 2.0527 34 1 8.9641 1.2830 0.5917 35 1 5.7181 -1.3014 2.1341 36 1 6.5108 -2.7670 1.4095 37 1 5.1387 2.5841 -0.0088 38 1 4.6735 5.0826 0.8418 39 1 4.1549 5.1511 -2.0140 40 1 1.9227 6.1877 1.4028 41 1 3.3617 7.6998 0.1536 42 1 1.3342 4.5115 0.0003 43 1 0.2147 2.3196 -0.0007 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34849_17321602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:59:46 Heat of formation + Delta-G solvation = -228.704814 kcal Electronic energy + Delta-G solvation = -32437.679539 eV Core-core repulsion = 27423.495464 eV Total energy + Delta-G solvation = -5014.184075 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.127 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.29206 -48.82323 -48.76196 -41.87652 -41.25903 -39.39326 -38.86767 -37.19895 -36.79395 -31.98070 -31.53982 -30.28676 -28.53151 -28.21050 -27.38014 -26.79128 -26.09333 -23.88479 -22.96591 -22.41806 -20.62404 -19.89437 -19.59063 -19.46107 -19.26047 -18.39535 -18.05897 -17.34944 -17.27483 -17.01698 -16.51551 -16.35216 -16.12658 -15.95630 -15.81102 -15.68645 -15.66439 -15.58336 -15.39970 -15.20805 -14.98389 -14.93024 -14.59844 -14.48554 -14.28411 -14.01246 -13.79483 -13.34145 -13.26082 -13.16147 -12.95802 -12.70216 -12.44664 -12.30118 -12.11130 -11.96657 -11.94057 -11.80782 -11.76760 -11.60019 -10.83179 -10.43301 -9.76587 -8.85969 -4.98745 0.19758 0.30062 1.32618 1.49687 1.65910 1.97540 2.02098 2.07812 2.33689 2.52977 2.58567 2.59959 2.86414 3.28229 3.36210 3.46247 3.50319 3.66435 3.71527 3.86309 3.97800 4.18026 4.21792 4.23115 4.25227 4.30610 4.36066 4.41173 4.42886 4.46758 4.48806 4.51513 4.61459 4.66609 4.68553 4.76804 4.77574 4.80198 5.01389 5.03142 5.17336 5.38760 5.62425 5.68064 6.07667 6.56966 6.77820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.086 3.914 4 C 0.083 3.917 5 O -0.319 6.319 6 C 0.069 3.931 7 C -0.093 4.093 8 H 0.112 0.888 9 C -0.132 4.132 10 C 0.036 3.964 11 O -0.347 6.347 12 C 0.004 3.996 13 C 0.433 3.567 14 F -0.183 7.183 15 F -0.188 7.188 16 F -0.176 7.176 17 C -0.113 4.113 18 C -0.152 4.152 19 C -0.121 4.121 20 C -0.071 4.071 21 O -0.555 6.555 22 Si 0.779 3.221 23 C -0.112 4.112 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.395 0.605 40 H -0.285 1.285 41 H -0.300 1.300 42 H 0.154 0.846 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 1.646 -4.615 6.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.040 3.960 4 C 0.038 3.962 5 O -0.233 6.233 6 C -0.006 4.006 7 C -0.111 4.111 8 H 0.130 0.870 9 C -0.169 4.169 10 C -0.006 4.006 11 O -0.265 6.265 12 C -0.092 4.092 13 C 0.379 3.621 14 F -0.165 7.165 15 F -0.170 7.170 16 F -0.157 7.157 17 C -0.150 4.150 18 C -0.170 4.170 19 C -0.122 4.122 20 C -0.181 4.181 21 O -0.363 6.363 22 Si 0.685 3.315 23 C -0.129 4.129 24 C -0.185 4.185 25 H 0.089 0.911 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.245 0.755 40 H -0.212 1.212 41 H -0.228 1.228 42 H 0.172 0.828 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.978 2.014 -3.614 5.740 hybrid contribution 1.135 -0.438 0.739 1.424 sum -2.843 1.576 -2.875 4.340 Atomic orbital electron populations 1.23359 0.76473 1.05434 1.02484 1.86154 1.23257 1.26211 1.88934 1.18602 0.89364 0.86064 1.01966 1.18488 0.88710 0.86362 1.02676 1.86092 1.19393 1.28751 1.89066 1.22819 0.77458 0.97594 1.02738 1.22019 0.94954 0.96206 0.97949 0.86963 1.23616 0.95746 1.06707 0.90819 1.24227 0.94806 0.85262 0.96314 1.88074 1.42068 1.19778 1.76571 1.23289 0.87389 0.95992 1.02489 1.21492 0.83809 0.79838 0.76968 1.93176 1.46338 1.90820 1.86126 1.93187 1.96671 1.94684 1.32431 1.93172 1.94423 1.34491 1.93613 1.23359 0.91708 1.01507 0.98452 1.20993 1.00851 0.90209 1.04992 1.20154 0.93864 0.95394 1.02799 1.25158 1.03253 0.99578 0.90064 1.86460 1.38830 1.95184 1.15796 0.93724 0.78742 0.73494 0.85569 1.20955 0.93298 0.97897 1.00795 1.21330 1.01402 0.90521 1.05224 0.91090 0.87044 0.91590 0.90659 0.90621 0.85660 0.87517 0.87208 0.93417 0.91058 0.89618 0.85672 0.84289 0.87827 0.75486 1.21235 1.22786 0.82847 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -2.00 10.28 -79.62 -0.82 -2.82 16 3 C 0.09 0.46 6.70 22.57 0.15 0.61 16 4 C 0.08 0.54 6.70 22.57 0.15 0.69 16 5 O -0.32 -2.24 9.92 -79.60 -0.79 -3.03 16 6 C 0.07 0.07 4.34 71.98 0.31 0.38 16 7 C -0.09 0.17 4.19 -10.26 -0.04 0.13 16 8 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 9 C -0.13 0.56 6.52 31.12 0.20 0.76 16 10 C 0.04 0.02 0.85 -10.18 -0.01 0.01 16 11 O -0.35 -0.76 8.34 -148.98 -1.24 -2.00 16 12 C 0.00 -0.01 10.43 113.37 1.18 1.18 16 13 C 0.43 1.54 2.51 71.98 0.18 1.72 16 14 F -0.18 -0.66 15.24 44.97 0.69 0.02 16 15 F -0.19 -1.45 17.09 44.97 0.77 -0.68 16 16 F -0.18 -0.60 15.82 44.97 0.71 0.11 16 17 C -0.11 0.02 6.92 31.21 0.22 0.24 16 18 C -0.15 -0.54 8.67 22.35 0.19 -0.34 16 19 C -0.12 -0.10 5.35 -19.86 -0.11 -0.20 16 20 C -0.07 0.05 2.80 71.24 0.20 0.25 16 21 O -0.55 0.28 12.83 -148.98 -1.91 -1.64 16 22 Si 0.78 -2.22 29.80 68.60 2.04 -0.17 16 23 C -0.11 0.16 8.66 22.27 0.19 0.36 16 24 C -0.17 0.02 9.04 22.35 0.20 0.22 16 25 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 26 H 0.11 -0.63 8.14 -2.39 -0.02 -0.64 16 27 H 0.07 -0.36 7.66 -2.39 -0.02 -0.37 16 28 H 0.08 -0.10 7.65 -2.39 -0.02 -0.12 16 29 H 0.08 0.17 5.63 -2.39 -0.01 0.15 16 30 H 0.13 -0.82 8.06 -2.39 -0.02 -0.84 16 31 H 0.11 -0.69 6.70 -2.39 -0.02 -0.71 16 32 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.05 -0.02 6.25 -2.39 -0.01 -0.03 16 34 H 0.07 -0.38 6.76 -2.39 -0.02 -0.40 16 35 H 0.09 0.22 8.10 -2.39 -0.02 0.20 16 36 H 0.13 -0.29 7.01 -2.39 -0.02 -0.31 16 37 H 0.14 0.30 6.30 -2.91 -0.02 0.28 16 38 H 0.10 0.08 7.96 -2.39 -0.02 0.06 16 39 H 0.40 -3.33 8.70 -74.05 -0.64 -3.97 16 40 H -0.29 -0.55 7.11 99.48 0.71 0.15 16 41 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 42 H 0.15 -1.05 4.89 -2.91 -0.01 -1.07 16 43 H 0.16 -0.94 6.30 -2.91 -0.02 -0.96 16 Total: 0.00 -17.75 357.09 4.06 -13.69 By element: Atomic # 1 Polarization: -11.01 SS G_CDS: 0.47 Total: -10.54 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.14 Total: 7.06 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -4.76 Total: -9.48 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 2.17 Total: -0.55 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.04 Total: -0.17 kcal Total: -17.75 4.06 -13.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_17321602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.015 kcal (2) G-P(sol) polarization free energy of solvation -17.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds