Wall clock time and date at job start Mon Mar 8 2021 10:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47470 * 2 1 4 4 C 1.53005 * 109.46747 * 240.00410 * 2 1 3 5 5 Si 1.86293 * 109.47348 * 120.00447 * 2 1 3 6 6 C 1.86297 * 109.47303 * 299.99546 * 5 2 1 7 7 C 1.86307 * 109.47253 * 179.97438 * 5 2 1 8 8 O 1.63103 * 109.47460 * 59.99797 * 5 2 1 9 9 C 1.42898 * 114.00375 * 180.02562 * 8 5 2 10 10 C 1.52997 * 109.47174 * 180.02562 * 9 8 5 11 11 O 1.42898 * 109.47484 * 64.99272 * 10 9 8 12 12 C 1.42900 * 114.00224 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47220 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46811 * 65.00972 * 13 12 11 15 15 C 1.35914 * 116.99774 * 180.02562 * 14 13 12 16 16 C 1.38701 * 120.04775 * 359.97438 * 15 14 13 17 17 C 1.38163 * 119.95489 * 180.02562 * 16 15 14 18 18 C 1.38317 * 120.04591 * 359.97438 * 17 16 15 19 19 Br 1.89106 * 119.95575 * 179.97438 * 18 17 16 20 20 C 1.38365 * 120.09272 * 0.02562 * 18 17 16 21 21 C 1.50700 * 119.97932 * 179.97438 * 20 18 17 22 22 O 1.42896 * 109.47204 * 75.58827 * 21 20 18 23 23 Si 1.86301 * 109.47183 * 195.59537 * 21 20 18 24 24 H 1.48493 * 109.47070 * 54.27699 * 23 21 20 25 25 H 1.48503 * 109.46894 * 294.27882 * 23 21 20 26 26 H 1.48497 * 109.47079 * 174.27992 * 23 21 20 27 27 C 1.38115 * 120.04310 * 0.23161 * 20 18 17 28 28 H 1.09006 * 109.46537 * 299.99656 * 1 2 3 29 29 H 1.08994 * 109.47277 * 59.99316 * 1 2 3 30 30 H 1.09003 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47208 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47227 * 300.00421 * 3 2 1 33 33 H 1.08998 * 109.46544 * 60.00092 * 3 2 1 34 34 H 1.09003 * 109.46895 * 299.99781 * 4 2 1 35 35 H 1.08994 * 109.47008 * 60.00109 * 4 2 1 36 36 H 1.09000 * 109.47054 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47384 * 179.97438 * 6 5 2 38 38 H 1.08993 * 109.47121 * 300.00404 * 6 5 2 39 39 H 1.09000 * 109.46854 * 59.99831 * 6 5 2 40 40 H 1.08992 * 109.46941 * 300.00100 * 7 5 2 41 41 H 1.09003 * 109.47029 * 60.00331 * 7 5 2 42 42 H 1.09003 * 109.47145 * 179.97438 * 7 5 2 43 43 H 1.08997 * 109.47212 * 59.99288 * 9 8 5 44 44 H 1.09003 * 109.46547 * 299.99447 * 9 8 5 45 45 H 1.09000 * 109.46726 * 304.99522 * 10 9 8 46 46 H 1.08997 * 109.47532 * 184.99924 * 10 9 8 47 47 H 1.09005 * 109.47049 * 60.00032 * 12 11 10 48 48 H 1.09000 * 109.47519 * 300.00733 * 12 11 10 49 49 H 1.08995 * 109.47475 * 304.99950 * 13 12 11 50 50 H 1.09005 * 109.46635 * 184.99930 * 13 12 11 51 51 H 1.07998 * 120.02228 * 0.02562 * 16 15 14 52 52 H 1.08004 * 119.97655 * 179.97438 * 17 16 15 53 53 H 1.09009 * 109.46824 * 315.59002 * 21 20 18 54 54 H 0.96699 * 114.00141 * 60.00665 * 22 21 20 55 55 H 1.08009 * 120.02502 * 179.72905 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1510 -0.8783 1.5210 6 6 1.5302 -0.0002 3.0422 7 6 4.0141 -0.8790 1.5206 8 8 1.6074 -2.4161 1.5210 9 6 2.0286 -3.1815 2.6518 10 6 1.4638 -4.5995 2.5467 11 8 2.0329 -5.2562 1.4123 12 6 1.5699 -6.5947 1.2226 13 6 2.2411 -7.1962 -0.0137 14 8 3.6468 -7.3117 0.2163 15 6 4.3962 -7.8314 -0.7914 16 6 3.7909 -8.2225 -1.9765 17 6 4.5545 -8.7511 -2.9995 18 6 5.9217 -8.8899 -2.8426 19 35 6.9643 -9.6144 -4.2441 20 6 6.5275 -8.5004 -1.6612 21 6 8.0173 -8.6533 -1.4927 22 8 8.6878 -7.6325 -2.2345 23 14 8.4572 -8.5009 0.3112 24 1 7.6558 -9.4709 1.0998 25 1 8.1638 -7.1218 0.7774 26 1 9.9025 -8.7884 0.4942 27 6 5.7671 -7.9765 -0.6341 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6765 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7216 -1.2492 37 1 1.8932 -0.5143 3.9322 38 1 1.8935 1.0274 3.0422 39 1 0.4402 -0.0001 3.0423 40 1 4.3770 -1.3929 0.6306 41 1 4.3778 0.1486 1.5205 42 1 4.3774 -1.3925 2.4108 43 1 1.6639 -2.7114 3.5650 44 1 3.1175 -3.2254 2.6755 45 1 0.3808 -4.5517 2.4333 46 1 1.7102 -5.1567 3.4506 47 1 0.4889 -6.5888 1.0820 48 1 1.8188 -7.1930 2.0991 49 1 2.0654 -6.5497 -0.8734 50 1 1.8228 -8.1835 -0.2100 51 1 2.7235 -8.1140 -2.0996 52 1 4.0835 -9.0562 -3.9223 53 1 8.3259 -9.6319 -1.8605 54 1 8.4605 -6.7334 -1.9604 55 1 6.2397 -7.6765 0.2896 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7425986_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:54:46 Heat of formation + Delta-G solvation = -180.123765 kcal Electronic energy + Delta-G solvation = -32302.108100 eV Core-core repulsion = 27895.518762 eV Total energy + Delta-G solvation = -4406.589338 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.45717 -39.60056 -38.90051 -37.51072 -37.18030 -36.82304 -33.14017 -32.82684 -31.82706 -30.05605 -29.39046 -29.07264 -29.03901 -27.83761 -27.38084 -26.97532 -24.22273 -23.73462 -23.44631 -21.98565 -20.41299 -19.50325 -18.19952 -17.99248 -17.89150 -17.25258 -17.05879 -16.64128 -16.48871 -16.24804 -16.06036 -15.98205 -15.58767 -15.39147 -14.94362 -14.85960 -14.84794 -14.74058 -14.52179 -14.06252 -13.97309 -13.89726 -13.53337 -13.37770 -13.24706 -13.18330 -12.97105 -12.95591 -12.92634 -12.79979 -12.63584 -12.43986 -12.40252 -12.28108 -12.15714 -12.06629 -11.81581 -11.74756 -11.68181 -11.49049 -11.30980 -11.17460 -11.04209 -10.55324 -10.45510 -10.29587 -10.18580 -10.04652 -9.23128 -0.03468 0.07117 0.69472 1.08638 1.41320 1.49785 1.55092 1.80578 1.86548 2.04278 2.14142 2.39329 2.49864 2.69536 3.40038 3.55751 3.65645 3.88794 3.98966 4.06053 4.12172 4.12758 4.13351 4.16851 4.22931 4.24277 4.33823 4.43625 4.45062 4.48925 4.51111 4.60144 4.65740 4.68749 4.72250 4.74770 4.78836 4.79554 4.81753 4.83422 4.84263 4.88176 4.99807 5.08561 5.09012 5.09499 5.10196 5.20473 5.33969 5.39013 5.40819 5.44172 5.53414 5.59419 5.64174 6.21605 6.31344 6.66131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.382 4.382 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.313 2.687 6 C -0.514 4.514 7 C -0.520 4.520 8 O -0.635 6.635 9 C 0.074 3.926 10 C 0.054 3.946 11 O -0.400 6.400 12 C 0.057 3.943 13 C 0.052 3.948 14 O -0.318 6.318 15 C 0.147 3.853 16 C -0.197 4.197 17 C -0.050 4.050 18 C -0.121 4.121 19 Br -0.046 7.046 20 C -0.056 4.056 21 C -0.087 4.087 22 O -0.537 6.537 23 Si 0.979 3.021 24 H -0.257 1.257 25 H -0.247 1.247 26 H -0.266 1.266 27 C -0.167 4.167 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.105 0.895 51 H 0.162 0.838 52 H 0.153 0.847 53 H 0.122 0.878 54 H 0.388 0.612 55 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 0.300 4.103 6.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.424 4.424 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.443 2.557 6 C -0.616 4.616 7 C -0.621 4.621 8 O -0.594 6.594 9 C -0.001 4.001 10 C -0.022 4.022 11 O -0.320 6.320 12 C -0.019 4.019 13 C -0.022 4.022 14 O -0.232 6.232 15 C 0.100 3.900 16 C -0.216 4.216 17 C -0.070 4.070 18 C -0.201 4.201 19 Br 0.039 6.961 20 C -0.059 4.059 21 C -0.197 4.197 22 O -0.343 6.343 23 Si 0.802 3.198 24 H -0.180 1.180 25 H -0.171 1.171 26 H -0.190 1.190 27 C -0.186 4.186 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.123 0.877 51 H 0.180 0.820 52 H 0.171 0.829 53 H 0.139 0.861 54 H 0.236 0.764 55 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.871 -0.436 4.066 5.631 hybrid contribution -0.628 0.867 -0.021 1.070 sum -4.499 0.430 4.045 6.065 Atomic orbital electron populations 1.21524 0.94053 1.01740 1.01903 1.25905 1.00552 1.02948 1.13038 1.21602 1.01150 0.94718 1.02296 1.21515 1.00751 0.99927 0.97035 0.76247 0.62097 0.52998 0.64356 1.27046 1.07004 1.09761 1.17832 1.27151 1.26064 1.04678 1.04161 1.85385 1.79243 1.46473 1.48330 1.22309 0.99336 0.90773 0.87689 1.22822 0.98412 0.92058 0.88934 1.87985 1.68544 1.26763 1.48688 1.22703 0.98561 0.83380 0.97256 1.23218 0.77547 1.02121 0.99363 1.86146 1.21377 1.77335 1.38302 1.19094 0.91044 0.92060 0.87788 1.21543 1.02122 1.04954 0.93026 1.21204 0.91190 0.94991 0.99583 1.21706 0.95003 1.08715 0.94699 1.96732 1.70806 1.83379 1.45148 1.20069 0.96938 0.96738 0.92116 1.25148 0.87977 0.96263 1.10305 1.86556 1.67347 1.18040 1.62380 0.85265 0.79802 0.81590 0.73113 1.18050 1.17056 1.19045 1.20386 0.91791 1.06044 1.00373 0.91887 0.93363 0.92577 0.92070 0.93114 0.91605 0.92797 0.93277 0.92566 0.90805 0.90409 0.90850 0.91840 0.90484 0.91265 0.88916 0.91936 0.91558 0.90302 0.88798 0.91529 0.90517 0.87701 0.82042 0.82916 0.86064 0.76352 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 2 C -0.38 -0.11 0.53 -10.79 -0.01 -0.11 16 3 C -0.14 0.10 7.85 71.98 0.56 0.66 16 4 C -0.14 -0.29 7.85 71.98 0.56 0.27 16 5 Si 1.31 -2.15 8.45 68.60 0.58 -1.57 16 6 C -0.51 1.39 8.50 113.37 0.96 2.35 16 7 C -0.52 -0.05 8.50 113.37 0.96 0.91 16 8 O -0.63 -0.85 8.52 -144.34 -1.23 -2.08 16 9 C 0.07 -0.14 5.51 71.98 0.40 0.25 16 10 C 0.05 -0.12 6.32 71.98 0.45 0.33 16 11 O -0.40 -1.01 10.27 -135.05 -1.39 -2.40 16 12 C 0.06 -0.19 6.32 71.98 0.45 0.26 16 13 C 0.05 -0.16 5.12 71.98 0.37 0.21 16 14 O -0.32 -1.00 10.10 -87.95 -0.89 -1.89 16 15 C 0.15 0.43 6.69 22.50 0.15 0.58 16 16 C -0.20 0.05 9.04 22.36 0.20 0.25 16 17 C -0.05 -0.05 9.78 22.27 0.22 0.17 16 18 C -0.12 -0.47 6.22 22.32 0.14 -0.34 16 19 Br -0.05 -0.23 31.99 -20.37 -0.65 -0.88 16 20 C -0.06 -0.19 5.26 -19.86 -0.10 -0.29 16 21 C -0.09 -0.17 2.02 71.24 0.14 -0.02 16 22 O -0.54 -1.33 12.73 -148.98 -1.90 -3.23 16 23 Si 0.98 0.76 25.31 68.60 1.74 2.50 16 24 H -0.26 -0.53 7.11 99.48 0.71 0.17 16 25 H -0.25 -0.10 6.97 99.48 0.69 0.60 16 26 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 27 C -0.17 -0.57 8.60 22.36 0.19 -0.37 16 28 H 0.06 -0.09 7.79 -2.38 -0.02 -0.11 16 29 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 31 H 0.06 -0.11 7.79 -2.39 -0.02 -0.12 16 32 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.06 -0.18 7.79 -2.39 -0.02 -0.19 16 34 H 0.05 0.18 7.97 -2.39 -0.02 0.16 16 35 H 0.05 0.12 8.14 -2.39 -0.02 0.11 16 36 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 37 H 0.07 -0.30 7.48 -2.39 -0.02 -0.31 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 40 H 0.06 0.14 7.79 -2.39 -0.02 0.12 16 41 H 0.08 -0.07 7.79 -2.39 -0.02 -0.09 16 42 H 0.07 -0.04 7.48 -2.39 -0.02 -0.06 16 43 H 0.09 -0.66 7.21 -2.39 -0.02 -0.68 16 44 H 0.06 -0.13 7.21 -2.39 -0.02 -0.15 16 45 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 48 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.08 -0.25 7.66 -2.39 -0.02 -0.27 16 50 H 0.11 -0.87 7.66 -2.38 -0.02 -0.89 16 51 H 0.16 -0.91 6.30 -2.91 -0.02 -0.93 16 52 H 0.15 -0.39 8.06 -2.91 -0.02 -0.41 16 53 H 0.12 0.24 7.19 -2.38 -0.02 0.22 16 54 H 0.39 -1.48 8.70 -74.06 -0.64 -2.12 16 55 H 0.14 0.28 5.04 -2.91 -0.01 0.26 16 Total: 0.00 -14.41 455.74 3.45 -10.96 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: 0.96 Total: -7.02 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.23 Total: 5.61 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -5.40 Total: -9.59 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: 2.32 Total: 0.93 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.65 Total: -0.88 kcal Total: -14.41 3.45 -10.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7425986_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.164 kcal (2) G-P(sol) polarization free energy of solvation -14.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds