Wall clock time and date at job start Mon Mar 8 2021 08:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47404 * 2 1 4 4 C 1.50705 * 109.46988 * 119.99725 * 2 1 3 5 5 C 1.38350 * 119.94653 * 75.00236 * 4 2 1 6 6 Cl 1.73605 * 119.97315 * 359.97438 * 5 4 2 7 7 C 1.38304 * 120.05174 * 180.02562 * 5 4 2 8 8 C 1.38646 * 119.94257 * 359.97133 * 7 5 4 9 9 O 1.35921 * 120.05019 * 180.02562 * 8 7 5 10 10 C 1.42899 * 117.00418 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47262 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47067 * 55.00089 * 11 10 9 13 13 C 1.53005 * 109.46982 * 174.99741 * 11 10 9 14 14 C 1.52999 * 109.47159 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47317 * 300.00546 * 14 13 11 16 16 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 17 17 O 1.42896 * 109.46906 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.47060 * 59.99960 * 15 14 13 19 19 C 1.52997 * 109.47143 * 295.00072 * 11 10 9 20 20 C 1.38865 * 119.89582 * 0.28357 * 8 7 5 21 21 Cl 1.73600 * 120.02375 * 179.69984 * 20 8 7 22 22 C 1.38210 * 119.94569 * 359.46407 * 20 8 7 23 23 H 0.96691 * 113.99709 * 300.00057 * 1 2 3 24 24 H 1.09000 * 109.47533 * 240.00053 * 2 1 3 25 25 H 1.48506 * 109.99984 * 300.00110 * 3 2 1 26 26 H 1.48503 * 109.99952 * 61.31567 * 3 2 1 27 27 H 1.07999 * 120.02919 * 179.97438 * 7 5 4 28 28 H 1.08997 * 109.47154 * 59.99828 * 10 9 8 29 29 H 1.08999 * 109.46794 * 299.99985 * 10 9 8 30 30 H 1.09002 * 109.46935 * 60.00267 * 13 11 10 31 31 H 1.09000 * 109.47360 * 300.00293 * 13 11 10 32 32 H 1.08996 * 109.46929 * 179.97438 * 14 13 11 33 33 H 1.09002 * 109.46716 * 60.00455 * 14 13 11 34 34 H 0.96703 * 114.00193 * 180.02562 * 17 15 14 35 35 H 1.08992 * 109.47399 * 59.99823 * 18 15 14 36 36 H 1.09004 * 109.46724 * 180.02562 * 18 15 14 37 37 H 1.09002 * 109.46695 * 299.99691 * 19 11 10 38 38 H 1.08993 * 109.47194 * 59.99677 * 19 11 10 39 39 H 1.07998 * 119.97207 * 180.25689 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8690 -2.0905 1.3051 6 17 1.2119 -3.0018 -0.0184 7 6 2.3289 -2.7446 2.4336 8 6 2.8532 -2.0161 3.4903 9 8 3.3062 -2.6567 4.6002 10 6 3.2123 -4.0826 4.6101 11 6 3.7674 -4.6212 5.9302 12 1 3.2493 -4.1457 6.7631 13 6 3.5533 -6.1348 5.9938 14 6 4.1089 -6.6735 7.3136 15 6 5.6051 -6.3658 7.4007 16 1 6.1229 -6.8412 6.5676 17 8 6.1238 -6.8684 8.6337 18 6 5.8190 -4.8522 7.3372 19 6 5.2635 -4.3134 6.0178 20 6 2.9097 -0.6306 3.4153 21 17 3.5583 0.2853 4.7397 22 6 2.4537 0.0182 2.2833 23 1 -0.3932 0.4417 0.7650 24 1 1.7924 -0.5138 -0.8900 25 1 1.5616 2.4679 -1.2085 26 1 1.5879 2.4585 1.2242 27 1 2.2797 -3.8219 2.4915 28 1 3.7896 -4.4905 3.7803 29 1 2.1684 -4.3787 4.5066 30 1 4.0715 -6.6103 5.1609 31 1 2.4874 -6.3541 5.9313 32 1 3.9560 -7.7517 7.3591 33 1 3.5912 -6.1981 8.1467 34 1 7.0694 -6.7081 8.7571 35 1 5.3013 -4.3768 8.1702 36 1 6.8850 -4.6330 7.3987 37 1 5.7815 -4.7890 5.1850 38 1 5.4159 -3.2352 5.9725 39 1 2.5013 1.0954 2.2228 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7874536_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:18:12 Heat of formation + Delta-G solvation = -114.107574 kcal Electronic energy + Delta-G solvation = -24148.584014 eV Core-core repulsion = 20302.351401 eV Total energy + Delta-G solvation = -3846.232613 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.062 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.67108 -40.26820 -39.29367 -37.86819 -37.66535 -37.10612 -36.60944 -32.54359 -32.11362 -31.80812 -31.22196 -27.26617 -26.15232 -24.27274 -23.78216 -22.82650 -22.07336 -20.88264 -19.65024 -18.52810 -18.20715 -17.83992 -17.23334 -16.88799 -16.43757 -16.39493 -15.96428 -15.62619 -15.51312 -15.45906 -14.93735 -14.59285 -14.49223 -14.30292 -13.84721 -13.62788 -13.46635 -13.38501 -13.19962 -12.83346 -12.72780 -12.63700 -12.21187 -12.09210 -12.04858 -11.93708 -11.76664 -11.74666 -11.61438 -11.55655 -11.09246 -10.71251 -10.66784 -10.08803 -9.37486 -4.94927 -0.30529 -0.11530 0.85854 1.06857 1.23303 1.54684 1.89197 1.92577 2.13402 3.22230 3.32989 3.38737 3.56795 3.64080 3.65851 3.72356 3.79147 4.01388 4.05663 4.15536 4.20394 4.30472 4.33268 4.35344 4.37491 4.48883 4.50530 4.56471 4.59218 4.66378 4.82369 4.91641 4.98242 5.06529 5.09416 5.13821 5.16504 5.19119 5.33744 5.43899 6.06194 6.47526 6.85604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.077 4.077 3 Si 0.761 3.239 4 C -0.136 4.136 5 C 0.025 3.975 6 Cl -0.048 7.048 7 C -0.191 4.191 8 C 0.159 3.841 9 O -0.304 6.304 10 C 0.054 3.946 11 C -0.082 4.082 12 H 0.074 0.926 13 C -0.103 4.103 14 C -0.114 4.114 15 C 0.101 3.899 16 H 0.064 0.936 17 O -0.592 6.592 18 C -0.147 4.147 19 C -0.108 4.108 20 C -0.076 4.076 21 Cl -0.050 7.050 22 C -0.060 4.060 23 H 0.386 0.614 24 H 0.123 0.877 25 H -0.296 1.296 26 H -0.269 1.269 27 H 0.165 0.835 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.393 0.607 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -1.078 -0.767 3.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.186 4.186 3 Si 0.665 3.335 4 C -0.138 4.138 5 C -0.003 4.003 6 Cl -0.019 7.019 7 C -0.210 4.210 8 C 0.111 3.889 9 O -0.217 6.217 10 C -0.020 4.020 11 C -0.101 4.101 12 H 0.093 0.907 13 C -0.141 4.141 14 C -0.152 4.152 15 C 0.042 3.958 16 H 0.082 0.918 17 O -0.400 6.400 18 C -0.185 4.185 19 C -0.146 4.146 20 C -0.103 4.103 21 Cl -0.021 7.021 22 C -0.079 4.079 23 H 0.235 0.765 24 H 0.141 0.859 25 H -0.223 1.223 26 H -0.195 1.195 27 H 0.183 0.817 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.428 -0.693 -1.045 2.732 hybrid contribution -0.614 -0.121 0.478 0.788 sum 1.814 -0.814 -0.566 2.067 Atomic orbital electron populations 1.86634 1.17630 1.80266 1.49969 1.25146 0.84089 1.11885 0.97466 0.94055 0.90331 0.71821 0.77342 1.20013 1.03753 0.92088 0.97954 1.20695 0.97622 0.91677 0.90281 1.98417 1.83908 1.73637 1.45955 1.21240 1.05194 1.02019 0.92566 1.18543 0.93391 0.90156 0.86830 1.86184 1.77387 1.22906 1.35229 1.23223 1.02400 0.76488 0.99913 1.21170 0.96734 0.96191 0.95978 0.90709 1.21437 1.02409 0.92902 0.97328 1.21465 0.93863 1.01602 0.98225 1.21927 0.95063 0.92750 0.86040 0.91806 1.86481 1.30498 1.82479 1.40563 1.22209 1.01838 0.96042 0.98416 1.21476 0.94484 1.01332 0.97296 1.20288 1.07667 0.89391 0.92970 1.98400 1.84666 1.73024 1.46022 1.20954 0.95674 1.01275 0.89974 0.76468 0.85901 1.22310 1.19519 0.81730 0.89902 0.90245 0.90033 0.89872 0.91206 0.92191 0.75756 0.92300 0.90825 0.90822 0.91672 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.71 12.82 -148.98 -1.91 -2.62 16 2 C -0.08 0.10 2.09 71.24 0.15 0.25 16 3 Si 0.76 -2.39 30.24 68.60 2.07 -0.31 16 4 C -0.14 0.11 5.26 -19.83 -0.10 0.01 16 5 C 0.02 0.01 6.31 22.31 0.14 0.15 16 6 Cl -0.05 -0.08 27.58 -2.72 -0.08 -0.15 16 7 C -0.19 0.24 8.82 22.38 0.20 0.44 16 8 C 0.16 0.09 6.68 22.52 0.15 0.24 16 9 O -0.30 -0.07 9.13 -92.66 -0.85 -0.92 16 10 C 0.05 -0.27 4.12 71.98 0.30 0.03 16 11 C -0.08 0.35 2.43 -10.79 -0.03 0.33 16 12 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 13 C -0.10 0.60 5.20 30.60 0.16 0.76 16 14 C -0.11 0.18 5.57 30.59 0.17 0.35 16 15 C 0.10 -0.14 3.47 30.59 0.11 -0.04 16 16 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 17 O -0.59 -1.06 13.32 -148.98 -1.98 -3.05 16 18 C -0.15 0.35 5.54 30.58 0.17 0.52 16 19 C -0.11 0.37 5.10 30.58 0.16 0.53 16 20 C -0.08 -0.09 6.33 22.41 0.14 0.05 16 21 Cl -0.05 -0.13 28.50 -2.72 -0.08 -0.21 16 22 C -0.06 0.08 8.43 22.27 0.19 0.26 16 23 H 0.39 -1.73 8.70 -74.06 -0.64 -2.37 16 24 H 0.12 -0.19 7.40 -2.39 -0.02 -0.21 16 25 H -0.30 -1.31 7.11 99.48 0.71 -0.60 16 26 H -0.27 0.22 6.68 99.48 0.66 0.89 16 27 H 0.17 -0.83 6.30 -2.91 -0.02 -0.85 16 28 H 0.08 -0.62 7.66 -2.39 -0.02 -0.64 16 29 H 0.08 -0.55 7.66 -2.39 -0.02 -0.57 16 30 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.39 -2.32 9.08 -74.05 -0.67 -2.99 16 35 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.06 -0.06 7.82 -2.39 -0.02 -0.07 16 39 H 0.16 -0.65 4.85 -2.91 -0.01 -0.66 16 Total: 0.00 -12.69 343.51 -1.15 -13.84 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: -0.23 Total: -10.46 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 1.89 Total: 3.88 kcal Atomic # 8 Polarization: -1.85 SS G_CDS: -4.74 Total: -6.59 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.07 Total: -0.31 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.15 Total: -0.36 kcal Total: -12.69 -1.15 -13.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7874536_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.263 kcal (2) G-P(sol) polarization free energy of solvation -12.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds