Wall clock time and date at job start Mon Mar 8 2021 08:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.39115 * 120.06736 * 179.71903 * 3 2 1 5 5 O 1.36015 * 120.07633 * 0.02562 * 4 3 2 6 6 C 1.42898 * 116.99969 * 89.99408 * 5 4 3 7 7 C 1.52999 * 109.47066 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.47130 * 65.00093 * 7 6 5 9 9 Si 1.63096 * 113.99878 * 180.02562 * 8 7 6 10 10 C 1.86298 * 109.47052 * 299.99663 * 9 8 7 11 11 C 1.86299 * 109.47497 * 59.99674 * 9 8 7 12 12 C 1.86298 * 109.47052 * 179.97438 * 9 8 7 13 13 C 1.53002 * 109.47052 * 59.99948 * 12 9 8 14 14 C 1.53000 * 109.47598 * 179.97438 * 12 9 8 15 15 C 1.52997 * 109.47188 * 300.00100 * 12 9 8 16 16 C 1.38644 * 119.84951 * 179.70187 * 4 3 2 17 17 Br 1.89100 * 120.01255 * 180.30198 * 16 4 3 18 18 C 1.38312 * 119.97884 * 0.61825 * 16 4 3 19 19 C 1.50709 * 119.93308 * 179.67862 * 18 16 4 20 20 O 1.42896 * 109.47178 * 284.98263 * 19 18 16 21 21 Si 1.86296 * 109.47098 * 164.97886 * 19 18 16 22 22 H 1.48506 * 109.47101 * 60.00682 * 21 19 18 23 23 H 1.48502 * 109.46627 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47499 * 300.00242 * 21 19 18 25 25 C 1.38248 * 120.14145 * 359.66019 * 18 16 4 26 26 C 1.38238 * 120.14819 * 0.02562 * 25 18 16 27 27 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 30 30 H 1.08998 * 109.47298 * 299.99696 * 6 5 4 31 31 H 1.09005 * 109.47473 * 60.00365 * 6 5 4 32 32 H 1.09004 * 109.47776 * 184.99849 * 7 6 5 33 33 H 1.09003 * 109.47176 * 304.99964 * 7 6 5 34 34 H 1.08996 * 109.47682 * 60.00691 * 10 9 8 35 35 H 1.09002 * 109.47385 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.47566 * 300.00255 * 10 9 8 37 37 H 1.09005 * 109.47202 * 60.00177 * 11 9 8 38 38 H 1.08998 * 109.47332 * 179.97438 * 11 9 8 39 39 H 1.08994 * 109.47431 * 299.99779 * 11 9 8 40 40 H 1.08995 * 109.47522 * 59.99729 * 13 12 9 41 41 H 1.09003 * 109.47382 * 180.02562 * 13 12 9 42 42 H 1.09002 * 109.46815 * 299.99790 * 13 12 9 43 43 H 1.09001 * 109.46734 * 60.00019 * 14 12 9 44 44 H 1.08992 * 109.47568 * 179.97438 * 14 12 9 45 45 H 1.08995 * 109.47268 * 300.00542 * 14 12 9 46 46 H 1.08995 * 109.47705 * 59.99339 * 15 12 9 47 47 H 1.09002 * 109.47240 * 180.02562 * 15 12 9 48 48 H 1.09001 * 109.46781 * 299.99759 * 15 12 9 49 49 H 1.09002 * 109.46802 * 44.98174 * 19 18 16 50 50 H 0.96700 * 114.00081 * 299.99713 * 20 19 18 51 51 H 1.07997 * 119.93215 * 179.97438 * 25 18 16 52 52 H 1.08001 * 119.99197 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4356 1.2862 0.0059 5 8 4.1792 0.1473 0.0112 6 6 4.5393 -0.3982 -1.2595 7 6 5.3672 -1.6682 -1.0532 8 8 4.5590 -2.6674 -0.4282 9 14 5.3371 -4.0744 -0.1547 10 6 5.9304 -4.7807 -1.7733 11 6 6.7968 -3.7701 0.9622 12 6 4.1732 -5.2796 0.6599 13 6 2.9741 -5.5297 -0.2569 14 6 4.9028 -6.5998 0.9159 15 6 3.6864 -4.6992 1.9892 16 6 4.0603 2.5239 -0.0004 17 35 5.9483 2.6304 -0.0010 18 6 3.3022 3.6807 0.0004 19 6 3.9824 5.0256 0.0009 20 8 4.5086 5.2927 1.3023 21 14 2.7488 6.3456 -0.4532 22 1 1.6420 6.3505 0.5368 23 1 3.4190 7.6708 -0.4521 24 1 2.2020 6.0679 -1.8056 25 6 1.9218 3.6060 0.0004 26 6 1.2930 2.3749 0.0001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 3.6364 -0.6406 -1.8200 31 1 5.1268 0.3326 -1.8154 32 1 5.7167 -2.0351 -2.0183 33 1 6.2241 -1.4441 -0.4178 34 1 6.6116 -4.0756 -2.2496 35 1 6.4501 -5.7213 -1.5907 36 1 5.0764 -4.9588 -2.4269 37 1 6.4497 -3.3569 1.9093 38 1 7.3165 -4.7105 1.1453 39 1 7.4779 -3.0650 0.4860 40 1 3.3208 -5.9430 -1.2040 41 1 2.2929 -6.2344 0.2199 42 1 2.4541 -4.5892 -0.4396 43 1 5.7573 -6.4219 1.5689 44 1 4.2220 -7.3047 1.3929 45 1 5.2493 -7.0130 -0.0312 46 1 3.1665 -3.7589 1.8066 47 1 3.0058 -5.4046 2.4661 48 1 4.5407 -4.5211 2.6424 49 1 4.7949 5.0220 -0.7258 50 1 3.8401 5.3109 2.0008 51 1 1.3331 4.5115 0.0015 52 1 0.2145 2.3195 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8767664_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:46:55 Heat of formation + Delta-G solvation = -163.266700 kcal Electronic energy + Delta-G solvation = -31507.580142 eV Core-core repulsion = 27257.259401 eV Total energy + Delta-G solvation = -4250.320742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 420.097 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74125 -39.44457 -39.17908 -37.70062 -36.89883 -36.81485 -33.19256 -32.05320 -30.74657 -29.86548 -29.27998 -29.05755 -28.41549 -27.82897 -27.37578 -26.24887 -24.11756 -23.23820 -22.44416 -20.41161 -19.52631 -18.55343 -18.48437 -17.95327 -17.46690 -17.02756 -16.39193 -16.23815 -16.05813 -15.93347 -15.78985 -15.50403 -15.22251 -14.92706 -14.84264 -14.75840 -14.55903 -14.35533 -13.95869 -13.78008 -13.57907 -13.44640 -13.35505 -13.21539 -13.16773 -12.94830 -12.91995 -12.72104 -12.43265 -12.39761 -12.39322 -12.25416 -12.14413 -11.86118 -11.69367 -11.67314 -11.59567 -11.53104 -11.28259 -11.13936 -10.93018 -10.38804 -10.30177 -10.04157 -9.80296 -9.29394 -0.23716 -0.02088 0.51362 1.14890 1.45634 1.54278 1.56029 1.80139 1.93531 2.11394 2.14621 2.25001 2.49186 2.64431 3.49298 3.60325 3.79566 3.86006 4.01431 4.06630 4.09571 4.13194 4.13889 4.20081 4.30937 4.34715 4.37447 4.47438 4.49406 4.53783 4.66662 4.72991 4.74653 4.77858 4.79355 4.79888 4.82677 4.84026 4.85182 4.90338 5.00599 5.06702 5.09671 5.09999 5.20754 5.29819 5.33924 5.41398 5.44431 5.51771 5.59569 5.64452 6.06617 6.50439 6.74626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.112 3.888 4 C 0.070 3.930 5 O -0.321 6.321 6 C 0.061 3.939 7 C 0.081 3.919 8 O -0.633 6.633 9 Si 1.307 2.693 10 C -0.513 4.513 11 C -0.518 4.518 12 C -0.379 4.379 13 C -0.134 4.134 14 C -0.140 4.140 15 C -0.134 4.134 16 C -0.066 4.066 17 Br -0.025 7.025 18 C -0.124 4.124 19 C -0.088 4.088 20 O -0.542 6.542 21 Si 0.987 3.013 22 H -0.234 1.234 23 H -0.273 1.273 24 H -0.252 1.252 25 C -0.084 4.084 26 C -0.174 4.174 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.114 0.886 50 H 0.388 0.612 51 H 0.160 0.840 52 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 0.891 -2.764 5.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.065 3.935 4 C 0.023 3.977 5 O -0.238 6.238 6 C -0.014 4.014 7 C 0.006 3.994 8 O -0.593 6.593 9 Si 1.438 2.562 10 C -0.615 4.615 11 C -0.620 4.620 12 C -0.422 4.422 13 C -0.191 4.191 14 C -0.197 4.197 15 C -0.191 4.191 16 C -0.147 4.147 17 Br 0.061 6.939 18 C -0.127 4.127 19 C -0.198 4.198 20 O -0.349 6.349 21 Si 0.809 3.191 22 H -0.157 1.157 23 H -0.198 1.198 24 H -0.175 1.175 25 C -0.102 4.102 26 C -0.192 4.192 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.132 0.868 50 H 0.236 0.764 51 H 0.178 0.822 52 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.549 1.398 -3.118 4.927 hybrid contribution -0.396 -0.805 0.470 1.013 sum -3.946 0.593 -2.648 4.789 Atomic orbital electron populations 1.23444 0.76154 1.05715 1.02746 1.86237 1.23462 1.25577 1.87855 1.19476 0.91025 0.86197 0.96829 1.17868 0.87516 0.86069 1.06239 1.86169 1.69887 1.37629 1.30069 1.23068 0.99577 0.94447 0.84261 1.22250 0.91996 0.86441 0.98708 1.85404 1.55580 1.39620 1.78663 0.76366 0.59784 0.55328 0.64749 1.27024 1.06852 1.08165 1.19470 1.27128 1.17590 1.05199 1.12037 1.25861 1.06926 1.07425 1.02011 1.21513 0.97188 1.01404 0.99014 1.21596 1.00123 0.95862 1.02108 1.21501 1.00996 1.00362 0.96280 1.22046 0.91830 0.94149 1.06664 1.96728 1.01227 1.98677 1.97243 1.20250 0.93885 0.94942 1.03579 1.25231 1.06860 0.97750 0.89934 1.86559 1.38577 1.93463 1.16268 0.85178 0.76677 0.76088 0.81146 1.15732 1.19839 1.17541 1.21207 0.92773 0.98914 0.97346 1.21576 1.02026 0.90622 1.05010 0.91164 0.86919 0.90854 0.92040 0.90693 0.88227 0.91251 0.90773 0.90243 0.90870 0.91826 0.90336 0.91201 0.91876 0.93255 0.92800 0.92051 0.93026 0.91566 0.93061 0.93179 0.92560 0.86765 0.76357 0.82249 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.32 -1.61 10.28 -79.60 -0.82 -2.43 16 3 C 0.11 0.53 6.70 22.56 0.15 0.68 16 4 C 0.07 0.53 5.73 22.58 0.13 0.66 16 5 O -0.32 -2.97 9.14 -73.66 -0.67 -3.64 16 6 C 0.06 0.24 6.44 71.98 0.46 0.71 16 7 C 0.08 0.12 5.51 71.98 0.40 0.51 16 8 O -0.63 -2.69 8.52 -144.34 -1.23 -3.92 16 9 Si 1.31 0.09 8.45 68.60 0.58 0.67 16 10 C -0.51 0.73 8.50 113.37 0.96 1.69 16 11 C -0.52 -0.74 8.50 113.37 0.96 0.22 16 12 C -0.38 -0.61 0.53 -10.79 -0.01 -0.61 16 13 C -0.13 -0.24 7.84 71.98 0.56 0.32 16 14 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 15 C -0.13 -0.50 7.85 71.98 0.56 0.07 16 16 C -0.07 -0.39 6.23 22.38 0.14 -0.25 16 17 Br -0.02 -0.15 31.38 -20.37 -0.64 -0.79 16 18 C -0.12 -0.21 5.26 -19.84 -0.10 -0.31 16 19 C -0.09 0.01 2.02 71.24 0.14 0.16 16 20 O -0.54 -0.59 12.70 -148.98 -1.89 -2.49 16 21 Si 0.99 -3.13 25.49 68.60 1.75 -1.38 16 22 H -0.23 1.35 6.73 99.48 0.67 2.02 16 23 H -0.27 -0.23 7.11 99.48 0.71 0.47 16 24 H -0.25 0.63 7.11 99.48 0.71 1.33 16 25 C -0.08 0.15 8.65 22.27 0.19 0.34 16 26 C -0.17 0.20 9.04 22.35 0.20 0.40 16 27 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 28 H 0.11 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.07 -0.54 7.66 -2.38 -0.02 -0.56 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.10 8.10 -2.38 -0.02 0.08 16 32 H 0.10 -0.45 7.21 -2.39 -0.02 -0.46 16 33 H 0.07 0.03 7.21 -2.39 -0.02 0.02 16 34 H 0.07 -0.20 7.48 -2.39 -0.02 -0.22 16 35 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 36 H 0.07 -0.09 7.79 -2.39 -0.02 -0.10 16 37 H 0.06 0.23 7.79 -2.38 -0.02 0.21 16 38 H 0.08 0.00 7.79 -2.39 -0.02 -0.02 16 39 H 0.07 0.05 7.48 -2.39 -0.02 0.03 16 40 H 0.06 -0.01 7.80 -2.39 -0.02 -0.03 16 41 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.05 0.17 7.97 -2.39 -0.02 0.15 16 43 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 44 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.07 -0.13 7.79 -2.39 -0.02 -0.15 16 46 H 0.05 0.30 7.96 -2.39 -0.02 0.28 16 47 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 49 H 0.11 0.07 7.22 -2.39 -0.02 0.05 16 50 H 0.39 -2.26 8.70 -74.06 -0.64 -2.90 16 51 H 0.16 -1.10 4.87 -2.91 -0.01 -1.12 16 52 H 0.17 -1.24 6.30 -2.91 -0.02 -1.26 16 Total: 0.00 -15.23 432.22 4.50 -10.73 By element: Atomic # 1 Polarization: -3.94 SS G_CDS: 0.98 Total: -2.96 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 6.44 Total: 6.20 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -4.61 Total: -12.48 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.33 Total: -0.71 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.64 Total: -0.79 kcal Total: -15.23 4.50 -10.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8767664_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.532 kcal (2) G-P(sol) polarization free energy of solvation -15.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds