Wall clock time and date at job start Mon Mar 8 2021 09:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.52995 * 109.47377 * 239.99626 * 2 1 3 5 5 Si 1.86296 * 109.47185 * 119.99617 * 2 1 3 6 6 C 1.86308 * 109.47204 * 300.00458 * 5 2 1 7 7 C 1.86294 * 109.47496 * 180.02562 * 5 2 1 8 8 O 1.63105 * 109.47132 * 60.00128 * 5 2 1 9 9 C 1.42898 * 114.00169 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47106 * 179.97438 * 9 8 5 11 11 C 1.53001 * 109.47132 * 179.97438 * 10 9 8 12 12 O 1.42901 * 109.46951 * 179.97438 * 11 10 9 13 13 C 1.36018 * 116.99722 * 180.02562 * 12 11 10 14 14 C 1.38830 * 120.06785 * 90.00720 * 13 12 11 15 15 F 1.35106 * 120.03316 * 359.97438 * 14 13 12 16 16 C 1.38368 * 119.92966 * 180.02562 * 14 13 12 17 17 C 1.38251 * 120.07124 * 0.02562 * 16 14 13 18 18 C 1.50699 * 119.93267 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.46964 * 299.99826 * 18 17 16 20 20 Si 1.86301 * 109.47146 * 179.97438 * 18 17 16 21 21 H 1.48506 * 109.47113 * 59.99890 * 20 18 17 22 22 H 1.48503 * 109.46998 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47376 * 300.00116 * 20 18 17 24 24 C 1.38259 * 120.13781 * 0.24618 * 17 16 14 25 25 C 1.38372 * 120.06767 * 359.45747 * 24 17 16 26 26 F 1.35096 * 120.03741 * 180.29217 * 25 24 17 27 27 H 1.08996 * 109.46839 * 300.00305 * 1 2 3 28 28 H 1.09001 * 109.46719 * 60.00053 * 1 2 3 29 29 H 1.08998 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47630 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47195 * 299.99655 * 3 2 1 32 32 H 1.09004 * 109.47657 * 59.99425 * 3 2 1 33 33 H 1.08998 * 109.47098 * 300.00171 * 4 2 1 34 34 H 1.09001 * 109.46934 * 60.00453 * 4 2 1 35 35 H 1.09001 * 109.47167 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47184 * 179.97438 * 6 5 2 37 37 H 1.09007 * 109.46641 * 299.99467 * 6 5 2 38 38 H 1.08994 * 109.47337 * 59.99618 * 6 5 2 39 39 H 1.09004 * 109.47347 * 299.99919 * 7 5 2 40 40 H 1.08998 * 109.47131 * 59.99970 * 7 5 2 41 41 H 1.08999 * 109.47470 * 180.02562 * 7 5 2 42 42 H 1.09001 * 109.46991 * 60.00178 * 9 8 5 43 43 H 1.08996 * 109.47090 * 299.99667 * 9 8 5 44 44 H 1.09004 * 109.46812 * 59.99760 * 10 9 8 45 45 H 1.09003 * 109.47338 * 299.99761 * 10 9 8 46 46 H 1.09001 * 109.46706 * 60.00461 * 11 10 9 47 47 H 1.08991 * 109.47467 * 300.00444 * 11 10 9 48 48 H 1.08003 * 119.96614 * 179.97438 * 16 14 13 49 49 H 1.09002 * 109.46959 * 59.99797 * 18 17 16 50 50 H 0.96698 * 113.99898 * 299.99550 * 19 18 17 51 51 H 1.07994 * 119.96406 * 179.70721 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 14 2.1510 -0.8781 1.5212 6 6 1.5299 0.0002 3.0423 7 6 4.0139 -0.8775 1.5216 8 8 1.6074 -2.4159 1.5212 9 6 2.0285 -3.1812 2.6521 10 6 1.4627 -4.5989 2.5478 11 6 1.9142 -5.4186 3.7583 12 8 1.3852 -6.7425 3.6612 13 6 1.6941 -7.6061 4.6656 14 6 0.8712 -7.7000 5.7798 15 9 -0.2376 -6.9331 5.8682 16 6 1.1885 -8.5791 6.8002 17 6 2.3238 -9.3630 6.7113 18 6 2.6666 -10.3189 7.8246 19 8 2.8439 -9.5898 9.0407 20 14 4.2418 -11.2212 7.4055 21 1 5.3444 -10.2405 7.2379 22 1 4.5800 -12.1627 8.5029 23 1 4.0570 -11.9789 6.1418 24 6 3.1483 -9.2677 5.6055 25 6 2.8332 -8.3950 4.5790 26 9 3.6362 -8.3067 3.4961 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9565 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7209 -1.2493 36 1 1.8929 -0.5139 3.9323 37 1 1.8933 1.0279 3.0423 38 1 0.4399 0.0002 3.0423 39 1 4.3777 -1.3911 0.6317 40 1 4.3769 0.1503 1.5218 41 1 4.3773 -1.3916 2.4114 42 1 1.6636 -2.7111 3.5653 43 1 3.1173 -3.2251 2.6760 44 1 1.8272 -5.0693 1.6345 45 1 0.3738 -4.5548 2.5242 46 1 1.5500 -4.9483 4.6717 47 1 3.0029 -5.4627 3.7816 48 1 0.5490 -8.6523 7.6675 49 1 1.8575 -11.0390 7.9473 50 1 3.5495 -8.9296 9.0042 51 1 4.0369 -9.8780 5.5411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_6672274_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:22 Heat of formation + Delta-G solvation = -240.852275 kcal Electronic energy + Delta-G solvation = -30564.574604 eV Core-core repulsion = 26030.481743 eV Total energy + Delta-G solvation = -4534.092861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.12806 -50.07823 -41.00335 -39.53924 -38.26768 -37.38155 -36.85803 -33.74107 -31.85342 -31.58989 -29.47466 -29.12376 -27.88929 -27.40860 -27.37894 -26.03888 -24.42832 -23.00959 -22.73744 -20.44985 -19.65726 -19.10486 -18.86545 -17.94302 -17.88593 -17.29136 -17.12627 -16.87497 -16.46115 -16.41128 -16.28558 -16.00868 -15.96311 -15.62313 -15.58174 -15.18852 -14.94895 -14.88996 -14.71583 -14.20039 -14.02933 -13.89857 -13.71587 -13.53879 -13.47138 -13.28910 -13.04750 -12.96868 -12.95527 -12.90581 -12.75798 -12.54794 -12.41556 -12.36326 -12.25994 -11.96807 -11.79008 -11.73181 -11.50488 -11.37679 -11.11355 -10.73353 -10.40389 -10.10226 -10.04380 -9.94979 -0.52940 -0.32627 0.92531 1.27895 1.32350 1.35840 1.70387 1.76107 1.82558 2.01327 2.23075 2.42178 2.64247 3.06832 3.13597 3.38282 3.48506 3.74865 3.81147 3.92103 3.97557 4.08186 4.09830 4.11002 4.19771 4.25669 4.28930 4.38824 4.43617 4.45160 4.51383 4.62838 4.66319 4.68613 4.68998 4.70170 4.79088 4.83846 4.86783 4.98020 4.98100 5.00257 5.08756 5.08875 5.17905 5.28967 5.31853 5.39558 5.40119 5.48752 5.51553 5.56393 6.14738 6.31484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.287 2.713 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.623 6.623 9 C 0.091 3.909 10 C -0.122 4.122 11 C 0.062 3.938 12 O -0.314 6.314 13 C 0.033 3.967 14 C 0.117 3.883 15 F -0.118 7.118 16 C -0.123 4.123 17 C -0.067 4.067 18 C -0.081 4.081 19 O -0.533 6.533 20 Si 0.945 3.055 21 H -0.247 1.247 22 H -0.247 1.247 23 H -0.246 1.246 24 C -0.161 4.161 25 C 0.122 3.878 26 F -0.118 7.118 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.156 0.844 49 H 0.129 0.871 50 H 0.379 0.621 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -0.008 2.588 3.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.015 3.985 10 C -0.159 4.159 11 C -0.013 4.013 12 O -0.231 6.231 13 C -0.013 4.013 14 C 0.097 3.903 15 F -0.096 7.096 16 C -0.142 4.142 17 C -0.068 4.068 18 C -0.191 4.191 19 O -0.338 6.338 20 Si 0.766 3.234 21 H -0.171 1.171 22 H -0.170 1.170 23 H -0.169 1.169 24 C -0.179 4.179 25 C 0.101 3.899 26 F -0.096 7.096 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.173 0.827 49 H 0.147 0.853 50 H 0.227 0.773 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.422 -1.002 2.225 3.439 hybrid contribution 0.263 1.329 -0.139 1.362 sum 2.685 0.327 2.087 3.416 Atomic orbital electron populations 1.21513 0.93772 1.02055 1.01805 1.25778 1.00729 1.02629 1.12694 1.21556 1.00762 0.94895 1.02165 1.21513 1.00594 1.00282 0.96756 0.76722 0.63033 0.53360 0.65056 1.27034 1.07076 1.09500 1.17694 1.27034 1.25040 1.04760 1.04472 1.85332 1.79338 1.46071 1.47465 1.21790 0.98082 0.91505 0.87149 1.21504 1.03431 0.93078 0.97925 1.22808 0.98237 0.80731 0.99478 1.86154 1.73532 1.21650 1.41737 1.18587 0.94909 0.97136 0.90671 1.17778 0.85322 0.93347 0.93892 1.91575 1.48990 1.73014 1.96049 1.21048 0.98416 0.95849 0.98891 1.20055 0.93810 0.97420 0.95491 1.25052 1.12291 0.97028 0.84754 1.86558 1.59652 1.55504 1.32080 0.85727 0.75921 0.80496 0.81230 1.17093 1.17027 1.16933 1.21077 1.02196 1.00832 0.93830 1.17585 0.88760 0.98267 0.85249 1.91571 1.71261 1.94981 1.51806 0.92700 0.92765 0.92124 0.92521 0.92476 0.92517 0.92123 0.92771 0.92706 0.91514 0.90671 0.90813 0.90822 0.90667 0.91518 0.92385 0.92397 0.89521 0.89497 0.92066 0.92090 0.82682 0.85329 0.77332 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 2 C -0.37 0.06 0.53 -90.62 -0.05 0.02 16 3 C -0.14 0.08 7.85 37.16 0.29 0.37 16 4 C -0.13 -0.03 7.85 37.15 0.29 0.26 16 5 Si 1.29 -1.29 8.45 -169.99 -1.44 -2.73 16 6 C -0.51 0.39 8.50 101.05 0.86 1.25 16 7 C -0.51 0.40 8.50 101.05 0.86 1.26 16 8 O -0.62 -0.26 8.56 -35.23 -0.30 -0.57 16 9 C 0.09 -0.08 5.12 37.16 0.19 0.11 16 10 C -0.12 0.00 5.95 -26.73 -0.16 -0.16 16 11 C 0.06 0.01 6.06 37.16 0.23 0.23 16 12 O -0.31 -0.85 9.79 -19.80 -0.19 -1.04 16 13 C 0.03 0.06 5.74 -39.14 -0.22 -0.16 16 14 C 0.12 0.12 7.31 -39.31 -0.29 -0.16 16 15 F -0.12 -0.27 17.11 2.25 0.04 -0.24 16 16 C -0.12 0.10 9.58 -39.53 -0.38 -0.28 16 17 C -0.07 0.10 5.39 -104.61 -0.56 -0.46 16 18 C -0.08 0.22 2.82 36.01 0.10 0.32 16 19 O -0.53 1.12 12.77 -35.23 -0.45 0.67 16 20 Si 0.94 -2.32 25.07 -169.99 -4.26 -6.58 16 21 H -0.25 0.57 7.11 56.52 0.40 0.97 16 22 H -0.25 0.22 7.11 56.52 0.40 0.62 16 23 H -0.25 0.42 7.11 56.52 0.40 0.83 16 24 C -0.16 0.13 8.64 -39.52 -0.34 -0.21 16 25 C 0.12 0.13 7.31 -39.31 -0.29 -0.15 16 26 F -0.12 -0.26 17.11 2.25 0.04 -0.23 16 27 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 28 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 30 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 31 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 33 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 34 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 35 H 0.05 -0.02 7.79 -51.93 -0.40 -0.43 16 36 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 37 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 38 H 0.07 -0.03 7.79 -51.93 -0.40 -0.44 16 39 H 0.07 -0.03 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.08 7.48 -51.93 -0.39 -0.47 16 42 H 0.06 -0.13 7.21 -51.93 -0.37 -0.51 16 43 H 0.06 -0.13 7.21 -51.93 -0.37 -0.51 16 44 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 45 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 46 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 47 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 48 H 0.16 -0.31 8.06 -52.48 -0.42 -0.73 16 49 H 0.13 -0.49 7.96 -51.93 -0.41 -0.90 16 50 H 0.38 -2.03 8.70 45.56 0.40 -1.63 16 51 H 0.15 -0.31 4.87 -52.49 -0.26 -0.57 16 LS Contribution 419.40 15.07 6.32 6.32 Total: 0.00 -5.12 419.40 -7.47 -12.59 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -8.04 Total: -10.68 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.82 Total: 2.49 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.95 Total: -0.94 kcal Atomic # 9 Polarization: -0.54 SS G_CDS: 0.08 Total: -0.46 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: -5.70 Total: -9.31 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -5.12 -7.47 -12.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.266 kcal (2) G-P(sol) polarization free energy of solvation -5.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds