Wall clock time and date at job start Mon Mar 8 2021 08:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35925 * 116.99722 * 180.02562 * 12 11 10 14 14 C 1.38647 * 120.05600 * 359.97438 * 13 12 11 15 15 C 1.38297 * 119.94871 * 180.02562 * 14 13 12 16 16 Cl 1.73603 * 119.97720 * 180.02562 * 15 14 13 17 17 C 1.38353 * 120.05176 * 359.97438 * 15 14 13 18 18 C 1.50702 * 119.95007 * 179.97438 * 17 15 14 19 19 O 1.42901 * 109.46927 * 284.99752 * 18 17 15 20 20 Si 1.86295 * 109.47038 * 164.99466 * 18 17 15 21 21 H 1.48502 * 109.47043 * 59.99966 * 20 18 17 22 22 H 1.48496 * 109.47130 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47356 * 299.99818 * 20 18 17 24 24 C 1.38273 * 120.10273 * 0.02562 * 17 15 14 25 25 C 1.38217 * 120.05375 * 359.72865 * 24 17 15 26 26 Cl 1.73604 * 120.02423 * 180.29742 * 25 24 17 27 27 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 28 28 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 34 34 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 35 35 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 38 38 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 39 39 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 40 40 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 41 41 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 43 43 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 44 44 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 45 45 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 46 46 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 47 47 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 48 48 H 1.08004 * 120.02624 * 359.97438 * 14 13 12 49 49 H 1.08999 * 109.46749 * 44.99380 * 18 17 15 50 50 H 0.96704 * 113.99888 * 299.99797 * 19 18 17 51 51 H 1.07999 * 119.97371 * 180.02562 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6978 -7.6068 4.6627 14 6 2.4935 -7.1882 5.7182 15 6 2.8077 -8.0686 6.7374 16 17 3.8034 -7.5451 8.0597 17 6 2.3282 -9.3660 6.7047 18 6 2.6725 -10.3236 7.8162 19 8 4.0281 -10.7524 7.6727 20 14 1.5416 -11.8018 7.7349 21 1 1.7096 -12.4821 6.4256 22 1 1.8812 -12.7457 8.8298 23 1 0.1329 -11.3562 7.8840 24 6 1.5345 -9.7857 5.6531 25 6 1.2137 -8.9079 4.6347 26 17 0.2107 -9.4334 3.3188 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8938 -0.5134 3.9323 37 1 1.8934 1.0279 3.0423 38 1 0.4400 0.0002 3.0423 39 1 4.3777 -1.3911 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3774 -1.3909 2.4118 42 1 1.6655 -2.7116 3.5652 43 1 3.1185 -3.2254 2.6746 44 1 1.8274 -5.0693 1.6337 45 1 0.3749 -4.5551 2.5246 46 1 3.0051 -5.4633 3.7796 47 1 1.5528 -4.9492 4.6711 48 1 2.8684 -6.1757 5.7440 49 1 2.5492 -9.8242 8.7772 50 1 4.2109 -11.2060 6.8385 51 1 1.1610 -10.7988 5.6298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7874536_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:57:35 Heat of formation + Delta-G solvation = -156.769560 kcal Electronic energy + Delta-G solvation = -29785.609118 eV Core-core repulsion = 25474.470723 eV Total energy + Delta-G solvation = -4311.138395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 394.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61669 -39.61801 -38.22839 -37.80997 -37.56973 -36.96563 -36.82473 -33.66914 -32.21641 -31.53699 -29.37127 -29.05261 -27.84105 -27.37406 -27.31264 -26.07136 -24.37346 -22.80533 -22.32714 -20.42095 -19.72989 -18.45809 -18.08217 -17.57177 -17.34081 -16.99223 -16.46469 -16.22331 -15.99463 -15.94758 -15.70561 -15.31758 -14.98922 -14.87523 -14.83269 -14.69291 -14.61199 -14.00822 -13.93472 -13.72787 -13.50174 -13.38449 -13.29927 -13.26542 -13.13532 -12.95397 -12.93996 -12.84268 -12.59108 -12.39803 -12.25218 -12.21289 -12.12280 -12.02489 -11.90705 -11.75726 -11.69566 -11.67883 -11.62819 -11.34305 -11.28699 -10.45576 -10.29822 -10.08674 -10.05141 -9.38048 -0.31427 -0.12305 0.86143 1.05327 1.11916 1.41519 1.41768 1.51869 1.79028 1.90616 1.98057 2.13029 2.14089 2.51759 3.33962 3.45785 3.63015 3.71994 3.88836 3.91357 4.00088 4.12149 4.12800 4.13807 4.24026 4.35566 4.36749 4.38197 4.46568 4.47272 4.59010 4.64391 4.75668 4.76373 4.79397 4.80719 4.82794 4.82885 4.92091 5.00250 5.04705 5.06395 5.09309 5.09681 5.16981 5.22327 5.35220 5.41145 5.45031 5.56122 5.62026 5.65871 6.05649 6.71140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.319 2.681 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.641 6.641 9 C 0.079 3.921 10 C -0.120 4.120 11 C 0.048 3.952 12 O -0.308 6.308 13 C 0.157 3.843 14 C -0.189 4.189 15 C 0.027 3.973 16 Cl -0.043 7.043 17 C -0.140 4.140 18 C -0.074 4.074 19 O -0.541 6.541 20 Si 0.967 3.033 21 H -0.240 1.240 22 H -0.266 1.266 23 H -0.253 1.253 24 C -0.069 4.069 25 C -0.077 4.077 26 Cl -0.052 7.052 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.170 0.830 49 H 0.122 0.878 50 H 0.389 0.611 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 1.602 1.244 2.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.449 2.551 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.600 6.600 9 C 0.004 3.996 10 C -0.158 4.158 11 C -0.027 4.027 12 O -0.221 6.221 13 C 0.109 3.891 14 C -0.208 4.208 15 C -0.001 4.001 16 Cl -0.014 7.014 17 C -0.142 4.142 18 C -0.184 4.184 19 O -0.348 6.348 20 Si 0.789 3.211 21 H -0.163 1.163 22 H -0.191 1.191 23 H -0.177 1.177 24 C -0.087 4.087 25 C -0.104 4.104 26 Cl -0.023 7.023 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.188 0.812 49 H 0.140 0.860 50 H 0.238 0.762 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.539 0.964 1.446 1.819 hybrid contribution 0.366 0.830 -0.583 1.078 sum 0.905 1.794 0.863 2.187 Atomic orbital electron populations 1.21541 0.94369 1.01710 1.01801 1.25981 1.00344 1.03103 1.13414 1.21602 1.01300 0.94699 1.02173 1.21542 1.01034 0.99978 0.96869 0.76127 0.62514 0.52562 0.63888 1.27097 1.06835 1.09868 1.18167 1.27097 1.25161 1.05046 1.04666 1.85322 1.79714 1.46691 1.48296 1.22015 0.99253 0.90902 0.87436 1.21470 1.02882 0.93745 0.97672 1.23067 0.99944 0.79172 1.00493 1.86173 1.70603 1.23087 1.42263 1.18528 0.93570 0.88838 0.88157 1.21286 1.03189 1.02481 0.93861 1.20667 0.94996 0.93495 0.90924 1.98418 1.67274 1.90181 1.45536 1.20126 1.00922 0.94737 0.98389 1.24958 0.91328 1.03288 0.98871 1.86549 1.25306 1.78694 1.44272 0.85449 0.77817 0.76621 0.81170 1.16330 1.19101 1.17721 1.20947 0.96521 1.00033 0.91238 1.20308 1.02786 0.92799 0.94532 1.98399 1.67262 1.90088 1.46553 0.92045 0.93486 0.92599 0.91758 0.93295 0.91756 0.92595 0.93492 0.92041 0.90695 0.90443 0.91246 0.91244 0.90440 0.90696 0.90635 0.90632 0.90487 0.90478 0.89475 0.89446 0.81225 0.85983 0.76159 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 2 C -0.39 0.38 0.53 -10.79 -0.01 0.38 16 3 C -0.14 0.25 7.85 71.98 0.56 0.82 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 5 Si 1.32 -5.12 8.45 68.60 0.58 -4.54 16 6 C -0.52 1.92 8.50 113.37 0.96 2.89 16 7 C -0.52 1.92 8.50 113.37 0.96 2.88 16 8 O -0.64 0.88 8.56 -148.98 -1.28 -0.39 16 9 C 0.08 -0.43 5.12 71.98 0.37 -0.06 16 10 C -0.12 0.43 5.95 30.59 0.18 0.61 16 11 C 0.05 -0.25 4.74 71.98 0.34 0.09 16 12 O -0.31 -0.33 9.60 -92.71 -0.89 -1.22 16 13 C 0.16 0.18 6.68 22.52 0.15 0.33 16 14 C -0.19 0.28 8.82 22.38 0.20 0.48 16 15 C 0.03 0.00 6.31 22.31 0.14 0.14 16 16 Cl -0.04 -0.03 27.58 -2.72 -0.08 -0.11 16 17 C -0.14 0.07 5.26 -19.83 -0.10 -0.03 16 18 C -0.07 0.14 2.09 71.24 0.15 0.29 16 19 O -0.54 0.62 12.83 -148.98 -1.91 -1.29 16 20 Si 0.97 -2.38 25.49 68.60 1.75 -0.63 16 21 H -0.24 0.90 6.73 99.48 0.67 1.57 16 22 H -0.27 -0.24 7.11 99.48 0.71 0.47 16 23 H -0.25 0.25 7.11 99.48 0.71 0.96 16 24 C -0.07 0.01 8.44 22.27 0.19 0.20 16 25 C -0.08 -0.18 6.33 22.41 0.14 -0.03 16 26 Cl -0.05 -0.20 28.50 -2.72 -0.08 -0.28 16 27 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 28 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.05 0.06 7.96 -2.38 -0.02 0.04 16 30 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 31 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 34 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 35 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 36 H 0.07 -0.40 7.48 -2.39 -0.02 -0.41 16 37 H 0.08 -0.31 7.79 -2.38 -0.02 -0.33 16 38 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 40 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 41 H 0.07 -0.39 7.48 -2.38 -0.02 -0.41 16 42 H 0.08 -0.67 7.21 -2.39 -0.02 -0.69 16 43 H 0.08 -0.67 7.21 -2.39 -0.02 -0.69 16 44 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 46 H 0.09 -0.75 7.66 -2.39 -0.02 -0.76 16 47 H 0.09 -0.75 7.66 -2.39 -0.02 -0.77 16 48 H 0.17 -1.06 6.30 -2.91 -0.02 -1.07 16 49 H 0.12 -0.26 7.40 -2.39 -0.02 -0.28 16 50 H 0.39 -3.03 8.70 -74.05 -0.64 -3.68 16 51 H 0.16 -0.45 4.88 -2.91 -0.01 -0.46 16 Total: 0.00 -11.01 433.73 4.47 -6.54 By element: Atomic # 1 Polarization: -9.13 SS G_CDS: 1.00 Total: -8.13 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.37 Total: 10.05 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: -4.08 Total: -2.90 kcal Atomic # 14 Polarization: -7.49 SS G_CDS: 2.33 Total: -5.17 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.15 Total: -0.39 kcal Total: -11.01 4.47 -6.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7874536_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.233 kcal (2) G-P(sol) polarization free energy of solvation -11.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds