Wall clock time and date at job start Mon Mar 8 2021 07:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.52997 * 109.47202 * 239.99470 * 2 1 3 5 5 O 1.42904 * 109.46790 * 119.99667 * 2 1 3 6 6 C 1.42895 * 113.99895 * 60.00170 * 5 2 1 7 7 H 1.08994 * 112.91148 * 18.74861 * 6 5 2 8 8 C 1.53787 * 113.61204 * 150.00156 * 6 5 2 9 9 C 1.53779 * 87.07963 * 139.97889 * 8 6 5 10 10 H 1.09001 * 113.61377 * 89.20020 * 9 8 6 11 11 C 1.52998 * 113.61250 * 220.01477 * 9 8 6 12 12 O 1.42900 * 109.47401 * 185.00015 * 11 9 8 13 13 C 1.36013 * 117.00377 * 180.02562 * 12 11 9 14 14 C 1.38831 * 120.06618 * 269.72596 * 13 12 11 15 15 F 1.35094 * 120.03782 * 0.02562 * 14 13 12 16 16 C 1.38382 * 119.92648 * 179.76709 * 14 13 12 17 17 C 1.38257 * 120.06609 * 0.48743 * 16 14 13 18 18 C 1.50700 * 119.92801 * 179.76568 * 17 16 14 19 19 O 1.42898 * 109.47162 * 120.01910 * 18 17 16 20 20 Si 1.86303 * 109.46960 * 0.02562 * 18 17 16 21 21 C 1.38246 * 120.14103 * 359.78553 * 17 16 14 22 22 C 1.38382 * 120.06919 * 359.96173 * 21 17 16 23 23 F 1.35095 * 120.02907 * 180.02562 * 22 21 17 24 24 C 1.53779 * 87.08402 * 334.56577 * 9 8 6 25 25 H 1.08998 * 109.47657 * 300.00681 * 1 2 3 26 26 H 1.09010 * 109.46818 * 60.00243 * 1 2 3 27 27 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47375 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46932 * 300.00094 * 3 2 1 30 30 H 1.08998 * 109.47388 * 59.99154 * 3 2 1 31 31 H 1.08997 * 109.47278 * 300.00536 * 4 2 1 32 32 H 1.09001 * 109.47226 * 60.00508 * 4 2 1 33 33 H 1.08998 * 109.47119 * 179.97438 * 4 2 1 34 34 H 1.08997 * 113.61028 * 254.52849 * 8 6 5 35 35 H 1.09000 * 113.61529 * 25.42988 * 8 6 5 36 36 H 1.09007 * 109.47269 * 305.00322 * 11 9 8 37 37 H 1.08998 * 109.47235 * 64.99931 * 11 9 8 38 38 H 1.07997 * 119.96225 * 180.24981 * 16 14 13 39 39 H 1.08998 * 109.47093 * 240.02086 * 18 17 16 40 40 H 0.96701 * 113.99916 * 300.00158 * 19 18 17 41 41 H 1.48501 * 110.00035 * 58.68228 * 20 18 17 42 42 H 1.48500 * 110.00102 * 179.97438 * 20 18 17 43 43 H 1.07995 * 119.96448 * 179.97438 * 21 17 16 44 44 H 1.09002 * 113.61557 * 270.88569 * 24 9 8 45 45 H 1.09004 * 113.61501 * 139.97990 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0354 1.2646 7 1 1.2512 -2.4458 0.3115 8 6 2.5836 -2.9377 2.0081 9 6 1.3666 -3.6117 2.6634 10 1 0.9744 -4.4540 2.0933 11 6 1.5710 -3.9399 4.1437 12 8 0.4397 -4.6637 4.6318 13 6 0.4615 -5.0347 5.9402 14 6 0.9989 -6.2613 6.3065 15 9 1.5014 -7.0881 5.3637 16 6 1.0240 -6.6338 7.6390 17 6 0.5056 -5.7902 8.6039 18 6 0.5297 -6.2013 10.0536 19 8 1.2858 -5.2502 10.8058 20 14 1.3166 -7.8828 10.2091 21 6 -0.0353 -4.5706 8.2417 22 6 -0.0587 -4.1901 6.9114 23 9 -0.5869 -2.9979 6.5584 24 6 0.6075 -2.2961 2.4232 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 3.1476 -3.5992 1.3505 35 1 3.2170 -2.3996 2.7133 36 1 2.4688 -4.5470 4.2607 37 1 1.6819 -3.0147 4.7090 38 1 1.4455 -7.5861 7.9250 39 1 -0.4897 -6.2402 10.4372 40 1 2.2050 -5.1629 10.5186 41 1 2.6961 -7.8508 9.6603 42 1 1.3471 -8.2994 11.6342 43 1 -0.4399 -3.9140 8.9977 44 1 0.7007 -1.5825 3.2419 45 1 -0.4238 -2.4396 2.1007 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_6672274_14598386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:58:39 Heat of formation + Delta-G solvation = -147.190263 kcal Electronic energy + Delta-G solvation = -28491.292386 eV Core-core repulsion = 24113.241595 eV Total energy + Delta-G solvation = -4378.050790 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.21052 -50.16962 -41.23731 -40.74960 -39.46739 -38.21886 -37.30168 -33.95151 -32.20106 -31.66191 -29.52297 -28.37321 -28.30762 -26.75204 -26.56054 -24.40898 -23.80082 -22.93519 -20.89981 -20.69590 -19.63398 -19.05529 -18.83666 -17.92695 -17.78130 -17.45208 -16.94792 -16.70329 -16.54981 -16.48209 -16.24043 -16.14307 -15.99612 -15.78707 -15.57203 -15.09662 -14.60114 -14.42140 -14.31578 -14.08616 -13.62677 -13.50203 -13.44811 -13.31702 -13.24503 -12.98282 -12.86393 -12.78809 -12.67340 -12.43131 -12.32301 -12.14972 -11.93845 -11.73632 -11.60201 -11.29456 -11.05947 -10.77186 -10.39328 -10.05171 -9.95818 -4.91825 -0.51790 -0.31522 1.23010 1.59784 1.80039 1.96195 2.23263 2.53908 2.74226 3.10301 3.22570 3.39182 3.45770 3.52135 3.56396 3.73070 3.76093 3.83817 3.88976 3.95467 4.05981 4.07861 4.12937 4.19911 4.31711 4.40143 4.48645 4.52744 4.55175 4.60473 4.65600 4.72458 4.73229 4.73999 4.76598 4.82325 4.89214 4.91759 4.92283 4.97193 5.09461 5.13408 5.25757 5.31163 5.31618 5.37253 6.10414 6.39000 6.44362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.382 6.382 6 C 0.062 3.938 7 H 0.103 0.897 8 C -0.122 4.122 9 C -0.103 4.103 10 H 0.109 0.891 11 C 0.075 3.925 12 O -0.333 6.333 13 C 0.020 3.980 14 C 0.109 3.891 15 F -0.126 7.126 16 C -0.139 4.139 17 C -0.057 4.057 18 C -0.078 4.078 19 O -0.542 6.542 20 Si 0.762 3.238 21 C -0.119 4.119 22 C 0.098 3.902 23 F -0.132 7.132 24 C -0.148 4.148 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.172 0.828 39 H 0.143 0.857 40 H 0.390 0.610 41 H -0.278 1.278 42 H -0.297 1.297 43 H 0.162 0.838 44 H 0.077 0.923 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -2.198 -1.008 2.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.301 6.301 6 C 0.005 3.995 7 H 0.120 0.880 8 C -0.159 4.159 9 C -0.121 4.121 10 H 0.127 0.873 11 C 0.001 3.999 12 O -0.250 6.250 13 C -0.026 4.026 14 C 0.089 3.911 15 F -0.104 7.104 16 C -0.157 4.157 17 C -0.057 4.057 18 C -0.186 4.186 19 O -0.350 6.350 20 Si 0.666 3.334 21 C -0.138 4.138 22 C 0.079 3.921 23 F -0.111 7.111 24 C -0.185 4.185 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.189 0.811 39 H 0.161 0.839 40 H 0.239 0.761 41 H -0.204 1.204 42 H -0.225 1.225 43 H 0.180 0.820 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.260 -2.497 -0.436 2.548 hybrid contribution 0.654 1.118 -0.220 1.314 sum 0.914 -1.378 -0.657 1.780 Atomic orbital electron populations 1.22447 0.95081 1.02650 1.02962 1.21694 0.93625 0.93450 0.85360 1.21795 1.01711 0.93192 1.02946 1.22444 1.01990 1.01117 0.97816 1.88011 1.74198 1.24094 1.43841 1.23645 0.95623 0.82388 0.97873 0.87953 1.23200 0.96136 0.97192 0.99374 1.22274 0.98698 0.97887 0.93270 0.87291 1.22972 0.87028 0.94949 0.94919 1.86127 1.43727 1.74692 1.20437 1.18803 1.04691 0.93869 0.85246 1.17707 0.98100 0.88568 0.86748 1.91544 1.84657 1.70169 1.64045 1.21232 1.02552 1.02283 0.89635 1.20081 0.95938 0.92965 0.96755 1.25272 1.03519 1.03176 0.86671 1.86617 1.28113 1.60882 1.59393 0.94028 0.81438 0.77528 0.80362 1.21184 1.00984 0.98239 0.93348 1.17950 0.99157 0.81963 0.93075 1.91529 1.83726 1.43001 1.92806 1.23574 0.99236 0.96364 0.99367 0.92605 0.90454 0.92154 0.92202 0.89662 0.92515 0.91818 0.90349 0.92074 0.89103 0.89379 0.91571 0.92553 0.81099 0.83924 0.76051 1.20406 1.22489 0.82008 0.90404 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.02 8.38 71.98 0.60 0.59 16 2 C 0.10 0.14 1.11 -10.79 -0.01 0.13 16 3 C -0.14 -0.07 8.84 71.98 0.64 0.57 16 4 C -0.18 0.19 8.38 71.98 0.60 0.80 16 5 O -0.38 -1.95 10.00 -148.98 -1.49 -3.44 16 6 C 0.06 0.09 2.82 31.12 0.09 0.18 16 7 H 0.10 -0.09 5.55 -2.39 -0.01 -0.10 16 8 C -0.12 0.01 7.47 31.12 0.23 0.24 16 9 C -0.10 -0.12 4.01 -10.27 -0.04 -0.16 16 10 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 11 C 0.08 0.24 5.90 71.98 0.42 0.67 16 12 O -0.33 -2.41 9.79 -93.70 -0.92 -3.33 16 13 C 0.02 0.10 5.74 22.55 0.13 0.23 16 14 C 0.11 0.25 7.31 22.45 0.16 0.41 16 15 F -0.13 -0.55 17.11 44.97 0.77 0.22 16 16 C -0.14 0.41 8.64 22.31 0.19 0.60 16 17 C -0.06 0.20 5.39 -19.86 -0.11 0.09 16 18 C -0.08 0.42 2.82 71.24 0.20 0.62 16 19 O -0.54 1.23 12.77 -148.98 -1.90 -0.67 16 20 Si 0.76 -4.44 29.78 68.60 2.04 -2.40 16 21 C -0.12 0.09 9.58 22.31 0.21 0.30 16 22 C 0.10 0.39 7.31 22.44 0.16 0.56 16 23 F -0.13 -0.99 17.11 44.97 0.77 -0.22 16 24 C -0.15 -0.38 7.46 31.12 0.23 -0.15 16 25 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16 27 H 0.06 -0.01 7.02 -2.39 -0.02 -0.03 16 28 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 -0.12 6.25 -2.39 -0.01 -0.14 16 32 H 0.08 -0.25 8.14 -2.39 -0.02 -0.26 16 33 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.09 0.10 8.10 -2.39 -0.02 0.08 16 36 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 37 H 0.06 0.20 7.84 -2.39 -0.02 0.19 16 38 H 0.17 -1.28 4.87 -2.91 -0.01 -1.30 16 39 H 0.14 -1.14 7.96 -2.39 -0.02 -1.16 16 40 H 0.39 -3.05 8.70 -74.06 -0.64 -3.70 16 41 H -0.28 0.57 7.11 99.48 0.71 1.28 16 42 H -0.30 -0.66 7.11 99.48 0.71 0.05 16 43 H 0.16 -0.46 8.06 -2.91 -0.02 -0.48 16 44 H 0.08 0.41 7.90 -2.39 -0.02 0.39 16 45 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 Total: 0.00 -12.95 373.74 3.40 -9.56 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: 0.40 Total: -5.38 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 3.72 Total: 5.66 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -4.31 Total: -7.44 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 1.54 Total: 0.00 kcal Atomic # 14 Polarization: -4.44 SS G_CDS: 2.04 Total: -2.40 kcal Total: -12.95 3.40 -9.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_14598386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.632 kcal (2) G-P(sol) polarization free energy of solvation -12.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds