Wall clock time and date at job start Mon Mar 8 2021 08:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.52998 * 109.46818 * 240.00640 * 2 1 3 5 5 Si 1.86297 * 109.47279 * 120.00097 * 2 1 3 6 6 C 1.86292 * 109.47167 * 300.00193 * 5 2 1 7 7 C 1.86300 * 109.47060 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.46703 * 60.00252 * 5 2 1 9 9 C 1.42902 * 113.99898 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47144 * 179.97438 * 9 8 5 11 11 O 1.42904 * 109.47143 * 64.99902 * 10 9 8 12 12 C 1.42897 * 113.99776 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46877 * 179.97438 * 12 11 10 14 14 O 1.42907 * 109.47061 * 65.00289 * 13 12 11 15 15 C 1.36014 * 116.99888 * 180.02562 * 14 13 12 16 16 C 1.38829 * 120.07281 * 89.99823 * 15 14 13 17 17 F 1.35109 * 120.03304 * 359.97438 * 16 15 14 18 18 C 1.38371 * 119.93551 * 180.02562 * 16 15 14 19 19 C 1.38257 * 120.06250 * 0.02562 * 18 16 15 20 20 C 1.50706 * 119.92477 * 179.97438 * 19 18 16 21 21 O 1.42903 * 109.47186 * 65.00469 * 20 19 18 22 22 Si 1.86302 * 109.46768 * 185.00149 * 20 19 18 23 23 H 1.48499 * 109.47007 * 60.00227 * 22 20 19 24 24 H 1.48496 * 109.47156 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47188 * 300.00272 * 22 20 19 26 26 C 1.38244 * 120.14240 * 0.25916 * 19 18 16 27 27 C 1.38374 * 120.06882 * 359.44643 * 26 19 18 28 28 F 1.35103 * 120.03759 * 180.29487 * 27 26 19 29 29 H 1.09004 * 109.47268 * 299.99461 * 1 2 3 30 30 H 1.09005 * 109.47619 * 59.99538 * 1 2 3 31 31 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46958 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47679 * 300.00428 * 3 2 1 34 34 H 1.09006 * 109.46866 * 60.00710 * 3 2 1 35 35 H 1.08997 * 109.46897 * 299.99567 * 4 2 1 36 36 H 1.09000 * 109.47667 * 60.00076 * 4 2 1 37 37 H 1.09006 * 109.46835 * 179.97438 * 4 2 1 38 38 H 1.09007 * 109.47198 * 180.02562 * 6 5 2 39 39 H 1.09000 * 109.47071 * 299.99375 * 6 5 2 40 40 H 1.08998 * 109.47478 * 59.99905 * 6 5 2 41 41 H 1.08994 * 109.47520 * 300.00527 * 7 5 2 42 42 H 1.08997 * 109.46872 * 60.00259 * 7 5 2 43 43 H 1.09000 * 109.46720 * 180.02562 * 7 5 2 44 44 H 1.08996 * 109.47352 * 59.99227 * 9 8 5 45 45 H 1.09008 * 109.46723 * 299.99980 * 9 8 5 46 46 H 1.08997 * 109.47024 * 304.99943 * 10 9 8 47 47 H 1.09006 * 109.47152 * 184.99669 * 10 9 8 48 48 H 1.09001 * 109.47386 * 60.00068 * 12 11 10 49 49 H 1.09003 * 109.47449 * 299.99909 * 12 11 10 50 50 H 1.08996 * 109.47137 * 305.00410 * 13 12 11 51 51 H 1.09000 * 109.47405 * 185.00007 * 13 12 11 52 52 H 1.07995 * 119.96885 * 180.02562 * 18 16 15 53 53 H 1.08992 * 109.47155 * 305.00066 * 20 19 18 54 54 H 0.96698 * 113.99763 * 59.99746 * 21 20 19 55 55 H 1.08000 * 119.96796 * 179.69861 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5206 8 8 1.6073 -2.4160 1.5209 9 6 2.0285 -3.1815 2.6517 10 6 1.4627 -4.5992 2.5473 11 8 2.0311 -5.2565 1.4128 12 6 1.5671 -6.5947 1.2237 13 6 2.2376 -7.1970 -0.0126 14 8 3.6433 -7.3132 0.2168 15 6 4.3926 -7.8341 -0.7918 16 6 4.9400 -6.9977 -1.7551 17 9 4.7287 -5.6647 -1.6924 18 6 5.7014 -7.5307 -2.7803 19 6 5.9167 -8.8948 -2.8459 20 6 6.7460 -9.4721 -3.9641 21 8 8.0920 -9.0060 -3.8486 22 14 6.7218 -11.3319 -3.8588 23 1 5.3231 -11.8163 -3.9789 24 1 7.5384 -11.9008 -4.9609 25 1 7.2839 -11.7612 -2.5531 26 6 5.3681 -9.7310 -1.8915 27 6 4.6109 -9.2034 -0.8604 28 9 4.0799 -10.0206 0.0753 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 -1.7488 -1.2494 36 1 1.6766 -0.2072 -2.1393 37 1 3.1299 -0.7207 -1.2496 38 1 1.8938 -0.5137 3.9322 39 1 1.8934 1.0275 3.0423 40 1 0.4400 -0.0001 3.0422 41 1 4.3770 -1.3928 0.6306 42 1 4.3776 0.1486 1.5204 43 1 4.3773 -1.3931 2.4104 44 1 1.6638 -2.7114 3.5650 45 1 3.1175 -3.2253 2.6756 46 1 0.3797 -4.5507 2.4343 47 1 1.7092 -5.1563 3.4513 48 1 0.4861 -6.5881 1.0834 49 1 1.8160 -7.1930 2.1002 50 1 2.0620 -6.5505 -0.8724 51 1 1.8187 -8.1840 -0.2087 52 1 6.1279 -6.8805 -3.5297 53 1 6.3334 -9.1570 -4.9225 54 1 8.5229 -9.2504 -3.0182 55 1 5.5341 -10.7966 -1.9483 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_6672274_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:45:25 Heat of formation + Delta-G solvation = -270.816567 kcal Electronic energy + Delta-G solvation = -35577.584469 eV Core-core repulsion = 30567.972448 eV Total energy + Delta-G solvation = -5009.612021 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 392.184 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -50.21355 -50.14959 -40.99872 -39.67977 -38.93300 -37.50583 -37.14035 -36.83187 -32.68615 -31.70989 -31.25884 -29.71851 -29.20330 -29.07050 -27.84112 -27.39061 -26.73341 -24.42625 -23.91561 -23.46942 -22.89953 -20.42188 -19.71596 -19.12554 -18.89813 -18.08706 -17.91325 -17.72643 -17.55497 -16.92501 -16.66654 -16.51109 -16.43448 -16.11300 -16.07028 -15.93303 -15.87281 -15.84950 -15.20528 -15.09074 -14.86464 -14.84565 -14.72605 -14.26816 -14.10802 -13.97151 -13.57323 -13.52406 -13.39285 -13.37910 -13.18874 -13.06244 -12.96499 -12.92875 -12.83187 -12.59316 -12.43813 -12.38323 -12.21870 -12.11371 -11.82888 -11.80112 -11.69395 -11.50777 -11.27647 -11.15048 -10.60086 -10.52091 -10.30572 -10.05347 -10.04575 -9.95430 -0.50874 -0.32043 1.12553 1.47464 1.53388 1.54153 1.79424 1.82604 1.93645 2.13479 2.26955 2.49159 2.57999 2.66446 3.12327 3.25193 3.51144 3.62553 3.82265 3.87602 4.03458 4.09421 4.11397 4.12032 4.12257 4.21124 4.28688 4.36618 4.42670 4.46540 4.48012 4.52842 4.56803 4.57962 4.64986 4.70161 4.72907 4.74244 4.77896 4.79070 4.80977 4.82472 4.82975 4.93232 4.99032 5.08303 5.08690 5.19588 5.30678 5.32847 5.39899 5.43547 5.52300 5.58245 5.63340 6.09885 6.27096 6.67572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.381 4.381 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.309 2.691 6 C -0.512 4.512 7 C -0.519 4.519 8 O -0.636 6.636 9 C 0.076 3.924 10 C 0.053 3.947 11 O -0.399 6.399 12 C 0.062 3.938 13 C 0.060 3.940 14 O -0.331 6.331 15 C 0.020 3.980 16 C 0.099 3.901 17 F -0.131 7.131 18 C -0.114 4.114 19 C -0.059 4.059 20 C -0.075 4.075 21 O -0.546 6.546 22 Si 0.973 3.027 23 H -0.252 1.252 24 H -0.269 1.269 25 H -0.249 1.249 26 C -0.153 4.153 27 C 0.108 3.892 28 F -0.127 7.127 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.090 0.910 52 H 0.168 0.832 53 H 0.142 0.858 54 H 0.392 0.608 55 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -2.330 0.535 2.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.439 2.561 6 C -0.614 4.614 7 C -0.620 4.620 8 O -0.596 6.596 9 C 0.000 4.000 10 C -0.023 4.023 11 O -0.319 6.319 12 C -0.014 4.014 13 C -0.014 4.014 14 O -0.248 6.248 15 C -0.026 4.026 16 C 0.079 3.921 17 F -0.109 7.109 18 C -0.133 4.133 19 C -0.060 4.060 20 C -0.185 4.185 21 O -0.353 6.353 22 Si 0.796 3.204 23 H -0.175 1.175 24 H -0.193 1.193 25 H -0.173 1.173 26 C -0.171 4.171 27 C 0.088 3.912 28 F -0.106 7.106 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.108 0.892 52 H 0.185 0.815 53 H 0.160 0.840 54 H 0.242 0.758 55 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.162 -3.005 -0.047 3.223 hybrid contribution -0.118 0.758 0.814 1.118 sum -1.280 -2.248 0.767 2.698 Atomic orbital electron populations 1.21521 0.93989 1.01678 1.01990 1.25881 1.00598 1.03020 1.12868 1.21597 1.01134 0.94570 1.02379 1.21508 1.00711 0.99821 0.97151 0.76334 0.62094 0.53037 0.64631 1.27008 1.07022 1.09766 1.17609 1.27151 1.26158 1.04669 1.04044 1.85386 1.79240 1.46576 1.48366 1.22295 0.99226 0.90689 0.87754 1.22851 0.98450 0.92160 0.88867 1.88007 1.68536 1.26592 1.48761 1.22631 0.98305 0.83508 0.96982 1.23125 0.78149 1.01015 0.99070 1.86182 1.20170 1.82340 1.36137 1.18807 1.00920 0.90283 0.92570 1.18021 1.00449 0.77701 0.95881 1.91554 1.93214 1.30185 1.95993 1.21227 0.97982 0.96204 0.97882 1.20186 0.97038 0.92422 0.96339 1.25088 0.83217 1.10943 0.99301 1.86537 1.23718 1.80415 1.44644 0.85337 0.81114 0.73165 0.80767 1.17538 1.19339 1.17258 1.21256 0.99581 1.02207 0.94063 1.17692 0.98297 0.86085 0.89157 1.91535 1.84351 1.71429 1.63255 0.91750 0.93265 0.92749 0.92102 0.93015 0.91490 0.93076 0.93127 0.92654 0.90789 0.90263 0.90758 0.92076 0.90331 0.91356 0.88674 0.92127 0.91476 0.90307 0.88850 0.91501 0.92081 0.89232 0.81493 0.84001 0.75795 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.26 7.85 71.98 0.56 0.30 16 2 C -0.38 -0.73 0.53 -10.79 -0.01 -0.74 16 3 C -0.14 -0.06 7.85 71.98 0.56 0.50 16 4 C -0.13 -0.56 7.85 71.98 0.56 0.00 16 5 Si 1.31 0.48 8.45 68.60 0.58 1.06 16 6 C -0.51 0.70 8.50 113.37 0.96 1.67 16 7 C -0.52 -1.20 8.50 113.37 0.96 -0.24 16 8 O -0.64 -2.56 8.52 -144.34 -1.23 -3.79 16 9 C 0.08 0.06 5.51 71.98 0.40 0.46 16 10 C 0.05 0.05 6.32 71.98 0.45 0.51 16 11 O -0.40 -2.81 10.27 -135.05 -1.39 -4.20 16 12 C 0.06 0.11 6.32 71.98 0.45 0.56 16 13 C 0.06 0.22 6.44 71.98 0.46 0.69 16 14 O -0.33 -3.02 9.75 -89.07 -0.87 -3.89 16 15 C 0.02 0.13 5.74 22.55 0.13 0.26 16 16 C 0.10 0.54 7.31 22.44 0.16 0.70 16 17 F -0.13 -1.27 17.11 44.97 0.77 -0.50 16 18 C -0.11 0.01 9.66 22.31 0.22 0.23 16 19 C -0.06 0.16 5.35 -19.86 -0.11 0.05 16 20 C -0.08 0.43 2.80 71.24 0.20 0.63 16 21 O -0.55 2.14 12.83 -148.98 -1.91 0.23 16 22 Si 0.97 -4.95 25.13 68.60 1.72 -3.23 16 23 H -0.25 1.03 7.11 99.48 0.71 1.73 16 24 H -0.27 0.36 7.11 99.48 0.71 1.07 16 25 H -0.25 1.21 7.05 99.48 0.70 1.91 16 26 C -0.15 0.17 8.64 22.30 0.19 0.36 16 27 C 0.11 0.40 7.31 22.44 0.16 0.56 16 28 F -0.13 -0.70 17.11 44.97 0.77 0.07 16 29 H 0.06 -0.02 7.79 -2.38 -0.02 -0.04 16 30 H 0.05 0.12 8.14 -2.38 -0.02 0.10 16 31 H 0.05 0.16 7.97 -2.39 -0.02 0.14 16 32 H 0.06 -0.03 7.79 -2.38 -0.02 -0.05 16 33 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.07 -0.12 7.79 -2.38 -0.02 -0.14 16 35 H 0.05 0.31 7.96 -2.39 -0.02 0.29 16 36 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.05 0.20 7.79 -2.38 -0.02 0.18 16 38 H 0.07 -0.20 7.48 -2.38 -0.02 -0.22 16 39 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 40 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 41 H 0.06 0.30 7.79 -2.39 -0.02 0.28 16 42 H 0.08 0.06 7.79 -2.39 -0.02 0.04 16 43 H 0.07 0.11 7.48 -2.39 -0.02 0.10 16 44 H 0.10 -0.48 7.21 -2.39 -0.02 -0.49 16 45 H 0.06 0.07 7.21 -2.38 -0.02 0.05 16 46 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 48 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 49 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 52 H 0.17 -0.50 8.06 -2.91 -0.02 -0.52 16 53 H 0.14 -1.21 7.96 -2.39 -0.02 -1.23 16 54 H 0.39 -3.95 8.70 -74.06 -0.64 -4.60 16 55 H 0.16 -0.73 4.85 -2.91 -0.01 -0.75 16 Total: 0.00 -16.19 453.40 5.77 -10.42 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: 0.98 Total: -2.66 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.34 Total: 6.50 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -5.40 Total: -11.66 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 1.54 Total: -0.44 kcal Atomic # 14 Polarization: -4.47 SS G_CDS: 2.30 Total: -2.17 kcal Total: -16.19 5.77 -10.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -260.395 kcal (2) G-P(sol) polarization free energy of solvation -16.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds