Wall clock time and date at job start Mon Mar 8 2021 08:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 116.99728 * 2 1 4 4 C 1.38524 * 120.07258 * 0.02610 * 3 2 1 5 5 C 1.38277 * 119.99944 * 179.97438 * 4 3 2 6 6 C 1.38210 * 120.14810 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.92715 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.46710 * 120.00265 * 7 6 5 9 9 Si 1.86295 * 109.47223 * 0.02562 * 7 6 5 10 10 H 1.48497 * 109.47483 * 59.99573 * 9 7 6 11 11 H 1.48501 * 109.46974 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46682 * 299.99318 * 9 7 6 13 13 C 1.38292 * 120.14334 * 359.76849 * 6 5 4 14 14 C 1.38517 * 120.00018 * 0.50805 * 13 6 5 15 15 O 1.35987 * 120.07682 * 179.74491 * 14 13 6 16 16 C 1.42905 * 116.99717 * 359.72472 * 15 14 13 17 17 C 1.50701 * 109.47046 * 180.02562 * 16 15 14 18 18 C 1.38234 * 120.00243 * 89.99998 * 17 16 15 19 19 C 1.38234 * 120.00240 * 180.02562 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.26327 * 19 18 17 21 21 Si 1.86796 * 120.00338 * 179.72477 * 20 19 18 22 22 C 1.86298 * 109.47345 * 89.99399 * 21 20 19 23 23 C 1.86292 * 109.47215 * 209.99657 * 21 20 19 24 24 C 1.86304 * 109.46695 * 329.99459 * 21 20 19 25 25 C 1.38238 * 119.99752 * 359.47832 * 20 19 18 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 20 19 27 27 H 1.08999 * 109.47290 * 299.99593 * 1 2 3 28 28 H 1.08995 * 109.47124 * 60.00236 * 1 2 3 29 29 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00018 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.93037 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47454 * 239.99554 * 7 6 5 33 33 H 0.96697 * 114.00254 * 299.99333 * 8 7 6 34 34 H 1.08002 * 119.99949 * 180.25228 * 13 6 5 35 35 H 1.08996 * 109.47095 * 59.99943 * 16 15 14 36 36 H 1.08999 * 109.47350 * 299.99879 * 16 15 14 37 37 H 1.07999 * 119.99751 * 359.97438 * 18 17 16 38 38 H 1.08002 * 119.99744 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47461 * 60.00145 * 22 21 20 40 40 H 1.08995 * 109.47041 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.46941 * 300.00096 * 22 21 20 42 42 H 1.08997 * 109.47556 * 59.99827 * 23 21 20 43 43 H 1.09003 * 109.47107 * 179.97438 * 23 21 20 44 44 H 1.09001 * 109.47298 * 299.99936 * 23 21 20 45 45 H 1.09004 * 109.47045 * 60.00345 * 24 21 20 46 46 H 1.09003 * 109.47110 * 180.02562 * 24 21 20 47 47 H 1.09000 * 109.47158 * 300.00133 * 24 21 20 48 48 H 1.07999 * 119.99927 * 180.24100 * 25 20 19 49 49 H 1.08001 * 120.00310 * 179.72165 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3745 0.0005 5 6 1.9226 3.6058 0.0011 6 6 3.3027 3.6800 0.0016 7 6 3.9833 5.0245 0.0028 8 8 4.7991 5.1443 1.1700 9 14 2.6968 6.3718 0.0040 10 1 1.8486 6.2453 1.2164 11 1 3.3675 7.6967 0.0046 12 1 1.8487 6.2475 -1.2087 13 6 4.0604 2.5231 0.0064 14 6 3.4363 1.2864 0.0001 15 8 4.1799 0.1479 -0.0004 16 6 5.6007 0.3009 -0.0003 17 6 6.2523 -1.0579 -0.0016 18 6 6.5511 -1.6801 -1.1992 19 6 7.1484 -2.9268 -1.2004 20 6 7.4418 -3.5537 -0.0038 21 14 8.2418 -5.2417 -0.0053 22 6 10.0950 -5.0507 -0.0011 23 6 7.7110 -6.1818 1.5129 24 6 7.7173 -6.1761 -1.5293 25 6 7.1479 -2.9292 1.1939 26 6 6.5507 -1.6825 1.1950 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2147 2.3193 0.0006 31 1 1.3344 4.5115 0.0019 32 1 4.6063 5.1172 -0.8869 33 1 4.3100 5.0715 2.0009 34 1 5.1387 2.5838 0.0110 35 1 5.9069 0.8503 0.8899 36 1 5.9070 0.8511 -0.8900 37 1 6.3172 -1.1926 -2.1341 38 1 7.3814 -3.4130 -2.1362 39 1 10.4020 -4.5040 0.8905 40 1 10.5618 -6.0356 -0.0025 41 1 10.4055 -4.5006 -0.8895 42 1 6.6268 -6.2936 1.5105 43 1 8.1775 -7.1670 1.5118 44 1 8.0179 -5.6351 2.4046 45 1 8.0279 -5.6260 -2.4177 46 1 8.1837 -7.1612 -1.5300 47 1 6.6330 -6.2878 -1.5318 48 1 7.3807 -3.4173 2.1288 49 1 6.3169 -1.1965 2.1308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_34849_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:47:03 Heat of formation + Delta-G solvation = -90.936540 kcal Electronic energy + Delta-G solvation = -27333.769279 eV Core-core repulsion = 23543.255879 eV Total energy + Delta-G solvation = -3790.513400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76514 -40.29634 -39.30780 -38.83821 -36.95366 -33.22345 -31.89467 -31.81871 -31.17016 -29.43931 -28.61064 -28.29778 -28.26891 -27.38210 -26.09894 -23.60045 -23.49704 -22.58424 -21.88037 -19.68903 -18.47463 -18.41133 -17.60879 -17.27979 -17.14761 -16.53107 -16.14725 -16.13577 -15.90259 -15.88230 -15.43766 -15.17044 -14.89458 -14.34911 -14.32474 -14.07259 -14.04780 -13.88413 -13.74326 -13.58762 -13.50546 -13.28078 -13.14080 -13.11534 -13.03082 -12.96888 -12.54129 -12.34590 -12.25338 -12.19149 -12.04289 -12.01852 -11.81749 -11.59589 -10.92337 -10.78527 -10.76093 -10.44122 -9.82456 -9.80698 -9.69557 -8.92442 0.14507 0.15215 0.22809 0.50872 1.17803 1.47451 1.52986 1.83124 1.91731 1.99197 2.02398 2.28030 2.29410 2.52851 2.66544 3.00744 3.46657 3.63358 3.67587 3.79300 3.82379 3.90202 4.07665 4.15423 4.20744 4.22146 4.32984 4.35398 4.36913 4.51423 4.58383 4.63631 4.69658 4.69982 4.84802 4.84912 4.88612 4.89289 4.89523 4.90983 4.96766 4.99046 5.09891 5.14695 5.31639 5.39112 5.55541 5.56404 5.59086 5.59109 5.68089 5.70225 6.00856 6.11428 6.51052 6.68884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.085 3.915 4 C -0.165 4.165 5 C -0.125 4.125 6 C -0.118 4.118 7 C -0.078 4.078 8 O -0.552 6.552 9 Si 0.986 3.014 10 H -0.249 1.249 11 H -0.276 1.276 12 H -0.255 1.255 13 C -0.148 4.148 14 C 0.082 3.918 15 O -0.319 6.319 16 C 0.100 3.900 17 C -0.103 4.103 18 C -0.123 4.123 19 C -0.103 4.103 20 C -0.374 4.374 21 Si 1.127 2.873 22 C -0.460 4.460 23 C -0.462 4.462 24 C -0.462 4.462 25 C -0.103 4.103 26 C -0.123 4.123 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.161 0.839 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.389 0.611 34 H 0.147 0.853 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.141 0.859 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.141 0.859 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -0.278 0.139 1.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.039 3.961 4 C -0.184 4.184 5 C -0.143 4.143 6 C -0.119 4.119 7 C -0.188 4.188 8 O -0.360 6.360 9 Si 0.810 3.190 10 H -0.173 1.173 11 H -0.201 1.201 12 H -0.179 1.179 13 C -0.167 4.167 14 C 0.036 3.964 15 O -0.234 6.234 16 C 0.025 3.975 17 C -0.103 4.103 18 C -0.141 4.141 19 C -0.121 4.121 20 C -0.413 4.413 21 Si 1.314 2.686 22 C -0.567 4.567 23 C -0.570 4.570 24 C -0.570 4.570 25 C -0.121 4.121 26 C -0.141 4.141 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.238 0.762 34 H 0.165 0.835 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.158 0.842 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.188 0.122 -0.300 1.231 hybrid contribution -0.370 0.062 0.334 0.502 sum -1.557 0.184 0.034 1.569 Atomic orbital electron populations 1.23352 0.76489 1.05430 1.02451 1.86167 1.23280 1.26305 1.88967 1.18608 0.89440 0.85948 1.02110 1.21270 1.01250 0.90550 1.05326 1.20979 0.93895 0.97918 1.01534 1.20186 0.93476 0.95873 1.02322 1.25050 1.02969 0.98689 0.92120 1.86477 1.37897 1.95437 1.16144 0.85170 0.76318 0.76117 0.81422 1.17303 1.20130 1.17880 1.21015 1.01139 0.89805 1.04718 1.18562 0.88653 0.86502 1.02648 1.86231 1.19103 1.28961 1.89058 1.21731 0.77603 0.95177 1.02959 1.19629 1.00351 0.95881 0.94459 1.21371 0.98953 0.96340 0.97426 1.21395 0.97052 0.94286 0.99360 1.28120 1.03806 1.15658 0.93730 0.77179 0.64858 0.60423 0.66129 1.26254 1.21100 1.04884 1.04472 1.26279 1.05838 1.09105 1.15737 1.26280 1.05806 1.09052 1.15816 1.21396 0.97046 0.94300 0.99350 1.21371 0.98943 0.96317 0.97442 0.91344 0.91383 0.87025 0.82186 0.84091 0.85799 0.76207 0.83547 0.90251 0.90256 0.85632 0.84169 0.91337 0.90545 0.91343 0.91482 0.90512 0.90885 0.90885 0.90513 0.91480 0.84172 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.33 -2.92 10.28 -79.70 -0.82 -3.74 16 3 C 0.08 0.66 6.70 22.57 0.15 0.81 16 4 C -0.17 -0.40 9.04 22.35 0.20 -0.20 16 5 C -0.13 -0.15 8.66 22.27 0.19 0.05 16 6 C -0.12 -0.23 5.39 -19.86 -0.11 -0.34 16 7 C -0.08 0.07 2.82 71.24 0.20 0.27 16 8 O -0.55 -0.20 12.76 -148.98 -1.90 -2.10 16 9 Si 0.99 -1.81 25.06 68.60 1.72 -0.09 16 10 H -0.25 0.54 7.11 99.48 0.71 1.24 16 11 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 12 H -0.25 0.29 7.11 99.48 0.71 1.00 16 13 C -0.15 -0.66 8.60 22.35 0.19 -0.47 16 14 C 0.08 0.70 6.70 22.57 0.15 0.85 16 15 O -0.32 -3.41 9.91 -79.56 -0.79 -4.20 16 16 C 0.10 0.51 4.87 71.24 0.35 0.85 16 17 C -0.10 -0.67 5.51 -19.86 -0.11 -0.78 16 18 C -0.12 -0.66 9.70 22.27 0.22 -0.44 16 19 C -0.10 -0.29 9.29 22.27 0.21 -0.08 16 20 C -0.37 -0.50 4.59 22.27 0.10 -0.40 16 21 Si 1.13 -5.14 12.32 68.60 0.85 -4.29 16 22 C -0.46 1.39 8.65 113.37 0.98 2.37 16 23 C -0.46 1.46 8.54 113.37 0.97 2.43 16 24 C -0.46 1.46 8.53 113.37 0.97 2.43 16 25 C -0.10 -0.29 9.29 22.27 0.21 -0.09 16 26 C -0.12 -0.66 9.70 22.27 0.22 -0.45 16 27 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.11 -0.38 8.14 -2.38 -0.02 -0.40 16 30 H 0.16 -0.48 6.30 -2.91 -0.02 -0.50 16 31 H 0.14 -0.39 4.86 -2.91 -0.01 -0.40 16 32 H 0.12 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.39 -2.25 8.70 -74.06 -0.64 -2.89 16 34 H 0.15 0.33 6.30 -2.91 -0.02 0.31 16 35 H 0.08 0.21 7.60 -2.39 -0.02 0.19 16 36 H 0.08 0.19 7.62 -2.39 -0.02 0.17 16 37 H 0.13 0.38 8.06 -2.91 -0.02 0.35 16 38 H 0.14 -0.24 7.43 -2.91 -0.02 -0.27 16 39 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 40 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 42 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 44 H 0.07 -0.26 7.69 -2.39 -0.02 -0.28 16 45 H 0.07 -0.26 7.69 -2.38 -0.02 -0.28 16 46 H 0.08 -0.30 7.96 -2.39 -0.02 -0.31 16 47 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 48 H 0.14 -0.24 7.44 -2.91 -0.02 -0.26 16 49 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 Total: 0.00 -16.73 402.95 6.31 -10.42 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: 1.05 Total: -3.91 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.20 Total: 7.91 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -3.51 Total: -10.04 kcal Atomic # 14 Polarization: -6.95 SS G_CDS: 2.56 Total: -4.38 kcal Total: -16.73 6.31 -10.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_34849_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.516 kcal (2) G-P(sol) polarization free energy of solvation -16.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds