Wall clock time and date at job start Mon Mar 8 2021 08:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50698 * 109.47321 * 239.99522 * 2 1 3 5 5 C 1.38258 * 119.92744 * 119.72315 * 4 2 1 6 6 C 1.38370 * 120.06841 * 179.76903 * 5 4 2 7 7 F 1.35098 * 120.03604 * 180.25293 * 6 5 4 8 8 C 1.38840 * 119.92805 * 0.51219 * 6 5 4 9 9 O 1.36008 * 120.06799 * 179.72585 * 8 6 5 10 10 C 1.42905 * 116.99914 * 270.02105 * 9 8 6 11 11 C 1.53002 * 109.47237 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.46699 * 305.00246 * 11 10 9 13 13 C 1.52995 * 109.47086 * 64.99319 * 11 10 9 14 14 C 1.52999 * 109.47415 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46822 * 300.00435 * 14 13 11 16 16 H 1.08998 * 109.47661 * 299.99455 * 15 14 13 17 17 O 1.42903 * 109.46981 * 179.97438 * 15 14 13 18 18 C 1.52994 * 109.47270 * 59.99934 * 15 14 13 19 19 C 1.52995 * 109.47319 * 184.99920 * 11 10 9 20 20 C 1.38829 * 119.86208 * 359.74432 * 8 6 5 21 21 F 1.35097 * 120.03613 * 179.97438 * 20 8 6 22 22 C 1.38247 * 119.93128 * 300.00563 * 4 2 1 23 23 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 24 24 H 1.09001 * 109.47103 * 119.99412 * 2 1 3 25 25 H 1.48504 * 110.00018 * 298.67819 * 3 2 1 26 26 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 27 27 H 1.08002 * 119.96178 * 0.02562 * 5 4 2 28 28 H 1.09003 * 109.46593 * 299.99475 * 10 9 8 29 29 H 1.08997 * 109.47031 * 59.99937 * 10 9 8 30 30 H 1.09004 * 109.47716 * 300.00398 * 13 11 10 31 31 H 1.09001 * 109.47126 * 60.00425 * 13 11 10 32 32 H 1.08995 * 109.47419 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47213 * 60.00197 * 14 13 11 34 34 H 0.96704 * 113.99868 * 60.00342 * 17 15 14 35 35 H 1.09004 * 109.47506 * 179.97438 * 18 15 14 36 36 H 1.09001 * 109.47499 * 59.99617 * 18 15 14 37 37 H 1.08998 * 109.46739 * 300.00088 * 19 11 10 38 38 H 1.08996 * 109.47372 * 59.99485 * 19 11 10 39 39 H 1.08002 * 119.96709 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7215 -0.0355 -2.1424 6 6 3.1883 -0.6864 -3.2707 7 9 3.9645 -0.0277 -4.1588 8 6 2.8537 -2.0156 -3.4918 9 8 3.3064 -2.6566 -4.6027 10 6 2.4825 -2.5943 -5.7686 11 6 3.1507 -3.3676 -6.9073 12 1 4.1581 -2.9824 -7.0658 13 6 3.2238 -4.8514 -6.5419 14 6 3.8926 -5.6247 -7.6802 15 6 3.0744 -5.4546 -8.9619 16 1 2.0671 -5.8399 -8.8038 17 8 3.6994 -6.1763 -10.0252 18 6 3.0014 -3.9707 -9.3272 19 6 2.3321 -3.1974 -8.1886 20 6 2.0558 -2.6890 -2.5768 21 9 1.7277 -3.9823 -2.7887 22 6 1.5965 -2.0341 -1.4477 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5137 0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5614 2.4679 1.2084 27 1 2.9779 0.9996 -1.9718 28 1 1.5106 -3.0371 -5.5507 29 1 2.3497 -1.5537 -6.0645 30 1 3.8071 -4.9727 -5.6291 31 1 2.2166 -5.2366 -6.3833 32 1 3.9443 -6.6819 -7.4202 33 1 4.8999 -5.2394 -7.8385 34 1 3.7798 -7.1260 -9.8619 35 1 2.4189 -3.8496 -10.2405 36 1 4.0087 -3.5854 -9.4854 37 1 1.3248 -3.5826 -8.0299 38 1 2.2800 -2.1403 -8.4488 39 1 0.9758 -2.5574 -0.7355 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_6672274_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:37:34 Heat of formation + Delta-G solvation = -190.272669 kcal Electronic energy + Delta-G solvation = -24916.416369 eV Core-core repulsion = 20847.572623 eV Total energy + Delta-G solvation = -4068.843746 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.19705 -50.16201 -41.09506 -40.25205 -39.19169 -37.48018 -36.66558 -32.58550 -31.85876 -31.69457 -31.25343 -27.25704 -26.04914 -24.40576 -23.82646 -22.98556 -22.36323 -20.92864 -19.61897 -19.05590 -18.81207 -18.22389 -17.77701 -17.57349 -16.94633 -16.71227 -16.50285 -16.40259 -16.23159 -16.08551 -15.77994 -15.61160 -15.49414 -14.73144 -14.57806 -14.33637 -14.06220 -13.88159 -13.45368 -13.33459 -13.28900 -13.22103 -12.82546 -12.54780 -12.34366 -12.15258 -11.94097 -11.73107 -11.68223 -11.25812 -11.07517 -10.78076 -10.73614 -10.04235 -9.94911 -4.92055 -0.50726 -0.30704 1.22917 1.59210 1.81885 1.95834 2.25736 2.57321 3.11026 3.19754 3.23218 3.45583 3.52870 3.62044 3.65534 3.75436 3.84574 4.03362 4.05590 4.13051 4.25012 4.31092 4.32476 4.41224 4.43807 4.45574 4.51281 4.54506 4.57848 4.74014 4.78202 4.92903 4.93506 5.01937 5.04878 5.11185 5.14238 5.25705 5.32945 5.40213 6.12460 6.44668 6.83453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.076 4.076 3 Si 0.759 3.241 4 C -0.057 4.057 5 C -0.140 4.140 6 C 0.107 3.893 7 F -0.127 7.127 8 C 0.022 3.978 9 O -0.332 6.332 10 C 0.066 3.934 11 C -0.082 4.082 12 H 0.076 0.924 13 C -0.106 4.106 14 C -0.146 4.146 15 C 0.102 3.898 16 H 0.063 0.937 17 O -0.590 6.590 18 C -0.112 4.112 19 C -0.103 4.103 20 C 0.101 3.899 21 F -0.130 7.130 22 C -0.118 4.118 23 H 0.390 0.610 24 H 0.143 0.857 25 H -0.278 1.278 26 H -0.297 1.297 27 H 0.170 0.830 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 1.283 1.870 2.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.185 4.185 3 Si 0.664 3.336 4 C -0.058 4.058 5 C -0.158 4.158 6 C 0.087 3.913 7 F -0.106 7.106 8 C -0.024 4.024 9 O -0.250 6.250 10 C -0.008 4.008 11 C -0.101 4.101 12 H 0.094 0.906 13 C -0.144 4.144 14 C -0.184 4.184 15 C 0.043 3.957 16 H 0.081 0.919 17 O -0.398 6.398 18 C -0.150 4.150 19 C -0.141 4.141 20 C 0.081 3.919 21 F -0.109 7.109 22 C -0.137 4.137 23 H 0.240 0.760 24 H 0.161 0.839 25 H -0.204 1.204 26 H -0.225 1.225 27 H 0.187 0.813 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.775 2.257 2.063 3.154 hybrid contribution -1.019 -0.893 -0.562 1.467 sum -1.794 1.364 1.500 2.707 Atomic orbital electron populations 1.86619 1.17680 1.80308 1.50356 1.25240 0.83928 1.11608 0.97751 0.94032 0.90461 0.71969 0.77161 1.20066 0.95963 0.93226 0.96516 1.21222 0.99810 1.02117 0.92632 1.17734 0.94764 0.88763 0.90055 1.91545 1.71974 1.80101 1.66942 1.18782 1.01421 0.91000 0.91206 1.86119 1.47232 1.73018 1.18587 1.23075 0.93564 1.00733 0.83405 1.21174 1.00416 0.95595 0.92890 0.90603 1.21448 1.01356 0.93758 0.97841 1.22216 0.99860 1.01207 0.95120 1.21898 0.95207 0.92745 0.85843 0.91915 1.86480 1.83269 1.25631 1.44424 1.21463 1.01701 0.93139 0.98699 1.21440 0.99125 1.01307 0.92187 1.17906 0.97871 0.79668 0.96494 1.91530 1.90668 1.33851 1.94830 1.21183 1.01181 0.94989 0.96364 0.76046 0.83929 1.20412 1.22507 0.81285 0.91911 0.91769 0.92008 0.91282 0.90667 0.92035 0.75708 0.90962 0.91936 0.90409 0.89988 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.59 12.77 -148.98 -1.90 -0.31 16 2 C -0.08 0.46 2.82 71.24 0.20 0.66 16 3 Si 0.76 -4.61 29.78 68.60 2.04 -2.56 16 4 C -0.06 0.24 5.39 -19.86 -0.11 0.14 16 5 C -0.14 0.48 8.64 22.31 0.19 0.68 16 6 C 0.11 0.17 7.31 22.45 0.16 0.34 16 7 F -0.13 -0.53 17.11 44.97 0.77 0.24 16 8 C 0.02 0.08 5.74 22.56 0.13 0.21 16 9 O -0.33 -1.93 9.32 -93.64 -0.87 -2.80 16 10 C 0.07 0.08 5.44 71.98 0.39 0.47 16 11 C -0.08 -0.01 2.43 -10.80 -0.03 -0.04 16 12 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 13 C -0.11 -0.06 5.10 30.59 0.16 0.09 16 14 C -0.15 -0.01 5.55 30.59 0.17 0.16 16 15 C 0.10 0.06 3.47 30.59 0.11 0.17 16 16 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 17 O -0.59 -1.81 13.32 -148.98 -1.98 -3.79 16 18 C -0.11 -0.06 5.57 30.61 0.17 0.11 16 19 C -0.10 0.23 5.21 30.61 0.16 0.39 16 20 C 0.10 0.24 7.31 22.44 0.16 0.41 16 21 F -0.13 -0.70 17.11 44.97 0.77 0.07 16 22 C -0.12 0.23 9.58 22.31 0.21 0.44 16 23 H 0.39 -3.33 8.70 -74.06 -0.64 -3.97 16 24 H 0.14 -1.21 7.96 -2.39 -0.02 -1.23 16 25 H -0.28 0.64 7.11 99.48 0.71 1.35 16 26 H -0.30 -0.60 7.11 99.48 0.71 0.11 16 27 H 0.17 -1.30 4.87 -2.91 -0.01 -1.31 16 28 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 0.21 7.82 -2.38 -0.02 0.20 16 31 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.39 -1.88 9.08 -74.05 -0.67 -2.55 16 35 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.16 -0.65 8.06 -2.91 -0.02 -0.67 16 Total: 0.00 -14.22 329.23 0.72 -13.50 By element: Atomic # 1 Polarization: -8.38 SS G_CDS: -0.19 Total: -8.57 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 2.09 Total: 4.23 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: -4.76 Total: -6.90 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 1.54 Total: 0.31 kcal Atomic # 14 Polarization: -4.61 SS G_CDS: 2.04 Total: -2.56 kcal Total: -14.22 0.72 -13.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.772 kcal (2) G-P(sol) polarization free energy of solvation -14.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds