Wall clock time and date at job start Mon Mar 8 2021 08:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00000 * 2 1 4 4 C 1.53002 * 112.84760 * 65.90025 * 3 2 1 5 5 F 1.39905 * 109.47053 * 283.58121 * 4 3 2 6 6 F 1.39902 * 109.47355 * 43.58184 * 4 3 2 7 7 F 1.39895 * 109.47294 * 163.58201 * 4 3 2 8 8 C 1.53779 * 113.61471 * 294.70408 * 3 2 1 9 9 C 1.53781 * 87.07957 * 270.88156 * 8 3 2 10 10 H 1.09000 * 113.61226 * 220.01784 * 9 8 3 11 11 C 1.52997 * 113.60994 * 89.20087 * 9 8 3 12 12 O 1.42907 * 109.46493 * 176.52601 * 11 9 8 13 13 C 1.35922 * 116.99697 * 179.97438 * 12 11 9 14 14 C 1.38821 * 120.05420 * 179.72536 * 13 12 11 15 15 Cl 1.73601 * 120.02140 * 359.97438 * 14 13 12 16 16 C 1.38265 * 119.95160 * 179.69686 * 14 13 12 17 17 C 1.38228 * 120.05126 * 0.58154 * 16 14 13 18 18 C 1.50698 * 119.94576 * 179.74289 * 17 16 14 19 19 O 1.42903 * 109.47193 * 254.97567 * 18 17 16 20 20 Si 1.86303 * 109.47288 * 14.97362 * 18 17 16 21 21 C 1.38396 * 120.11083 * 359.71843 * 17 16 14 22 22 Cl 1.73594 * 119.97729 * 180.02562 * 21 17 16 23 23 C 1.38268 * 120.04416 * 359.97438 * 21 17 16 24 24 C 1.53774 * 87.08295 * 334.56748 * 9 8 3 25 25 H 1.09001 * 109.47061 * 296.94202 * 1 2 3 26 26 H 1.08994 * 109.47470 * 56.94489 * 1 2 3 27 27 H 1.09002 * 109.47118 * 176.94958 * 1 2 3 28 28 H 1.09005 * 113.60970 * 156.33090 * 8 3 2 29 29 H 1.08999 * 113.61315 * 25.43274 * 8 3 2 30 30 H 1.08998 * 109.47714 * 296.52495 * 11 9 8 31 31 H 1.09003 * 109.47352 * 56.53311 * 11 9 8 32 32 H 1.07993 * 119.97090 * 180.27592 * 16 14 13 33 33 H 1.08997 * 109.47560 * 134.97854 * 18 17 16 34 34 H 0.96703 * 113.99792 * 59.99832 * 19 18 17 35 35 H 1.48507 * 109.99629 * 58.68443 * 20 18 17 36 36 H 1.48494 * 109.99960 * 180.02562 * 20 18 17 37 37 H 1.08001 * 120.02307 * 179.97438 * 23 21 17 38 38 H 1.08995 * 113.61950 * 139.97784 * 24 9 8 39 39 H 1.09001 * 113.61969 * 270.88756 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7259 2.0824 1.2871 5 9 0.4091 2.5544 1.2656 6 9 1.9010 1.2388 2.3894 7 9 2.6076 3.1643 1.3832 8 6 1.7228 2.1078 -1.2801 9 6 2.9995 1.4813 -1.8652 10 1 3.5970 2.1772 -2.4542 11 6 2.7565 0.1521 -2.5828 12 8 3.9803 -0.3088 -3.1590 13 6 3.9382 -1.4860 -3.8372 14 6 5.0893 -1.9900 -4.4272 15 17 6.5843 -1.1168 -4.3001 16 6 5.0454 -3.1908 -5.1112 17 6 3.8540 -3.8834 -5.2181 18 6 3.8076 -5.1891 -5.9691 19 8 3.1773 -4.9880 -7.2357 20 14 5.5421 -5.8167 -6.2313 21 6 2.7036 -3.3801 -4.6361 22 17 1.2094 -4.2531 -4.7719 23 6 2.7440 -2.1828 -3.9456 24 6 3.4904 1.3208 -0.4168 25 1 -0.3633 0.4656 0.9161 26 1 -0.3634 0.5605 -0.8613 27 1 -0.3633 -1.0262 -0.0547 28 1 1.7893 3.1871 -1.1430 29 1 0.8112 1.8005 -1.7925 30 1 2.3911 -0.5853 -1.8680 31 1 2.0154 0.2940 -3.3694 32 1 5.9416 -3.5854 -5.5665 33 1 3.2401 -5.9198 -5.3929 34 1 3.6295 -4.3484 -7.8029 35 1 6.2192 -5.9997 -4.9223 36 1 5.5101 -7.1036 -6.9715 37 1 1.8460 -1.7901 -3.4919 38 1 4.0057 0.3783 -0.2322 39 1 4.0401 2.1850 -0.0437 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7874536_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:32:59 Heat of formation + Delta-G solvation = -205.017060 kcal Electronic energy + Delta-G solvation = -32204.564427 eV Core-core repulsion = 26946.027756 eV Total energy + Delta-G solvation = -5258.536671 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.034 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.26537 -48.79881 -48.74004 -41.88245 -41.13663 -39.36425 -37.82419 -37.59059 -37.17645 -36.80947 -32.30779 -31.92751 -30.44621 -28.23690 -27.61481 -26.78875 -26.27690 -24.46143 -23.24310 -22.64041 -20.62258 -19.96959 -19.58907 -19.47583 -19.22221 -18.39201 -17.76206 -17.34978 -17.02151 -16.83142 -16.50492 -16.32602 -15.92824 -15.83123 -15.66822 -15.60347 -15.49358 -15.45110 -15.18699 -14.96985 -14.90412 -14.70300 -14.50651 -14.29457 -14.15510 -13.81906 -13.60854 -13.40331 -13.18925 -12.99305 -12.71092 -12.56167 -12.49249 -12.17815 -12.04433 -12.02446 -11.93482 -11.78117 -11.67287 -11.60989 -10.82297 -10.48169 -10.06359 -9.35409 -5.03991 -0.29313 -0.09518 0.86843 1.08757 1.24534 1.52692 1.63507 1.82799 1.96081 2.07862 2.15337 2.55926 2.62026 2.88792 3.29751 3.33971 3.36656 3.43172 3.51483 3.61624 3.73974 3.76095 4.05096 4.21260 4.22740 4.24530 4.29045 4.33723 4.36184 4.46913 4.50503 4.56975 4.62842 4.67458 4.70775 4.80216 4.83224 4.92310 5.02141 5.17726 5.70021 6.04689 6.78713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.345 6.345 3 C 0.035 3.965 4 C 0.431 3.569 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.177 7.177 8 C -0.133 4.133 9 C -0.091 4.091 10 H 0.117 0.883 11 C 0.061 3.939 12 O -0.301 6.301 13 C 0.158 3.842 14 C -0.075 4.075 15 Cl -0.044 7.044 16 C -0.051 4.051 17 C -0.143 4.143 18 C -0.067 4.067 19 O -0.544 6.544 20 Si 0.769 3.231 21 C 0.021 3.979 22 Cl -0.052 7.052 23 C -0.191 4.191 24 C -0.115 4.115 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.106 0.894 34 H 0.396 0.604 35 H -0.282 1.282 36 H -0.292 1.292 37 H 0.162 0.838 38 H 0.089 0.911 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 3.024 -3.439 4.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.263 6.263 3 C -0.007 4.007 4 C 0.377 3.623 5 F -0.166 7.166 6 F -0.171 7.171 7 F -0.158 7.158 8 C -0.170 4.170 9 C -0.109 4.109 10 H 0.135 0.865 11 C -0.013 4.013 12 O -0.214 6.214 13 C 0.110 3.890 14 C -0.102 4.102 15 Cl -0.015 7.015 16 C -0.069 4.069 17 C -0.144 4.144 18 C -0.177 4.177 19 O -0.352 6.352 20 Si 0.673 3.327 21 C -0.006 4.006 22 Cl -0.022 7.022 23 C -0.211 4.211 24 C -0.152 4.152 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.123 0.877 34 H 0.246 0.754 35 H -0.208 1.208 36 H -0.219 1.219 37 H 0.179 0.821 38 H 0.108 0.892 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.427 1.942 -2.967 3.572 hybrid contribution -1.230 0.151 1.181 1.712 sum -0.803 2.093 -1.786 2.867 Atomic orbital electron populations 1.23286 0.78754 1.05280 1.01851 1.88075 1.22015 1.22372 1.93832 1.24218 1.00599 0.86308 0.89616 1.21565 0.74137 0.78732 0.87884 1.93184 1.37163 1.89419 1.96831 1.93188 1.95038 1.71171 1.57686 1.93171 1.68915 1.57108 1.96607 1.23632 0.99831 1.01501 0.92016 1.22003 0.97930 0.96007 0.94984 0.86485 1.23035 0.84530 0.96113 0.97641 1.86144 1.36250 1.33513 1.65526 1.18520 0.92016 0.86456 0.91971 1.20296 0.87492 0.96506 1.05916 1.98404 1.30452 1.75648 1.97044 1.20845 0.97935 0.91574 0.96551 1.20140 0.91781 0.99576 1.02933 1.25104 1.10973 0.95390 0.86259 1.86533 1.56043 1.66836 1.25799 0.94047 0.74716 0.82382 0.81546 1.20708 0.88052 0.93522 0.98329 1.98412 1.31724 1.75490 1.96614 1.21213 0.98567 0.96006 1.05267 1.23330 0.90521 1.05677 0.95637 0.93857 0.90853 0.87013 0.85811 0.87303 0.89803 0.89518 0.80997 0.87653 0.75450 1.20806 1.21912 0.82055 0.89242 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.33 113.37 1.17 1.15 16 2 O -0.34 0.45 8.34 -148.98 -1.24 -0.79 16 3 C 0.04 -0.10 0.85 -10.27 -0.01 -0.11 16 4 C 0.43 0.63 2.51 71.98 0.18 0.81 16 5 F -0.18 -0.35 15.37 44.97 0.69 0.34 16 6 F -0.19 -1.13 17.09 44.97 0.77 -0.36 16 7 F -0.18 -0.28 15.83 44.97 0.71 0.43 16 8 C -0.13 1.04 6.51 31.12 0.20 1.24 16 9 C -0.09 0.61 4.19 -10.27 -0.04 0.57 16 10 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C 0.06 -0.31 4.34 71.98 0.31 0.00 16 12 O -0.30 0.14 9.60 -92.67 -0.89 -0.75 16 13 C 0.16 0.04 6.68 22.52 0.15 0.19 16 14 C -0.07 -0.02 6.33 22.42 0.14 0.13 16 15 Cl -0.04 -0.04 28.50 -2.72 -0.08 -0.12 16 16 C -0.05 0.13 8.44 22.27 0.19 0.31 16 17 C -0.14 0.12 5.26 -19.83 -0.10 0.01 16 18 C -0.07 0.08 2.09 71.24 0.15 0.22 16 19 O -0.54 0.59 12.82 -148.98 -1.91 -1.32 16 20 Si 0.77 -2.39 29.91 68.60 2.05 -0.33 16 21 C 0.02 0.02 6.31 22.31 0.14 0.16 16 22 Cl -0.05 -0.13 27.58 -2.72 -0.08 -0.20 16 23 C -0.19 0.16 8.82 22.38 0.20 0.36 16 24 C -0.11 0.46 6.90 31.12 0.21 0.68 16 25 H 0.04 -0.10 6.59 -2.39 -0.02 -0.12 16 26 H 0.07 -0.63 6.60 -2.39 -0.02 -0.65 16 27 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.12 -1.17 8.06 -2.38 -0.02 -1.19 16 29 H 0.11 -1.14 6.64 -2.39 -0.02 -1.15 16 30 H 0.08 -0.34 5.61 -2.39 -0.01 -0.35 16 31 H 0.09 -0.71 7.66 -2.39 -0.02 -0.72 16 32 H 0.17 -1.29 5.12 -2.91 -0.01 -1.31 16 33 H 0.11 0.14 7.40 -2.39 -0.02 0.12 16 34 H 0.40 -3.77 8.70 -74.06 -0.64 -4.41 16 35 H -0.28 -0.54 7.11 99.48 0.71 0.16 16 36 H -0.29 -1.23 7.11 99.48 0.71 -0.52 16 37 H 0.16 -0.67 6.30 -2.91 -0.02 -0.69 16 38 H 0.09 -0.17 8.10 -2.39 -0.02 -0.18 16 39 H 0.12 -0.68 7.01 -2.39 -0.02 -0.70 16 Total: 0.00 -14.31 358.92 3.47 -10.84 By element: Atomic # 1 Polarization: -14.01 SS G_CDS: 0.55 Total: -13.47 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 2.89 Total: 5.73 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: -4.04 Total: -2.86 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 2.17 Total: 0.41 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.05 Total: -0.33 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.15 Total: -0.32 kcal Total: -14.31 3.47 -10.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7874536_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.177 kcal (2) G-P(sol) polarization free energy of solvation -14.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds