Wall clock time and date at job start Mon Mar 8 2021 09:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00180 * 2 1 4 4 C 1.52996 * 112.84585 * 65.89781 * 3 2 1 5 5 F 1.39905 * 109.47061 * 283.57838 * 4 3 2 6 6 F 1.39896 * 109.47909 * 43.58323 * 4 3 2 7 7 F 1.39904 * 109.46778 * 163.58306 * 4 3 2 8 8 C 1.53783 * 113.61189 * 294.70271 * 3 2 1 9 9 C 1.53780 * 87.07662 * 270.88123 * 8 3 2 10 10 H 1.09004 * 113.61764 * 220.01809 * 9 8 3 11 11 C 1.53001 * 113.61600 * 89.12075 * 9 8 3 12 12 O 1.42894 * 109.47691 * 174.99466 * 11 9 8 13 13 C 1.35915 * 117.00418 * 179.97438 * 12 11 9 14 14 C 1.38705 * 120.04633 * 269.72911 * 13 12 11 15 15 C 1.50703 * 120.01785 * 359.97438 * 14 13 12 16 16 C 1.38166 * 119.95515 * 179.74537 * 14 13 12 17 17 C 1.38342 * 120.04602 * 0.55192 * 16 14 13 18 18 Cl 1.73591 * 119.95914 * 179.72395 * 17 16 14 19 19 C 1.38391 * 120.08378 * 359.69999 * 17 16 14 20 20 C 1.38117 * 120.04240 * 0.02562 * 19 17 16 21 21 C 1.50697 * 120.02252 * 179.97438 * 20 19 17 22 22 O 1.42902 * 109.47299 * 255.02003 * 21 20 19 23 23 Si 1.86297 * 109.47146 * 15.02286 * 21 20 19 24 24 C 1.53773 * 87.08429 * 334.56977 * 9 8 3 25 25 H 1.08991 * 109.47363 * 296.94078 * 1 2 3 26 26 H 1.09008 * 109.46810 * 56.94362 * 1 2 3 27 27 H 1.09005 * 109.47057 * 176.93607 * 1 2 3 28 28 H 1.08994 * 113.61411 * 25.42688 * 8 3 2 29 29 H 1.09005 * 113.61048 * 156.33825 * 8 3 2 30 30 H 1.09002 * 109.46947 * 295.00239 * 11 9 8 31 31 H 1.09005 * 109.47166 * 54.99612 * 11 9 8 32 32 H 1.08996 * 109.46865 * 90.00120 * 15 14 13 33 33 H 1.08999 * 109.46910 * 210.00111 * 15 14 13 34 34 H 1.08994 * 109.47042 * 329.99960 * 15 14 13 35 35 H 1.08007 * 119.97423 * 180.27188 * 16 14 13 36 36 H 1.07992 * 119.97800 * 180.02562 * 19 17 16 37 37 H 1.09000 * 109.47198 * 135.02218 * 21 20 19 38 38 H 0.96700 * 114.00329 * 300.00157 * 22 21 20 39 39 H 1.48500 * 109.99844 * 298.67934 * 23 21 20 40 40 H 1.48501 * 110.00082 * 59.99604 * 23 21 20 41 41 H 1.09007 * 113.61469 * 270.87998 * 24 9 8 42 42 H 1.09003 * 113.61433 * 139.98521 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7259 2.0823 1.2870 5 9 0.4091 2.5544 1.2655 6 9 1.9009 1.2389 2.3893 7 9 2.6077 3.1642 1.3831 8 6 1.7229 2.1077 -1.2801 9 6 2.9996 1.4811 -1.8652 10 1 3.5972 2.1769 -2.4542 11 6 2.7570 0.1508 -2.5810 12 8 3.9725 -0.2925 -3.1875 13 6 3.9296 -1.4681 -3.8682 14 6 4.1986 -2.6604 -3.2125 15 6 4.5394 -2.6534 -1.7445 16 6 4.1493 -3.8550 -3.9051 17 6 3.8431 -3.8613 -5.2542 18 17 3.7889 -5.3628 -6.1237 19 6 3.5796 -2.6723 -5.9113 20 6 3.6223 -1.4766 -5.2212 21 6 3.3358 -0.1820 -5.9374 22 8 4.5595 0.5232 -6.1545 23 14 2.5287 -0.5447 -7.5768 24 6 3.4904 1.3207 -0.4168 25 1 -0.3633 0.4656 0.9160 26 1 -0.3633 0.5606 -0.8614 27 1 -0.3633 -1.0262 -0.0549 28 1 0.8114 1.8003 -1.7926 29 1 1.7895 3.1870 -1.1431 30 1 2.4182 -0.5932 -1.8601 31 1 1.9956 0.2852 -3.3494 32 1 3.6251 -2.7490 -1.1589 33 1 5.2028 -3.4889 -1.5215 34 1 5.0366 -1.7170 -1.4915 35 1 4.3544 -4.7840 -3.3938 36 1 3.3403 -2.6793 -6.9644 37 1 2.6673 0.4287 -5.3306 38 1 5.0348 0.7456 -5.3423 39 1 3.4429 -1.3500 -8.4259 40 1 1.2549 -1.2780 -7.3647 41 1 4.0402 2.1849 -0.0438 42 1 4.0058 0.3781 -0.2322 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8270650_17321602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:38:12 Heat of formation + Delta-G solvation = -206.417229 kcal Electronic energy + Delta-G solvation = -32915.454232 eV Core-core repulsion = 27861.119019 eV Total energy + Delta-G solvation = -5054.335213 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.24366 -48.77788 -48.71901 -41.90232 -41.17374 -38.78206 -37.86298 -37.40436 -36.92470 -34.15725 -31.80607 -30.41750 -28.41063 -28.03793 -27.39410 -26.74825 -26.51446 -23.41626 -23.09077 -22.36917 -20.61917 -19.83977 -19.54121 -19.26300 -19.03285 -18.43745 -17.94032 -17.24516 -17.14963 -16.79846 -16.45559 -15.85587 -15.80731 -15.65999 -15.60091 -15.47186 -15.30257 -15.27901 -15.13923 -14.89022 -14.87016 -14.75399 -14.24318 -14.15955 -13.91965 -13.85442 -13.67004 -13.52179 -13.19009 -13.02522 -13.01827 -12.60773 -12.37819 -12.31312 -12.21004 -12.17258 -11.89992 -11.64903 -11.59209 -11.13850 -10.99623 -10.66255 -10.09433 -9.67763 -4.90272 -0.31475 -0.14395 0.87778 1.27153 1.55266 1.56961 1.89092 1.93448 2.10190 2.46501 2.59556 2.65202 2.92460 3.29986 3.32913 3.39697 3.41625 3.52651 3.76160 3.80180 3.91537 3.96980 4.08362 4.21167 4.24557 4.26907 4.30946 4.37590 4.40540 4.50607 4.55492 4.61856 4.66058 4.69786 4.75172 4.80985 4.84864 4.86391 4.89716 5.05761 5.07183 5.19531 5.35673 5.71891 6.29581 6.59929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.343 6.343 3 C 0.036 3.964 4 C 0.431 3.569 5 F -0.186 7.186 6 F -0.189 7.189 7 F -0.177 7.177 8 C -0.136 4.136 9 C -0.089 4.089 10 H 0.118 0.882 11 C 0.073 3.927 12 O -0.328 6.328 13 C 0.113 3.887 14 C -0.084 4.084 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.039 4.039 18 Cl -0.066 7.066 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.078 4.078 22 O -0.542 6.542 23 Si 0.799 3.201 24 C -0.112 4.112 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.378 0.622 39 H -0.291 1.291 40 H -0.264 1.264 41 H 0.123 0.877 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 3.049 0.453 3.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.261 6.261 3 C -0.007 4.007 4 C 0.376 3.624 5 F -0.167 7.167 6 F -0.170 7.170 7 F -0.158 7.158 8 C -0.174 4.174 9 C -0.107 4.107 10 H 0.136 0.864 11 C 0.000 4.000 12 O -0.245 6.245 13 C 0.069 3.931 14 C -0.085 4.085 15 C -0.168 4.168 16 C -0.117 4.117 17 C -0.066 4.066 18 Cl -0.037 7.037 19 C -0.144 4.144 20 C -0.124 4.124 21 C -0.186 4.186 22 O -0.348 6.348 23 Si 0.701 3.299 24 C -0.149 4.149 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.174 0.826 36 H 0.146 0.854 37 H 0.112 0.888 38 H 0.227 0.773 39 H -0.219 1.219 40 H -0.190 1.190 41 H 0.141 0.859 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.653 2.211 -0.694 3.523 hybrid contribution 0.118 -0.804 1.771 1.949 sum -2.535 1.408 1.077 3.093 Atomic orbital electron populations 1.23255 0.78948 1.05141 1.01706 1.88065 1.21813 1.22415 1.93823 1.24219 1.00804 0.86230 0.89440 1.21593 0.74090 0.78750 0.87934 1.93182 1.37280 1.89437 1.96838 1.93185 1.95031 1.71151 1.57672 1.93173 1.68897 1.57131 1.96613 1.23649 0.99981 1.01476 0.92256 1.22006 0.97585 0.96066 0.95044 0.86356 1.22827 0.84865 0.95897 0.96444 1.85932 1.34495 1.34867 1.69205 1.18307 0.99679 0.85986 0.89116 1.20462 0.98503 0.91182 0.98333 1.20791 1.02824 1.04361 0.88779 1.21138 0.99463 0.99531 0.91520 1.20978 1.04808 0.87230 0.93594 1.98393 1.96901 1.31840 1.76558 1.20878 1.02276 0.91284 0.99987 1.20765 1.01071 0.96007 0.94570 1.25298 0.91612 0.89842 1.11884 1.86695 1.35438 1.76223 1.36490 0.92552 0.76387 0.85086 0.75849 1.23328 0.90284 1.05808 0.95500 0.93802 0.91198 0.87134 0.87767 0.85917 0.90835 0.91542 0.89895 0.89924 0.90229 0.82552 0.85415 0.88777 0.77265 1.21889 1.18987 0.85920 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.33 113.37 1.17 1.15 16 2 O -0.34 0.74 8.35 -148.98 -1.24 -0.50 16 3 C 0.04 -0.13 0.85 -10.27 -0.01 -0.14 16 4 C 0.43 0.26 2.51 71.98 0.18 0.45 16 5 F -0.19 -0.27 15.37 44.97 0.69 0.42 16 6 F -0.19 -0.92 17.09 44.97 0.77 -0.15 16 7 F -0.18 -0.13 15.83 44.97 0.71 0.58 16 8 C -0.14 1.13 6.51 31.12 0.20 1.33 16 9 C -0.09 0.70 4.20 -10.27 -0.04 0.65 16 10 H 0.12 -1.14 8.14 -2.38 -0.02 -1.16 16 11 C 0.07 -0.39 5.42 71.98 0.39 0.00 16 12 O -0.33 0.63 8.05 -92.60 -0.75 -0.11 16 13 C 0.11 0.15 5.63 22.50 0.13 0.27 16 14 C -0.08 -0.06 5.89 -19.77 -0.12 -0.18 16 15 C -0.11 0.35 9.79 71.24 0.70 1.05 16 16 C -0.10 -0.17 9.48 22.28 0.21 0.04 16 17 C -0.04 -0.19 6.32 22.33 0.14 -0.05 16 18 Cl -0.07 -0.34 28.95 -2.72 -0.08 -0.42 16 19 C -0.13 -0.71 8.44 22.28 0.19 -0.52 16 20 C -0.12 -0.38 5.28 -19.77 -0.10 -0.48 16 21 C -0.08 0.00 2.33 71.23 0.17 0.17 16 22 O -0.54 -0.90 12.65 -148.98 -1.89 -2.79 16 23 Si 0.80 0.02 30.41 68.60 2.09 2.11 16 24 C -0.11 0.65 6.89 31.12 0.21 0.86 16 25 H 0.04 -0.12 6.59 -2.39 -0.02 -0.14 16 26 H 0.07 -0.57 6.60 -2.38 -0.02 -0.59 16 27 H 0.11 -0.80 8.14 -2.38 -0.02 -0.81 16 28 H 0.10 -1.05 6.64 -2.39 -0.02 -1.07 16 29 H 0.12 -1.21 8.06 -2.38 -0.02 -1.23 16 30 H 0.07 -0.27 6.12 -2.39 -0.01 -0.29 16 31 H 0.07 -0.44 7.10 -2.38 -0.02 -0.46 16 32 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.08 -0.40 8.09 -2.39 -0.02 -0.42 16 34 H 0.08 -0.23 7.53 -2.39 -0.02 -0.25 16 35 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 36 H 0.13 0.82 4.93 -2.91 -0.01 0.81 16 37 H 0.09 -0.41 6.56 -2.39 -0.02 -0.43 16 38 H 0.38 -0.86 8.61 -74.06 -0.64 -1.49 16 39 H -0.29 -2.04 6.81 99.48 0.68 -1.36 16 40 H -0.26 -0.70 7.11 99.48 0.71 0.01 16 41 H 0.12 -0.87 7.02 -2.38 -0.02 -0.89 16 42 H 0.09 -0.44 8.10 -2.39 -0.02 -0.46 16 Total: 0.00 -11.34 364.91 4.19 -7.16 By element: Atomic # 1 Polarization: -11.36 SS G_CDS: 0.46 Total: -10.89 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 3.42 Total: 4.60 kcal Atomic # 8 Polarization: 0.47 SS G_CDS: -3.87 Total: -3.40 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 2.17 Total: 0.85 kcal Atomic # 14 Polarization: 0.02 SS G_CDS: 2.09 Total: 2.11 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -11.34 4.19 -7.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8270650_17321602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.259 kcal (2) G-P(sol) polarization free energy of solvation -11.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds