Wall clock time and date at job start Mon Mar 8 2021 08:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99887 * 2 1 4 4 C 1.52996 * 112.84755 * 65.99110 * 3 2 1 5 5 F 1.39904 * 109.47449 * 283.51953 * 4 3 2 6 6 F 1.39904 * 109.47248 * 43.52403 * 4 3 2 7 7 F 1.39909 * 109.47039 * 163.52279 * 4 3 2 8 8 C 1.53779 * 113.61586 * 294.79604 * 3 2 1 9 9 C 1.53782 * 87.07955 * 270.79955 * 8 3 2 10 10 H 1.09001 * 113.61497 * 219.93159 * 9 8 3 11 11 C 1.53005 * 113.61526 * 89.11831 * 9 8 3 12 12 O 1.42891 * 109.47193 * 176.52515 * 11 9 8 13 13 C 1.36014 * 117.00289 * 179.97438 * 12 11 9 14 14 C 1.38836 * 120.06366 * 90.00174 * 13 12 11 15 15 F 1.35097 * 120.03581 * 359.95703 * 14 13 12 16 16 C 1.38375 * 119.92589 * 179.97438 * 14 13 12 17 17 C 1.38249 * 120.07252 * 0.02562 * 16 14 13 18 18 C 1.50697 * 119.93310 * 179.97438 * 17 16 14 19 19 O 1.42893 * 109.47242 * 64.99804 * 18 17 16 20 20 Si 1.86293 * 109.47282 * 185.00126 * 18 17 16 21 21 C 1.38254 * 120.13776 * 0.25556 * 17 16 14 22 22 C 1.38371 * 120.06791 * 359.48800 * 21 17 16 23 23 F 1.35102 * 120.03758 * 180.25423 * 22 21 17 24 24 C 1.53776 * 87.17296 * 334.52443 * 9 8 3 25 25 H 1.09000 * 109.46990 * 62.52796 * 1 2 3 26 26 H 1.08998 * 109.46971 * 182.53064 * 1 2 3 27 27 H 1.09003 * 109.47022 * 302.52766 * 1 2 3 28 28 H 1.08998 * 113.61975 * 156.24992 * 8 3 2 29 29 H 1.09002 * 113.61295 * 25.34850 * 8 3 2 30 30 H 1.09007 * 109.46984 * 56.52459 * 11 9 8 31 31 H 1.09000 * 109.46417 * 296.53071 * 11 9 8 32 32 H 1.07998 * 119.96396 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.47059 * 304.99895 * 18 17 16 34 34 H 0.96699 * 114.00043 * 59.99804 * 19 18 17 35 35 H 1.48500 * 110.00200 * 179.97438 * 20 18 17 36 36 H 1.48503 * 110.00062 * 301.31768 * 20 18 17 37 37 H 1.08000 * 119.96459 * 179.74595 * 21 17 16 38 38 H 1.08998 * 113.60989 * 140.02305 * 24 9 8 39 39 H 1.09000 * 113.61624 * 270.92350 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7278 2.0815 1.2879 5 9 0.4114 2.5548 1.2681 6 9 1.9032 1.2369 2.3894 7 9 2.6106 3.1627 1.3841 8 6 1.7210 2.1086 -1.2791 9 6 2.9980 1.4842 -1.8658 10 1 3.5935 2.1810 -2.4557 11 6 2.7565 0.1543 -2.5827 12 8 3.9803 -0.3046 -3.1604 13 6 3.9394 -1.4828 -3.8386 14 6 3.6623 -1.4929 -5.1990 15 9 3.4319 -0.3323 -5.8509 16 6 3.6219 -2.6932 -5.8864 17 6 3.8567 -3.8814 -5.2199 18 6 3.8114 -5.1868 -5.9714 19 8 4.8680 -5.2198 -6.9329 20 14 4.0164 -6.5998 -4.7747 21 6 4.1272 -3.8751 -3.8641 22 6 4.1742 -2.6778 -3.1721 23 9 4.4437 -2.6719 -1.8482 24 6 3.4927 1.3230 -0.4187 25 1 -0.3633 0.4741 -0.9118 26 1 -0.3633 -1.0267 0.0454 27 1 -0.3633 0.5526 0.8665 28 1 1.7862 3.1879 -1.1412 29 1 0.8094 1.8007 -1.7912 30 1 2.0140 0.2947 -3.3684 31 1 2.3933 -0.5834 -1.8672 32 1 3.4068 -2.7018 -6.9447 33 1 2.8527 -5.2792 -6.4818 34 1 5.7520 -5.1423 -6.5487 35 1 3.9729 -7.8930 -5.5035 36 1 5.3055 -6.4682 -4.0494 37 1 4.3062 -4.8053 -3.3454 38 1 4.0104 0.3813 -0.2367 39 1 4.0415 2.1879 -0.0459 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_6672274_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:55:01 Heat of formation + Delta-G solvation = -283.364845 kcal Electronic energy + Delta-G solvation = -33049.191721 eV Core-core repulsion = 27567.949268 eV Total energy + Delta-G solvation = -5481.242452 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.16598 -50.10729 -50.06872 -48.71416 -48.59515 -41.66797 -40.83300 -39.27880 -37.57081 -37.03158 -32.30607 -31.68432 -30.44316 -28.34277 -27.56936 -26.92410 -26.39076 -24.40387 -23.44649 -22.97247 -20.73714 -19.92507 -19.53866 -19.45204 -19.22717 -19.03172 -18.76427 -17.82544 -17.46910 -17.30516 -16.92817 -16.58314 -16.56373 -16.41045 -16.22345 -16.16547 -15.82475 -15.77739 -15.71541 -15.53098 -15.45189 -15.06948 -14.81507 -14.78130 -14.53545 -14.40324 -14.24224 -14.09129 -13.82253 -13.50164 -13.35959 -13.13540 -12.91930 -12.76847 -12.50258 -12.30651 -12.05883 -11.95996 -11.74462 -11.26837 -10.87117 -10.79780 -10.04012 -9.96062 -5.11164 -0.52126 -0.31252 1.06144 1.44745 1.55474 1.74949 1.82599 1.98808 2.22004 2.52247 2.58115 2.62595 2.85824 3.05754 3.14154 3.23933 3.33383 3.35204 3.47008 3.52068 3.67719 3.77288 4.04037 4.08229 4.13346 4.20351 4.25015 4.28587 4.36335 4.37653 4.39379 4.48160 4.51224 4.57512 4.64834 4.71783 4.74264 4.87886 4.90692 5.27884 5.60718 6.14745 6.19666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.331 6.331 3 C 0.039 3.961 4 C 0.437 3.563 5 F -0.182 7.182 6 F -0.174 7.174 7 F -0.175 7.175 8 C -0.142 4.142 9 C -0.097 4.097 10 H 0.106 0.894 11 C 0.073 3.927 12 O -0.315 6.315 13 C 0.035 3.965 14 C 0.115 3.885 15 F -0.119 7.119 16 C -0.126 4.126 17 C -0.065 4.065 18 C -0.075 4.075 19 O -0.524 6.524 20 Si 0.686 3.314 21 C -0.154 4.154 22 C 0.123 3.877 23 F -0.116 7.116 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.128 0.872 34 H 0.379 0.621 35 H -0.251 1.251 36 H -0.256 1.256 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -1.608 -1.186 3.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.249 6.249 3 C -0.004 4.004 4 C 0.383 3.617 5 F -0.163 7.163 6 F -0.155 7.155 7 F -0.156 7.156 8 C -0.180 4.180 9 C -0.116 4.116 10 H 0.125 0.875 11 C -0.001 4.001 12 O -0.232 6.232 13 C -0.011 4.011 14 C 0.095 3.905 15 F -0.098 7.098 16 C -0.145 4.145 17 C -0.066 4.066 18 C -0.184 4.184 19 O -0.331 6.331 20 Si 0.587 3.413 21 C -0.172 4.172 22 C 0.103 3.897 23 F -0.094 7.094 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.146 0.854 34 H 0.227 0.773 35 H -0.175 1.175 36 H -0.180 1.180 37 H 0.169 0.831 38 H 0.119 0.881 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.704 -2.347 -1.263 3.797 hybrid contribution 0.491 1.025 0.024 1.137 sum -2.214 -1.322 -1.240 2.861 Atomic orbital electron populations 1.23160 0.79539 1.04438 1.01557 1.88097 1.21085 1.21891 1.93827 1.24104 1.00127 0.86297 0.89859 1.21178 0.74268 0.78718 0.87580 1.93186 1.36980 1.89318 1.96836 1.93223 1.94948 1.70613 1.56707 1.93183 1.68814 1.57027 1.96571 1.23590 0.99568 1.01141 0.93674 1.22049 0.97477 0.96398 0.95633 0.87536 1.22839 0.84811 0.95652 0.96800 1.86115 1.33259 1.33889 1.69890 1.18564 1.06579 0.86189 0.89769 1.17777 1.00774 0.82551 0.89396 1.91565 1.91527 1.46134 1.80527 1.21053 1.02101 0.89548 1.01802 1.19995 0.97767 0.96102 0.92718 1.25074 0.94837 0.99676 0.98845 1.86641 1.17412 1.95120 1.33889 0.94900 0.88166 0.77036 0.81241 1.21087 1.04251 0.97371 0.94508 1.17598 1.00866 0.92611 0.78670 1.91585 1.90640 1.97148 1.30027 1.23309 0.90795 1.05864 0.94854 0.92723 0.87950 0.92659 0.86880 0.88742 0.92016 0.90114 0.82994 0.85445 0.77259 1.17522 1.18028 0.83119 0.88120 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 101.05 1.05 1.04 16 2 O -0.33 -0.08 8.34 -35.23 -0.29 -0.38 16 3 C 0.04 -0.01 0.85 -89.67 -0.08 -0.09 16 4 C 0.44 0.50 2.51 37.16 0.09 0.60 16 5 F -0.18 -0.24 15.24 2.25 0.03 -0.21 16 6 F -0.17 -0.50 17.09 2.25 0.04 -0.46 16 7 F -0.17 -0.23 15.82 2.25 0.04 -0.19 16 8 C -0.14 0.31 6.52 -25.92 -0.17 0.14 16 9 C -0.10 0.13 4.19 -89.81 -0.38 -0.25 16 10 H 0.11 -0.18 8.14 -51.93 -0.42 -0.60 16 11 C 0.07 -0.01 5.66 37.16 0.21 0.20 16 12 O -0.31 -0.65 9.79 -19.78 -0.19 -0.84 16 13 C 0.04 0.05 5.74 -39.14 -0.22 -0.18 16 14 C 0.12 0.10 7.31 -39.31 -0.29 -0.19 16 15 F -0.12 -0.25 17.11 2.25 0.04 -0.21 16 16 C -0.13 0.11 9.66 -39.53 -0.38 -0.28 16 17 C -0.07 0.11 5.35 -104.61 -0.56 -0.45 16 18 C -0.07 0.18 2.80 36.00 0.10 0.28 16 19 O -0.52 0.41 12.83 -35.23 -0.45 -0.04 16 20 Si 0.69 -1.83 29.87 -169.99 -5.08 -6.91 16 21 C -0.15 0.20 8.64 -39.53 -0.34 -0.14 16 22 C 0.12 0.08 7.31 -39.31 -0.29 -0.20 16 23 F -0.12 -0.23 17.11 2.25 0.04 -0.19 16 24 C -0.11 0.09 6.92 -25.78 -0.18 -0.09 16 25 H 0.05 -0.17 6.76 -51.93 -0.35 -0.52 16 26 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 27 H 0.05 -0.06 6.25 -51.93 -0.32 -0.38 16 28 H 0.11 -0.34 8.06 -51.93 -0.42 -0.76 16 29 H 0.09 -0.29 6.70 -51.93 -0.35 -0.63 16 30 H 0.06 -0.05 8.14 -51.92 -0.42 -0.48 16 31 H 0.08 0.02 6.09 -51.93 -0.32 -0.30 16 32 H 0.15 -0.27 8.06 -52.49 -0.42 -0.70 16 33 H 0.13 -0.45 7.96 -51.93 -0.41 -0.87 16 34 H 0.38 -1.34 8.70 45.56 0.40 -0.94 16 35 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 36 H -0.26 0.17 7.01 56.52 0.40 0.57 16 37 H 0.15 -0.44 4.83 -52.49 -0.25 -0.70 16 38 H 0.10 0.01 8.10 -51.93 -0.42 -0.41 16 39 H 0.12 -0.20 7.01 -51.93 -0.36 -0.57 16 LS Contribution 344.16 15.07 5.19 5.19 Total: 0.00 -5.85 344.16 -5.78 -11.63 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -3.71 Total: -7.78 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.42 Total: 0.39 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -0.94 Total: -1.26 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.19 Total: -1.25 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.08 Total: -6.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -5.85 -5.78 -11.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.739 kcal (2) G-P(sol) polarization free energy of solvation -5.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds