Wall clock time and date at job start Mon Mar 8 2021 09:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86298 * 109.47251 * 2 1 4 4 C 1.86305 * 109.47029 * 239.99949 * 2 1 3 5 5 C 1.86796 * 109.46874 * 120.00285 * 2 1 3 6 6 C 1.38230 * 120.00645 * 90.00035 * 5 2 1 7 7 C 1.38236 * 120.00703 * 180.02562 * 6 5 2 8 8 C 1.38236 * 119.99443 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99684 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47176 * 89.99931 * 9 8 7 11 11 C 1.35922 * 117.00228 * 179.97438 * 10 9 8 12 12 C 1.38655 * 120.05149 * 359.97438 * 11 10 9 13 13 C 1.38305 * 119.94308 * 180.02562 * 12 11 10 14 14 Cl 1.73605 * 119.97154 * 180.02562 * 13 12 11 15 15 C 1.38343 * 120.05260 * 0.02562 * 13 12 11 16 16 C 1.50703 * 119.95052 * 180.02562 * 15 13 12 17 17 O 1.42903 * 109.46861 * 285.00003 * 16 15 13 18 18 Si 1.86292 * 109.47310 * 164.99525 * 16 15 13 19 19 H 1.48500 * 109.47009 * 60.00261 * 18 16 15 20 20 H 1.48503 * 109.47080 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47351 * 299.99996 * 18 16 15 22 22 C 1.38278 * 120.10430 * 0.02562 * 15 13 12 23 23 C 1.38209 * 120.05793 * 0.02562 * 22 15 13 24 24 Cl 1.73596 * 120.02710 * 179.97438 * 23 22 15 25 25 C 1.38234 * 120.00011 * 0.25046 * 8 7 6 26 26 C 1.38230 * 120.00187 * 359.49838 * 25 8 7 27 27 H 1.08996 * 109.46976 * 300.00133 * 1 2 3 28 28 H 1.09003 * 109.47115 * 60.00052 * 1 2 3 29 29 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47088 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47018 * 300.00007 * 3 2 1 32 32 H 1.09001 * 109.46859 * 59.99762 * 3 2 1 33 33 H 1.09003 * 109.46701 * 300.00045 * 4 2 1 34 34 H 1.08993 * 109.47202 * 60.00093 * 4 2 1 35 35 H 1.08994 * 109.46996 * 180.02562 * 4 2 1 36 36 H 1.08007 * 119.99885 * 359.97438 * 6 5 2 37 37 H 1.07994 * 120.00540 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47214 * 329.99787 * 9 8 7 39 39 H 1.09006 * 109.47143 * 209.99386 * 9 8 7 40 40 H 1.08002 * 120.02690 * 0.29452 * 12 11 10 41 41 H 1.09002 * 109.47055 * 44.99253 * 16 15 13 42 42 H 0.96704 * 113.99649 * 299.99339 * 17 16 15 43 43 H 1.08002 * 119.96794 * 179.97438 * 22 15 13 44 44 H 1.08008 * 119.99586 * 179.72273 * 25 8 7 45 45 H 1.08002 * 120.00144 * 180.22701 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4856 -0.8807 1.5252 6 6 2.7160 -2.2432 1.4910 7 6 3.1763 -2.8950 2.6198 8 6 3.4056 -2.1842 3.7831 9 6 3.9067 -2.8948 5.0139 10 8 5.3358 -2.8949 5.0152 11 6 5.9519 -3.5002 6.0647 12 6 5.1969 -4.0812 7.0721 13 6 5.8261 -4.6960 8.1393 14 17 4.8815 -5.4242 9.4007 15 6 7.2077 -4.7311 8.2024 16 6 7.8909 -5.4021 9.3660 17 8 7.7950 -4.5663 10.5212 18 14 9.6850 -5.6868 8.9527 19 1 10.3422 -4.3840 8.6770 20 1 10.3583 -6.3475 10.0995 21 1 9.7846 -6.5553 7.7522 22 6 7.9627 -4.1514 7.1994 23 6 7.3385 -3.5349 6.1314 24 17 8.2871 -2.8068 4.8730 25 6 3.1697 -0.8226 3.8189 26 6 2.7145 -0.1700 2.6886 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1207 2.2703 -0.8900 32 1 2.1207 2.2702 0.8900 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3645 -2.4111 35 1 3.5740 -0.8787 -1.5209 36 1 2.5357 -2.7988 0.5825 37 1 3.3559 -3.9596 2.5933 38 1 3.5434 -3.9225 5.0134 39 1 3.5427 -2.3811 5.9037 40 1 4.1183 -4.0574 7.0213 41 1 7.4085 -6.3583 9.5684 42 1 8.2043 -3.6969 10.4127 43 1 9.0411 -4.1797 7.2510 44 1 3.3447 -0.2681 4.7291 45 1 2.5337 0.8945 2.7156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_7874536_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:18:29 Heat of formation + Delta-G solvation = -66.112612 kcal Electronic energy + Delta-G solvation = -27164.031776 eV Core-core repulsion = 23129.215048 eV Total energy + Delta-G solvation = -4034.816727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 384.063 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71037 -40.23073 -39.22169 -37.86663 -37.59868 -36.98906 -33.29873 -32.24017 -31.88840 -31.55607 -29.45070 -28.30407 -28.27548 -27.72300 -26.31800 -24.35803 -23.49822 -22.84449 -21.98245 -19.80104 -18.53825 -18.19877 -17.27606 -17.22117 -17.01299 -16.43003 -16.10200 -15.97822 -15.77993 -15.61372 -15.09836 -14.85955 -14.42956 -14.31155 -14.23371 -14.06399 -13.98973 -13.80841 -13.73410 -13.54623 -13.52024 -13.14597 -13.12625 -13.08543 -12.97469 -12.63035 -12.52948 -12.46639 -12.22633 -12.06817 -11.95206 -11.92351 -11.71460 -11.70121 -10.93279 -10.78521 -10.76660 -10.47594 -10.12758 -9.81130 -9.70494 -9.42177 -0.35231 -0.16225 0.12740 0.51715 0.82533 1.02587 1.09988 1.40234 1.50552 1.82188 1.87804 1.89265 2.01540 2.09138 2.19142 2.66002 2.98174 3.29903 3.41416 3.56901 3.68812 3.73163 3.77601 3.99593 4.08668 4.17105 4.21476 4.26590 4.35938 4.52244 4.54185 4.61375 4.70380 4.84004 4.84246 4.87983 4.88523 4.88529 4.88939 4.90150 4.99332 5.09763 5.15218 5.38762 5.55466 5.58612 5.58741 5.67435 5.69943 5.97142 6.11471 6.69370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.105 4.105 7 C -0.120 4.120 8 C -0.103 4.103 9 C 0.094 3.906 10 O -0.304 6.304 11 C 0.155 3.845 12 C -0.190 4.190 13 C 0.028 3.972 14 Cl -0.043 7.043 15 C -0.139 4.139 16 C -0.075 4.075 17 O -0.541 6.541 18 Si 0.968 3.032 19 H -0.239 1.239 20 H -0.265 1.265 21 H -0.253 1.253 22 C -0.068 4.068 23 C -0.075 4.075 24 Cl -0.052 7.052 25 C -0.120 4.120 26 C -0.104 4.104 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.166 0.834 41 H 0.122 0.878 42 H 0.389 0.611 43 H 0.160 0.840 44 H 0.129 0.871 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 0.975 -1.737 2.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.103 4.103 9 C 0.020 3.980 10 O -0.217 6.217 11 C 0.107 3.893 12 C -0.209 4.209 13 C 0.000 4.000 14 Cl -0.014 7.014 15 C -0.140 4.140 16 C -0.185 4.185 17 O -0.348 6.348 18 Si 0.790 3.210 19 H -0.163 1.163 20 H -0.190 1.190 21 H -0.177 1.177 22 C -0.086 4.086 23 C -0.103 4.103 24 Cl -0.023 7.023 25 C -0.138 4.138 26 C -0.122 4.122 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.183 0.817 41 H 0.140 0.860 42 H 0.238 0.762 43 H 0.177 0.823 44 H 0.146 0.854 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.218 0.384 -1.806 2.212 hybrid contribution -0.299 0.316 0.150 0.460 sum -1.517 0.700 -1.655 2.352 Atomic orbital electron populations 1.26268 1.21386 1.04514 1.04612 0.77171 0.65291 0.64536 0.61612 1.26290 1.06324 1.19517 1.04891 1.26291 1.06322 1.08538 1.15872 1.28037 1.02300 0.99624 1.11155 1.21389 0.97410 0.95203 0.98225 1.21387 0.98999 1.00524 0.92899 1.19549 1.01537 0.94481 0.94753 1.21922 0.77005 1.01713 0.97330 1.86281 1.22602 1.71979 1.40827 1.18564 0.90289 0.92701 0.87699 1.21252 1.01921 1.03622 0.94109 1.20657 0.91445 0.97049 0.90831 1.98417 1.71632 1.80855 1.50460 1.20137 0.92115 1.03219 0.98571 1.24981 1.11441 0.96869 0.85223 1.86550 1.82554 1.31044 1.34651 0.85437 0.73879 0.81650 0.80023 1.16278 1.18978 1.17702 1.20957 1.01229 0.95353 0.91077 1.20294 0.89167 1.05971 0.94849 1.98398 1.71208 1.81602 1.51082 1.21387 0.99009 0.93764 0.99651 1.21390 0.97429 1.00739 0.92663 0.91328 0.90670 0.91332 0.91467 0.90644 0.90879 0.90884 0.90646 0.91469 0.84347 0.85357 0.89287 0.89310 0.81666 0.85980 0.76151 0.82301 0.85354 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.13 -6.53 12.32 68.60 0.85 -5.68 16 3 C -0.46 1.91 8.53 113.37 0.97 2.88 16 4 C -0.46 1.91 8.53 113.37 0.97 2.87 16 5 C -0.37 0.31 4.59 22.27 0.10 0.41 16 6 C -0.10 -0.03 9.29 22.27 0.21 0.18 16 7 C -0.12 -0.21 9.70 22.27 0.22 0.01 16 8 C -0.10 -0.21 5.51 -19.87 -0.11 -0.32 16 9 C 0.09 -0.06 4.87 71.24 0.35 0.29 16 10 O -0.30 -1.19 9.58 -92.67 -0.89 -2.08 16 11 C 0.16 0.46 6.68 22.52 0.15 0.61 16 12 C -0.19 -0.08 8.82 22.39 0.20 0.12 16 13 C 0.03 0.04 6.31 22.31 0.14 0.18 16 14 Cl -0.04 -0.09 27.58 -2.72 -0.08 -0.16 16 15 C -0.14 -0.05 5.26 -19.83 -0.10 -0.16 16 16 C -0.07 0.09 2.09 71.24 0.15 0.24 16 17 O -0.54 0.30 12.82 -148.98 -1.91 -1.61 16 18 Si 0.97 -2.00 25.49 68.60 1.75 -0.25 16 19 H -0.24 0.82 6.73 99.48 0.67 1.48 16 20 H -0.27 -0.31 7.11 99.48 0.71 0.40 16 21 H -0.25 0.15 7.11 99.48 0.71 0.86 16 22 C -0.07 -0.05 8.43 22.27 0.19 0.14 16 23 C -0.08 -0.27 6.33 22.41 0.14 -0.12 16 24 Cl -0.05 -0.26 28.50 -2.72 -0.08 -0.34 16 25 C -0.12 -0.21 9.70 22.27 0.22 0.01 16 26 C -0.10 -0.03 9.29 22.27 0.21 0.18 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 30 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 31 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.34 7.69 -2.39 -0.02 -0.36 16 33 H 0.07 -0.34 7.69 -2.39 -0.02 -0.35 16 34 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 35 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 36 H 0.14 -0.52 7.43 -2.91 -0.02 -0.54 16 37 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.09 -0.33 7.60 -2.39 -0.02 -0.35 16 39 H 0.09 -0.32 7.61 -2.38 -0.02 -0.34 16 40 H 0.17 -0.57 6.30 -2.91 -0.02 -0.59 16 41 H 0.12 -0.18 7.40 -2.39 -0.02 -0.20 16 42 H 0.39 -2.82 8.70 -74.05 -0.64 -3.46 16 43 H 0.16 -0.35 4.88 -2.91 -0.01 -0.37 16 44 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 45 H 0.14 -0.52 7.43 -2.91 -0.02 -0.54 16 Total: 0.00 -12.13 404.42 5.70 -6.43 By element: Atomic # 1 Polarization: -7.73 SS G_CDS: 1.09 Total: -6.64 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.96 Total: 10.33 kcal Atomic # 8 Polarization: -0.90 SS G_CDS: -2.80 Total: -3.69 kcal Atomic # 14 Polarization: -8.53 SS G_CDS: 2.59 Total: -5.94 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.15 Total: -0.50 kcal Total: -12.13 5.70 -6.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_7874536_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.678 kcal (2) G-P(sol) polarization free energy of solvation -12.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds