Wall clock time and date at job start Mon Mar 8 2021 09:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.52995 * 109.47377 * 239.99626 * 2 1 3 5 5 Si 1.86296 * 109.47185 * 119.99617 * 2 1 3 6 6 C 1.86308 * 109.47204 * 300.00458 * 5 2 1 7 7 C 1.86294 * 109.47496 * 180.02562 * 5 2 1 8 8 O 1.63105 * 109.47132 * 60.00128 * 5 2 1 9 9 C 1.42898 * 114.00169 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47106 * 179.97438 * 9 8 5 11 11 C 1.53001 * 109.47132 * 179.97438 * 10 9 8 12 12 O 1.42901 * 109.46951 * 179.97438 * 11 10 9 13 13 C 1.36018 * 116.99722 * 180.02562 * 12 11 10 14 14 C 1.38830 * 120.06785 * 90.00720 * 13 12 11 15 15 F 1.35106 * 120.03316 * 359.97438 * 14 13 12 16 16 C 1.38368 * 119.92966 * 180.02562 * 14 13 12 17 17 C 1.38251 * 120.07124 * 0.02562 * 16 14 13 18 18 C 1.50699 * 119.93267 * 179.97438 * 17 16 14 19 19 O 1.42898 * 109.46964 * 299.99826 * 18 17 16 20 20 Si 1.86301 * 109.47146 * 179.97438 * 18 17 16 21 21 H 1.48506 * 109.47113 * 59.99890 * 20 18 17 22 22 H 1.48503 * 109.46998 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47376 * 300.00116 * 20 18 17 24 24 C 1.38259 * 120.13781 * 0.24618 * 17 16 14 25 25 C 1.38372 * 120.06767 * 359.45747 * 24 17 16 26 26 F 1.35096 * 120.03741 * 180.29217 * 25 24 17 27 27 H 1.08996 * 109.46839 * 300.00305 * 1 2 3 28 28 H 1.09001 * 109.46719 * 60.00053 * 1 2 3 29 29 H 1.08998 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47630 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47195 * 299.99655 * 3 2 1 32 32 H 1.09004 * 109.47657 * 59.99425 * 3 2 1 33 33 H 1.08998 * 109.47098 * 300.00171 * 4 2 1 34 34 H 1.09001 * 109.46934 * 60.00453 * 4 2 1 35 35 H 1.09001 * 109.47167 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47184 * 179.97438 * 6 5 2 37 37 H 1.09007 * 109.46641 * 299.99467 * 6 5 2 38 38 H 1.08994 * 109.47337 * 59.99618 * 6 5 2 39 39 H 1.09004 * 109.47347 * 299.99919 * 7 5 2 40 40 H 1.08998 * 109.47131 * 59.99970 * 7 5 2 41 41 H 1.08999 * 109.47470 * 180.02562 * 7 5 2 42 42 H 1.09001 * 109.46991 * 60.00178 * 9 8 5 43 43 H 1.08996 * 109.47090 * 299.99667 * 9 8 5 44 44 H 1.09004 * 109.46812 * 59.99760 * 10 9 8 45 45 H 1.09003 * 109.47338 * 299.99761 * 10 9 8 46 46 H 1.09001 * 109.46706 * 60.00461 * 11 10 9 47 47 H 1.08991 * 109.47467 * 300.00444 * 11 10 9 48 48 H 1.08003 * 119.96614 * 179.97438 * 16 14 13 49 49 H 1.09002 * 109.46959 * 59.99797 * 18 17 16 50 50 H 0.96698 * 113.99898 * 299.99550 * 19 18 17 51 51 H 1.07994 * 119.96406 * 179.70721 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 14 2.1510 -0.8781 1.5212 6 6 1.5299 0.0002 3.0423 7 6 4.0139 -0.8775 1.5216 8 8 1.6074 -2.4159 1.5212 9 6 2.0285 -3.1812 2.6521 10 6 1.4627 -4.5989 2.5478 11 6 1.9142 -5.4186 3.7583 12 8 1.3852 -6.7425 3.6612 13 6 1.6941 -7.6061 4.6656 14 6 0.8712 -7.7000 5.7798 15 9 -0.2376 -6.9331 5.8682 16 6 1.1885 -8.5791 6.8002 17 6 2.3238 -9.3630 6.7113 18 6 2.6666 -10.3189 7.8246 19 8 2.8439 -9.5898 9.0407 20 14 4.2418 -11.2212 7.4055 21 1 5.3444 -10.2405 7.2379 22 1 4.5800 -12.1627 8.5029 23 1 4.0570 -11.9789 6.1418 24 6 3.1483 -9.2677 5.6055 25 6 2.8332 -8.3950 4.5790 26 9 3.6362 -8.3067 3.4961 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9565 0.8899 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7209 -1.2493 36 1 1.8929 -0.5139 3.9323 37 1 1.8933 1.0279 3.0423 38 1 0.4399 0.0002 3.0423 39 1 4.3777 -1.3911 0.6317 40 1 4.3769 0.1503 1.5218 41 1 4.3773 -1.3916 2.4114 42 1 1.6636 -2.7111 3.5653 43 1 3.1173 -3.2251 2.6760 44 1 1.8272 -5.0693 1.6345 45 1 0.3738 -4.5548 2.5242 46 1 1.5500 -4.9483 4.6717 47 1 3.0029 -5.4627 3.7816 48 1 0.5490 -8.6523 7.6675 49 1 1.8575 -11.0390 7.9473 50 1 3.5495 -8.9296 9.0042 51 1 4.0369 -9.8780 5.5411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_6672274_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:21:21 Heat of formation + Delta-G solvation = -232.285123 kcal Electronic energy + Delta-G solvation = -30564.203105 eV Core-core repulsion = 26030.481743 eV Total energy + Delta-G solvation = -4533.721362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.21569 -50.16523 -41.00435 -39.51965 -38.21670 -37.24639 -36.83996 -33.72609 -31.82698 -31.56241 -29.39527 -29.07421 -27.85025 -27.39191 -27.29794 -25.97283 -24.42774 -22.96364 -22.71496 -20.43434 -19.66670 -19.09794 -18.86927 -17.92313 -17.80639 -17.31349 -17.09044 -16.87670 -16.50895 -16.41347 -16.10096 -15.98674 -15.88877 -15.62482 -15.60727 -15.17443 -14.86991 -14.85449 -14.71831 -14.21173 -13.96871 -13.86501 -13.64532 -13.47554 -13.39112 -13.19705 -13.01221 -12.96814 -12.94167 -12.85444 -12.75859 -12.45256 -12.39746 -12.27721 -12.11363 -11.83544 -11.75211 -11.71580 -11.44858 -11.33126 -11.13931 -10.55223 -10.33066 -10.06971 -10.04568 -9.93787 -0.51444 -0.31755 1.12852 1.41263 1.47470 1.53312 1.76931 1.86471 1.94224 2.11342 2.23946 2.46466 2.62941 3.11485 3.25393 3.50220 3.62426 3.81664 3.85823 3.93613 4.02006 4.10998 4.11589 4.14071 4.29557 4.33859 4.38995 4.45806 4.46071 4.52438 4.60123 4.72957 4.73286 4.73920 4.77013 4.78208 4.81653 4.81967 4.92931 4.99088 5.00395 5.01381 5.08282 5.08579 5.20266 5.32825 5.33718 5.39795 5.43499 5.51889 5.59067 5.63324 6.11343 6.69308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.313 2.687 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.641 6.641 9 C 0.082 3.918 10 C -0.119 4.119 11 C 0.059 3.941 12 O -0.337 6.337 13 C 0.021 3.979 14 C 0.103 3.897 15 F -0.129 7.129 16 C -0.112 4.112 17 C -0.058 4.058 18 C -0.073 4.073 19 O -0.545 6.545 20 Si 0.970 3.030 21 H -0.247 1.247 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.153 4.153 25 C 0.106 3.894 26 F -0.129 7.129 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.170 0.830 49 H 0.143 0.857 50 H 0.393 0.607 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -0.067 3.910 4.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.444 2.556 6 C -0.619 4.619 7 C -0.619 4.619 8 O -0.600 6.600 9 C 0.007 3.993 10 C -0.157 4.157 11 C -0.015 4.015 12 O -0.254 6.254 13 C -0.025 4.025 14 C 0.083 3.917 15 F -0.108 7.108 16 C -0.131 4.131 17 C -0.059 4.059 18 C -0.183 4.183 19 O -0.352 6.352 20 Si 0.794 3.206 21 H -0.171 1.171 22 H -0.194 1.194 23 H -0.179 1.179 24 C -0.172 4.172 25 C 0.086 3.914 26 F -0.107 7.107 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.187 0.813 49 H 0.160 0.840 50 H 0.243 0.757 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.063 -1.043 3.535 4.792 hybrid contribution 0.076 1.313 -0.536 1.420 sum 3.139 0.270 2.999 4.350 Atomic orbital electron populations 1.21542 0.94338 1.01678 1.01878 1.25929 1.00357 1.03143 1.13180 1.21599 1.01318 0.94568 1.02245 1.21541 1.01052 0.99938 0.96902 0.76246 0.62671 0.52553 0.64169 1.27080 1.06851 1.09912 1.18021 1.27077 1.25058 1.05112 1.04610 1.85319 1.79781 1.46813 1.48117 1.21966 0.99101 0.90805 0.87425 1.21471 1.02780 0.93845 0.97560 1.22921 0.98822 0.79913 0.99809 1.86106 1.74109 1.22668 1.42523 1.18761 0.95482 0.97423 0.90858 1.17924 0.85222 0.94134 0.94455 1.91542 1.49591 1.73491 1.96146 1.21207 0.98505 0.94833 0.98558 1.20190 0.93156 0.97103 0.95454 1.25036 1.12504 0.96657 0.84133 1.86537 1.60484 1.56032 1.32138 0.85372 0.75936 0.79621 0.79697 1.17082 1.19383 1.17943 1.21248 1.02535 1.00081 0.93311 1.17729 0.88871 0.99144 0.85608 1.91537 1.71540 1.95163 1.52475 0.92026 0.93317 0.92721 0.91729 0.93153 0.91733 0.92718 0.93324 0.92023 0.90880 0.90240 0.91226 0.91222 0.90235 0.90875 0.90817 0.90800 0.90543 0.90541 0.91123 0.91102 0.81264 0.83960 0.75746 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.18 7.85 71.98 0.56 0.38 16 2 C -0.38 -0.04 0.53 -10.80 -0.01 -0.05 16 3 C -0.14 0.15 7.85 71.98 0.56 0.72 16 4 C -0.14 -0.18 7.85 71.98 0.56 0.38 16 5 Si 1.31 -2.78 8.45 68.60 0.58 -2.21 16 6 C -0.52 1.09 8.50 113.37 0.96 2.06 16 7 C -0.52 1.12 8.50 113.37 0.96 2.08 16 8 O -0.64 -0.78 8.56 -148.98 -1.28 -2.06 16 9 C 0.08 -0.14 5.12 71.98 0.37 0.23 16 10 C -0.12 -0.13 5.95 30.59 0.18 0.05 16 11 C 0.06 0.06 6.06 71.98 0.44 0.50 16 12 O -0.34 -2.27 9.79 -93.75 -0.92 -3.19 16 13 C 0.02 0.09 5.74 22.56 0.13 0.22 16 14 C 0.10 0.25 7.31 22.44 0.16 0.42 16 15 F -0.13 -0.69 17.11 44.97 0.77 0.08 16 16 C -0.11 0.27 9.58 22.30 0.21 0.48 16 17 C -0.06 0.24 5.39 -19.86 -0.11 0.14 16 18 C -0.07 0.50 2.82 71.24 0.20 0.70 16 19 O -0.54 3.14 12.77 -148.98 -1.90 1.24 16 20 Si 0.97 -5.52 25.07 68.60 1.72 -3.80 16 21 H -0.25 1.41 7.11 99.48 0.71 2.12 16 22 H -0.27 0.49 7.11 99.48 0.71 1.20 16 23 H -0.26 1.03 7.11 99.48 0.71 1.74 16 24 C -0.15 0.32 8.64 22.31 0.19 0.52 16 25 C 0.11 0.28 7.31 22.45 0.16 0.45 16 26 F -0.13 -0.69 17.11 44.97 0.77 0.08 16 27 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 28 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.05 0.13 7.96 -2.39 -0.02 0.11 16 30 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 31 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 -0.18 7.79 -2.39 -0.02 -0.19 16 33 H 0.05 0.13 7.96 -2.39 -0.02 0.11 16 34 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 36 H 0.07 -0.24 7.48 -2.39 -0.02 -0.26 16 37 H 0.08 -0.23 7.79 -2.38 -0.02 -0.25 16 38 H 0.07 -0.08 7.79 -2.39 -0.02 -0.09 16 39 H 0.07 -0.08 7.79 -2.38 -0.02 -0.10 16 40 H 0.08 -0.23 7.79 -2.39 -0.02 -0.25 16 41 H 0.07 -0.25 7.48 -2.39 -0.02 -0.26 16 42 H 0.07 -0.37 7.21 -2.39 -0.02 -0.39 16 43 H 0.07 -0.38 7.21 -2.39 -0.02 -0.39 16 44 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 48 H 0.17 -0.91 8.06 -2.91 -0.02 -0.93 16 49 H 0.14 -1.34 7.96 -2.39 -0.02 -1.36 16 50 H 0.39 -4.80 8.70 -74.06 -0.64 -5.45 16 51 H 0.16 -0.81 4.87 -2.91 -0.01 -0.82 16 Total: 0.00 -12.35 419.40 6.33 -6.02 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: 1.03 Total: -5.44 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.56 Total: 9.28 kcal Atomic # 8 Polarization: 0.09 SS G_CDS: -4.09 Total: -4.01 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 1.54 Total: 0.16 kcal Atomic # 14 Polarization: -8.30 SS G_CDS: 2.30 Total: -6.00 kcal Total: -12.35 6.33 -6.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_6672274_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.269 kcal (2) G-P(sol) polarization free energy of solvation -12.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds