Wall clock time and date at job start Mon Mar 8 2021 08:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99887 * 2 1 4 4 C 1.52996 * 112.84755 * 65.99110 * 3 2 1 5 5 F 1.39904 * 109.47449 * 283.51953 * 4 3 2 6 6 F 1.39904 * 109.47248 * 43.52403 * 4 3 2 7 7 F 1.39909 * 109.47039 * 163.52279 * 4 3 2 8 8 C 1.53779 * 113.61586 * 294.79604 * 3 2 1 9 9 C 1.53782 * 87.07955 * 270.79955 * 8 3 2 10 10 H 1.09001 * 113.61497 * 219.93159 * 9 8 3 11 11 C 1.53005 * 113.61526 * 89.11831 * 9 8 3 12 12 O 1.42891 * 109.47193 * 176.52515 * 11 9 8 13 13 C 1.36014 * 117.00289 * 179.97438 * 12 11 9 14 14 C 1.38836 * 120.06366 * 90.00174 * 13 12 11 15 15 F 1.35097 * 120.03581 * 359.95703 * 14 13 12 16 16 C 1.38375 * 119.92589 * 179.97438 * 14 13 12 17 17 C 1.38249 * 120.07252 * 0.02562 * 16 14 13 18 18 C 1.50697 * 119.93310 * 179.97438 * 17 16 14 19 19 O 1.42893 * 109.47242 * 64.99804 * 18 17 16 20 20 Si 1.86293 * 109.47282 * 185.00126 * 18 17 16 21 21 C 1.38254 * 120.13776 * 0.25556 * 17 16 14 22 22 C 1.38371 * 120.06791 * 359.48800 * 21 17 16 23 23 F 1.35102 * 120.03758 * 180.25423 * 22 21 17 24 24 C 1.53776 * 87.17296 * 334.52443 * 9 8 3 25 25 H 1.09000 * 109.46990 * 62.52796 * 1 2 3 26 26 H 1.08998 * 109.46971 * 182.53064 * 1 2 3 27 27 H 1.09003 * 109.47022 * 302.52766 * 1 2 3 28 28 H 1.08998 * 113.61975 * 156.24992 * 8 3 2 29 29 H 1.09002 * 113.61295 * 25.34850 * 8 3 2 30 30 H 1.09007 * 109.46984 * 56.52459 * 11 9 8 31 31 H 1.09000 * 109.46417 * 296.53071 * 11 9 8 32 32 H 1.07998 * 119.96396 * 180.02562 * 16 14 13 33 33 H 1.09004 * 109.47059 * 304.99895 * 18 17 16 34 34 H 0.96699 * 114.00043 * 59.99804 * 19 18 17 35 35 H 1.48500 * 110.00200 * 179.97438 * 20 18 17 36 36 H 1.48503 * 110.00062 * 301.31768 * 20 18 17 37 37 H 1.08000 * 119.96459 * 179.74595 * 21 17 16 38 38 H 1.08998 * 113.60989 * 140.02305 * 24 9 8 39 39 H 1.09000 * 113.61624 * 270.92350 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7278 2.0815 1.2879 5 9 0.4114 2.5548 1.2681 6 9 1.9032 1.2369 2.3894 7 9 2.6106 3.1627 1.3841 8 6 1.7210 2.1086 -1.2791 9 6 2.9980 1.4842 -1.8658 10 1 3.5935 2.1810 -2.4557 11 6 2.7565 0.1543 -2.5827 12 8 3.9803 -0.3046 -3.1604 13 6 3.9394 -1.4828 -3.8386 14 6 3.6623 -1.4929 -5.1990 15 9 3.4319 -0.3323 -5.8509 16 6 3.6219 -2.6932 -5.8864 17 6 3.8567 -3.8814 -5.2199 18 6 3.8114 -5.1868 -5.9714 19 8 4.8680 -5.2198 -6.9329 20 14 4.0164 -6.5998 -4.7747 21 6 4.1272 -3.8751 -3.8641 22 6 4.1742 -2.6778 -3.1721 23 9 4.4437 -2.6719 -1.8482 24 6 3.4927 1.3230 -0.4187 25 1 -0.3633 0.4741 -0.9118 26 1 -0.3633 -1.0267 0.0454 27 1 -0.3633 0.5526 0.8665 28 1 1.7862 3.1879 -1.1412 29 1 0.8094 1.8007 -1.7912 30 1 2.0140 0.2947 -3.3684 31 1 2.3933 -0.5834 -1.8672 32 1 3.4068 -2.7018 -6.9447 33 1 2.8527 -5.2792 -6.4818 34 1 5.7520 -5.1423 -6.5487 35 1 3.9729 -7.8930 -5.5035 36 1 5.3055 -6.4682 -4.0494 37 1 4.3062 -4.8053 -3.3454 38 1 4.0104 0.3813 -0.2367 39 1 4.0415 2.1879 -0.0459 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_6672274_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:55:00 Heat of formation + Delta-G solvation = -278.517686 kcal Electronic energy + Delta-G solvation = -33048.981532 eV Core-core repulsion = 27567.949268 eV Total energy + Delta-G solvation = -5481.032263 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.093 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -51.26986 -50.17202 -50.13241 -48.80374 -48.73759 -41.60655 -40.79239 -39.25295 -37.48428 -36.96259 -32.26471 -31.64781 -30.41404 -28.21038 -27.55444 -26.80776 -26.32758 -24.38480 -23.43348 -22.92671 -20.69449 -19.93698 -19.58413 -19.51283 -19.24862 -19.02687 -18.76246 -17.77701 -17.48593 -17.23529 -16.92747 -16.52066 -16.49240 -16.47694 -16.19784 -16.06213 -15.80953 -15.76589 -15.66513 -15.64789 -15.52497 -15.17623 -14.93711 -14.90718 -14.51752 -14.39638 -14.19719 -14.06098 -13.73323 -13.45256 -13.23970 -13.06476 -12.87844 -12.65885 -12.42153 -12.21959 -11.97396 -11.90109 -11.65544 -11.25854 -10.75847 -10.73290 -10.02097 -9.94371 -4.92108 -0.48920 -0.28376 1.24013 1.51615 1.59850 1.80670 1.96629 2.07761 2.24598 2.53423 2.57996 2.62009 2.87879 3.14084 3.24788 3.29228 3.35636 3.47429 3.48713 3.58473 3.74986 3.86281 4.12683 4.23621 4.26288 4.30006 4.35560 4.41986 4.47856 4.49629 4.53044 4.55723 4.64164 4.68555 4.75660 4.79732 4.81865 4.95309 5.00407 5.33620 5.71035 6.13905 6.45161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.345 6.345 3 C 0.037 3.963 4 C 0.433 3.567 5 F -0.183 7.183 6 F -0.187 7.187 7 F -0.176 7.176 8 C -0.132 4.132 9 C -0.094 4.094 10 H 0.111 0.889 11 C 0.072 3.928 12 O -0.333 6.333 13 C 0.024 3.976 14 C 0.101 3.899 15 F -0.130 7.130 16 C -0.117 4.117 17 C -0.056 4.056 18 C -0.075 4.075 19 O -0.541 6.541 20 Si 0.760 3.240 21 C -0.142 4.142 22 C 0.107 3.893 23 F -0.127 7.127 24 C -0.113 4.113 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.046 0.954 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.390 0.610 35 H -0.297 1.297 36 H -0.280 1.280 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -1.753 -1.944 4.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.263 6.263 3 C -0.005 4.005 4 C 0.379 3.621 5 F -0.165 7.165 6 F -0.169 7.169 7 F -0.158 7.158 8 C -0.169 4.169 9 C -0.113 4.113 10 H 0.130 0.870 11 C -0.001 4.001 12 O -0.250 6.250 13 C -0.022 4.022 14 C 0.081 3.919 15 F -0.108 7.108 16 C -0.136 4.136 17 C -0.057 4.057 18 C -0.184 4.184 19 O -0.350 6.350 20 Si 0.665 3.335 21 C -0.161 4.161 22 C 0.087 3.913 23 F -0.106 7.106 24 C -0.150 4.150 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.065 0.935 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.239 0.761 35 H -0.225 1.225 36 H -0.207 1.207 37 H 0.184 0.816 38 H 0.106 0.894 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.277 -2.473 -2.014 4.572 hybrid contribution 0.689 1.004 0.255 1.244 sum -2.588 -1.469 -1.758 3.456 Atomic orbital electron populations 1.23308 0.78655 1.05301 1.01939 1.88085 1.22142 1.22279 1.93836 1.24204 1.00384 0.86340 0.89615 1.21491 0.74142 0.78681 0.87789 1.93178 1.37098 1.89347 1.96837 1.93190 1.95028 1.71062 1.57607 1.93174 1.68868 1.57140 1.96600 1.23616 0.99618 1.01499 0.92186 1.22024 0.98080 0.96032 0.95137 0.87033 1.22910 0.84379 0.95950 0.96859 1.86076 1.34425 1.34352 1.70153 1.18738 1.07055 0.86262 0.90123 1.17893 1.01896 0.82749 0.89314 1.91533 1.91795 1.46826 1.80663 1.21200 1.01047 0.89090 1.02289 1.20042 0.97059 0.96179 0.92439 1.25216 0.95365 0.99007 0.98862 1.86620 1.18401 1.95106 1.34849 0.94062 0.86250 0.73916 0.79311 1.21245 1.02923 0.97274 0.94636 1.17749 1.01983 0.93142 0.78381 1.91553 1.90929 1.97222 1.30857 1.23356 0.90713 1.05568 0.95410 0.91180 0.86839 0.93498 0.85727 0.87520 0.91306 0.90664 0.81834 0.83790 0.76058 1.22452 1.20696 0.81563 0.89399 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.35 8.34 -148.98 -1.24 -1.59 16 3 C 0.04 -0.01 0.85 -10.18 -0.01 -0.02 16 4 C 0.43 1.23 2.51 71.98 0.18 1.41 16 5 F -0.18 -0.53 15.24 44.97 0.69 0.16 16 6 F -0.19 -1.29 17.09 44.97 0.77 -0.52 16 7 F -0.18 -0.52 15.82 44.97 0.71 0.19 16 8 C -0.13 0.63 6.52 31.12 0.20 0.83 16 9 C -0.09 0.23 4.19 -10.27 -0.04 0.19 16 10 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 11 C 0.07 0.02 5.66 71.98 0.41 0.43 16 12 O -0.33 -1.69 9.79 -93.71 -0.92 -2.61 16 13 C 0.02 0.08 5.74 22.56 0.13 0.21 16 14 C 0.10 0.19 7.31 22.45 0.16 0.35 16 15 F -0.13 -0.59 17.11 44.97 0.77 0.18 16 16 C -0.12 0.28 9.66 22.31 0.22 0.50 16 17 C -0.06 0.25 5.35 -19.86 -0.11 0.14 16 18 C -0.08 0.46 2.80 71.23 0.20 0.66 16 19 O -0.54 1.41 12.83 -148.98 -1.91 -0.50 16 20 Si 0.76 -4.51 29.87 68.60 2.05 -2.46 16 21 C -0.14 0.46 8.64 22.31 0.19 0.65 16 22 C 0.11 0.19 7.31 22.44 0.16 0.36 16 23 F -0.13 -0.62 17.11 44.97 0.77 0.15 16 24 C -0.11 0.10 6.92 31.21 0.22 0.31 16 25 H 0.07 -0.47 6.76 -2.39 -0.02 -0.49 16 26 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.05 -0.08 6.25 -2.39 -0.01 -0.09 16 28 H 0.12 -0.86 8.06 -2.39 -0.02 -0.88 16 29 H 0.11 -0.76 6.70 -2.39 -0.02 -0.78 16 30 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.08 0.09 6.09 -2.39 -0.01 0.08 16 32 H 0.16 -0.79 8.06 -2.91 -0.02 -0.81 16 33 H 0.14 -1.32 7.96 -2.39 -0.02 -1.33 16 34 H 0.39 -3.06 8.70 -74.06 -0.64 -3.71 16 35 H -0.30 -0.60 7.11 99.48 0.71 0.11 16 36 H -0.28 0.49 7.01 99.48 0.70 1.19 16 37 H 0.17 -1.13 4.83 -2.91 -0.01 -1.15 16 38 H 0.09 0.15 8.10 -2.39 -0.02 0.13 16 39 H 0.12 -0.36 7.01 -2.39 -0.02 -0.38 16 Total: 0.00 -14.46 344.16 5.31 -9.15 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: 0.53 Total: -9.34 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 3.10 Total: 7.19 kcal Atomic # 8 Polarization: -0.63 SS G_CDS: -4.07 Total: -4.70 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 3.70 Total: 0.16 kcal Atomic # 14 Polarization: -4.51 SS G_CDS: 2.05 Total: -2.46 kcal Total: -14.46 5.31 -9.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -269.367 kcal (2) G-P(sol) polarization free energy of solvation -14.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -283.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds