Wall clock time and date at job start Mon Mar 8 2021 08:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.39120 * 120.06857 * 179.97438 * 3 2 1 5 5 O 1.36019 * 120.07293 * 0.02864 * 4 3 2 6 6 C 1.42903 * 116.99694 * 89.99606 * 5 4 3 7 7 C 1.52997 * 109.46934 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47579 * 305.00208 * 7 6 5 9 9 C 1.53004 * 109.47059 * 64.99909 * 7 6 5 10 10 C 1.53001 * 109.47385 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46851 * 300.00387 * 10 9 7 12 12 H 1.08997 * 109.46972 * 299.99333 * 11 10 9 13 13 O 1.42901 * 109.47048 * 179.97438 * 11 10 9 14 14 C 1.52995 * 109.47477 * 60.00070 * 11 10 9 15 15 C 1.52999 * 109.47484 * 185.00069 * 7 6 5 16 16 C 1.38636 * 119.85068 * 180.02562 * 4 3 2 17 17 Br 1.89100 * 120.01113 * 180.02562 * 16 4 3 18 18 C 1.38312 * 119.98288 * 0.02562 * 16 4 3 19 19 C 1.50704 * 119.93365 * 180.02562 * 18 16 4 20 20 O 1.42898 * 109.46870 * 285.00131 * 19 18 16 21 21 Si 1.86303 * 109.47212 * 165.00136 * 19 18 16 22 22 C 1.38256 * 120.13874 * 359.97438 * 18 16 4 23 23 C 1.38242 * 120.14614 * 359.76633 * 22 18 16 24 24 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 25 25 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 27 27 H 1.08996 * 109.47545 * 299.99988 * 6 5 4 28 28 H 1.09007 * 109.47310 * 59.99984 * 6 5 4 29 29 H 1.09001 * 109.47385 * 300.00025 * 9 7 6 30 30 H 1.09006 * 109.46509 * 60.00245 * 9 7 6 31 31 H 1.08991 * 109.47366 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.46788 * 59.99833 * 10 9 7 33 33 H 0.96705 * 113.99905 * 59.99568 * 13 11 10 34 34 H 1.09001 * 109.47420 * 179.97438 * 14 11 10 35 35 H 1.09001 * 109.47450 * 59.99164 * 14 11 10 36 36 H 1.09003 * 109.46826 * 300.00601 * 15 7 6 37 37 H 1.09001 * 109.46678 * 60.00049 * 15 7 6 38 38 H 1.09001 * 109.46968 * 45.00266 * 19 18 16 39 39 H 0.96705 * 113.99911 * 179.97438 * 20 19 18 40 40 H 1.48505 * 109.99700 * 60.00117 * 21 19 18 41 41 H 1.48497 * 109.99897 * 181.31640 * 21 19 18 42 42 H 1.07997 * 119.92720 * 180.02562 * 22 18 16 43 43 H 1.08000 * 119.98985 * 180.27771 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4356 1.2862 0.0005 5 8 4.1793 0.1473 0.0005 6 6 4.5343 -0.3956 -1.2729 7 6 5.3640 -1.6653 -1.0725 8 1 6.2234 -1.4418 -0.4403 9 6 4.5024 -2.7370 -0.4016 10 6 5.3319 -4.0070 -0.2017 11 6 5.8164 -4.5185 -1.5599 12 1 4.9568 -4.7418 -2.1917 13 8 6.5917 -5.7044 -1.3732 14 6 6.6781 -3.4470 -2.2307 15 6 5.8491 -2.1772 -2.4303 16 6 4.0603 2.5238 0.0011 17 35 5.9483 2.6304 0.0011 18 6 3.3023 3.6807 0.0016 19 6 3.9825 5.0255 0.0016 20 8 4.5091 5.2928 1.3028 21 14 2.7486 6.3456 -0.4522 22 6 1.9217 3.6060 0.0011 23 6 1.2930 2.3749 -0.0049 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 3.6292 -0.6367 -1.8302 28 1 5.1196 0.3364 -1.8295 29 1 4.1569 -2.3723 0.5658 30 1 3.6430 -2.9605 -1.0338 31 1 4.7180 -4.7705 0.2758 32 1 6.1915 -3.7837 0.4301 33 1 6.1082 -6.4280 -0.9516 34 1 7.0236 -3.8116 -3.1981 35 1 7.5377 -3.2237 -1.5988 36 1 4.9897 -2.4006 -3.0624 37 1 6.4629 -1.4137 -2.9082 38 1 4.7946 5.0219 -0.7254 39 1 4.9623 6.1440 1.3765 40 1 1.6362 6.3608 0.5315 41 1 3.4142 7.6726 -0.4867 42 1 1.3331 4.5115 0.0011 43 1 0.2145 2.3195 -0.0098 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8767664_16737256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:16:34 Heat of formation + Delta-G solvation = -127.005651 kcal Electronic energy + Delta-G solvation = -26716.693203 eV Core-core repulsion = 22775.463058 eV Total energy + Delta-G solvation = -3941.230144 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.066 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78019 -40.27649 -39.28167 -38.89728 -37.28341 -36.61076 -33.24099 -32.37968 -31.81028 -31.28017 -30.20906 -28.45787 -26.43637 -26.23372 -23.84701 -23.46693 -22.45523 -22.16410 -20.85462 -19.39933 -18.60645 -18.34100 -18.19575 -18.13147 -17.06507 -16.58310 -16.36666 -16.29463 -15.70143 -15.59389 -15.46636 -15.36752 -14.97635 -14.58616 -14.26468 -13.99220 -13.96347 -13.79463 -13.61032 -13.20784 -13.15079 -13.03905 -12.64380 -12.47023 -12.45863 -12.23325 -12.10176 -11.84062 -11.66777 -11.63316 -11.60137 -11.26924 -11.14924 -10.90865 -10.69476 -10.44807 -9.82819 -9.32166 -4.93283 -0.24686 -0.04795 0.47638 1.25335 1.59647 1.90946 2.08379 2.21685 2.55318 3.23986 3.33009 3.65708 3.67501 3.72036 3.77089 3.83939 3.89857 4.03851 4.10635 4.11448 4.24846 4.29550 4.33295 4.36761 4.38880 4.39936 4.42553 4.49547 4.55924 4.64664 4.73009 4.80321 4.85096 4.90709 4.99159 5.06398 5.08001 5.10863 5.15837 5.19940 5.27169 5.36221 5.45352 6.02835 6.46308 6.58309 6.86072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.115 3.885 4 C 0.071 3.929 5 O -0.326 6.326 6 C 0.073 3.927 7 C -0.080 4.080 8 H 0.069 0.931 9 C -0.101 4.101 10 C -0.146 4.146 11 C 0.103 3.897 12 H 0.065 0.935 13 O -0.590 6.590 14 C -0.112 4.112 15 C -0.102 4.102 16 C -0.070 4.070 17 Br -0.027 7.027 18 C -0.083 4.083 19 C -0.094 4.094 20 O -0.548 6.548 21 Si 0.776 3.224 22 C -0.077 4.077 23 C -0.172 4.172 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.393 0.607 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.394 0.606 40 H -0.280 1.280 41 H -0.285 1.285 42 H 0.161 0.839 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 1.450 -4.515 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.067 3.933 4 C 0.024 3.976 5 O -0.243 6.243 6 C -0.001 4.001 7 C -0.099 4.099 8 H 0.088 0.912 9 C -0.139 4.139 10 C -0.184 4.184 11 C 0.044 3.956 12 H 0.083 0.917 13 O -0.398 6.398 14 C -0.150 4.150 15 C -0.140 4.140 16 C -0.150 4.150 17 Br 0.059 6.941 18 C -0.086 4.086 19 C -0.202 4.202 20 O -0.358 6.358 21 Si 0.679 3.321 22 C -0.095 4.095 23 C -0.191 4.191 24 H 0.086 0.914 25 H 0.134 0.866 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.244 0.756 40 H -0.207 1.207 41 H -0.211 1.211 42 H 0.178 0.822 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.652 1.677 -4.286 7.289 hybrid contribution 0.091 0.141 1.276 1.287 sum -5.560 1.818 -3.009 6.579 Atomic orbital electron populations 1.23475 0.75908 1.05909 1.02849 1.86173 1.23665 1.25440 1.87949 1.19388 0.90779 0.86255 0.96871 1.17761 0.87482 0.85866 1.06474 1.86100 1.70038 1.37681 1.30505 1.22879 0.98638 0.95043 0.83494 1.21133 0.97946 0.92797 0.98021 0.91225 1.21390 0.97759 0.93729 1.00982 1.22222 1.00145 0.98271 0.97776 1.21890 0.93385 0.84951 0.95331 0.91729 1.86480 1.43976 1.25140 1.84245 1.21443 0.98368 0.94062 1.01088 1.21412 1.00375 0.96600 0.95584 1.22064 0.91748 0.94354 1.06873 1.96702 1.01408 1.98687 1.97279 1.19254 0.93632 0.92714 1.02954 1.25153 1.05664 1.00848 0.88503 1.86583 1.76411 1.43186 1.29632 0.94046 0.76694 0.73857 0.87505 1.21190 0.92583 0.99032 0.96683 1.21578 1.02151 0.90418 1.04942 0.91448 0.86554 0.90544 0.92206 0.92545 0.92266 0.91151 0.90709 0.92416 0.75750 0.90955 0.92244 0.90297 0.90248 0.89666 0.75621 1.20733 1.21148 0.82174 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.32 -0.91 10.28 -79.60 -0.82 -1.73 16 3 C 0.11 0.46 6.70 22.56 0.15 0.61 16 4 C 0.07 0.53 5.73 22.58 0.13 0.66 16 5 O -0.33 -2.72 8.71 -79.88 -0.70 -3.41 16 6 C 0.07 0.25 5.44 71.98 0.39 0.64 16 7 C -0.08 -0.15 2.43 -10.79 -0.03 -0.18 16 8 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 9 C -0.10 -0.18 5.10 30.60 0.16 -0.03 16 10 C -0.15 -0.16 5.55 30.60 0.17 0.01 16 11 C 0.10 0.14 3.47 30.59 0.11 0.24 16 12 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 13 O -0.59 -2.18 13.32 -148.98 -1.98 -4.16 16 14 C -0.11 -0.18 5.57 30.58 0.17 -0.01 16 15 C -0.10 0.10 5.20 30.58 0.16 0.25 16 16 C -0.07 -0.48 6.23 22.38 0.14 -0.35 16 17 Br -0.03 -0.19 31.42 -20.37 -0.64 -0.83 16 18 C -0.08 -0.29 5.30 -19.84 -0.11 -0.40 16 19 C -0.09 -0.06 2.01 71.24 0.14 0.08 16 20 O -0.55 -1.83 12.67 -148.98 -1.89 -3.72 16 21 Si 0.78 -2.71 30.19 68.60 2.07 -0.64 16 22 C -0.08 0.02 8.65 22.27 0.19 0.21 16 23 C -0.17 0.18 9.04 22.35 0.20 0.38 16 24 H 0.07 -0.51 7.67 -2.39 -0.02 -0.53 16 25 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H 0.08 -0.72 7.65 -2.38 -0.02 -0.74 16 27 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.06 0.32 7.82 -2.39 -0.02 0.30 16 30 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.39 -1.67 9.08 -74.05 -0.67 -2.34 16 34 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.09 -0.08 7.22 -2.39 -0.02 -0.09 16 39 H 0.39 -1.74 8.74 -74.05 -0.65 -2.39 16 40 H -0.28 -0.32 6.75 99.48 0.67 0.35 16 41 H -0.28 -0.27 7.11 99.48 0.71 0.44 16 42 H 0.16 -0.76 4.88 -2.91 -0.01 -0.77 16 43 H 0.17 -1.33 6.30 -2.91 -0.02 -1.34 16 Total: 0.00 -17.79 363.73 -1.14 -18.94 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -0.28 Total: -7.60 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 3.09 Total: 3.16 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -5.39 Total: -13.03 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.07 Total: -0.64 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.64 Total: -0.83 kcal Total: -17.79 -1.14 -18.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8767664_16737256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.069 kcal (2) G-P(sol) polarization free energy of solvation -17.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds