Wall clock time and date at job start Mon Mar 8 2021 09:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.39124 * 120.06505 * 179.72857 * 3 2 1 5 5 O 1.36006 * 120.07698 * 359.97438 * 4 3 2 6 6 C 1.42901 * 117.00334 * 90.00075 * 5 4 3 7 7 C 1.52999 * 109.47491 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47249 * 180.02562 * 7 6 5 9 9 O 1.42894 * 109.47106 * 179.97438 * 8 7 6 10 10 Si 1.63104 * 114.00253 * 179.97438 * 9 8 7 11 11 C 1.86297 * 109.46930 * 300.00282 * 10 9 8 12 12 C 1.86299 * 109.46721 * 60.00075 * 10 9 8 13 13 C 1.86293 * 109.47333 * 179.97438 * 10 9 8 14 14 C 1.53001 * 109.47191 * 59.99998 * 13 10 9 15 15 C 1.52997 * 109.47319 * 179.97438 * 13 10 9 16 16 C 1.53003 * 109.47258 * 300.00248 * 13 10 9 17 17 C 1.38646 * 119.84510 * 179.69707 * 4 3 2 18 18 Br 1.89102 * 120.00815 * 180.29267 * 17 4 3 19 19 C 1.38315 * 119.98503 * 0.61909 * 17 4 3 20 20 C 1.50701 * 119.93527 * 179.67678 * 19 17 4 21 21 O 1.42896 * 109.46904 * 284.97826 * 20 19 17 22 22 Si 1.86302 * 109.47255 * 164.97591 * 20 19 17 23 23 H 1.48497 * 109.46748 * 180.02562 * 22 20 19 24 24 H 1.48500 * 109.47081 * 300.00046 * 22 20 19 25 25 H 1.48500 * 109.46622 * 59.99945 * 22 20 19 26 26 C 1.38255 * 120.13641 * 359.65397 * 19 17 4 27 27 C 1.38245 * 120.14920 * 0.02562 * 26 19 17 28 28 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 29 29 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46861 * 300.00042 * 6 5 4 32 32 H 1.09001 * 109.47084 * 59.99593 * 6 5 4 33 33 H 1.09001 * 109.47080 * 300.00058 * 7 6 5 34 34 H 1.08996 * 109.46776 * 59.99648 * 7 6 5 35 35 H 1.09001 * 109.47117 * 300.00024 * 8 7 6 36 36 H 1.08995 * 109.47054 * 59.99863 * 8 7 6 37 37 H 1.08999 * 109.47256 * 59.99878 * 11 10 9 38 38 H 1.08998 * 109.46977 * 179.97438 * 11 10 9 39 39 H 1.09000 * 109.46834 * 299.99572 * 11 10 9 40 40 H 1.08994 * 109.47504 * 59.99987 * 12 10 9 41 41 H 1.09003 * 109.46957 * 180.02562 * 12 10 9 42 42 H 1.08999 * 109.47324 * 300.00037 * 12 10 9 43 43 H 1.09008 * 109.47012 * 60.00055 * 14 13 10 44 44 H 1.08999 * 109.47448 * 179.97438 * 14 13 10 45 45 H 1.08998 * 109.47448 * 300.00424 * 14 13 10 46 46 H 1.09000 * 109.47010 * 59.99863 * 15 13 10 47 47 H 1.08999 * 109.47237 * 180.02562 * 15 13 10 48 48 H 1.09000 * 109.47276 * 300.00387 * 15 13 10 49 49 H 1.08998 * 109.46749 * 59.99963 * 16 13 10 50 50 H 1.08999 * 109.47084 * 179.97438 * 16 13 10 51 51 H 1.09000 * 109.46785 * 299.99962 * 16 13 10 52 52 H 1.09000 * 109.46984 * 44.97809 * 20 19 17 53 53 H 0.96703 * 113.99978 * 179.97438 * 21 20 19 54 54 H 1.07991 * 119.92771 * 180.02562 * 26 19 17 55 55 H 1.08004 * 119.98876 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4356 1.2863 0.0057 5 8 4.1792 0.1475 0.0118 6 6 4.5394 -0.3990 -1.2585 7 6 5.3673 -1.6688 -1.0512 8 6 5.7535 -2.2536 -2.4113 9 8 6.5272 -3.4392 -2.2177 10 14 6.9996 -4.1570 -3.6040 11 6 5.4984 -4.6364 -4.5978 12 6 8.0457 -2.9729 -4.5911 13 6 7.9947 -5.6809 -3.2066 14 6 7.1361 -6.6535 -2.3956 15 6 8.4372 -6.3546 -4.5071 16 6 9.2275 -5.2867 -2.3907 17 6 4.0602 2.5240 -0.0007 18 35 5.9482 2.6306 -0.0013 19 6 3.3021 3.6809 0.0003 20 6 3.9822 5.0257 0.0007 21 8 4.5085 5.2929 1.3021 22 14 2.7485 6.3458 -0.4534 23 1 3.4189 7.6708 -0.4536 24 1 2.2017 6.0681 -1.8058 25 1 1.6418 6.3504 0.5367 26 6 1.9216 3.6061 0.0003 27 6 1.2929 2.3749 0.0000 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.6364 -0.6419 -1.8187 32 1 5.1268 0.3314 -1.8149 33 1 6.2703 -1.4264 -0.4908 34 1 4.7796 -2.3990 -0.4949 35 1 4.8508 -2.4960 -2.9721 36 1 6.3414 -1.5232 -2.9671 37 1 4.9166 -3.7445 -4.8303 38 1 5.8141 -5.1156 -5.5244 39 1 4.8864 -5.3291 -4.0201 40 1 8.9239 -2.6924 -4.0097 41 1 8.3609 -3.4525 -5.5179 42 1 7.4638 -2.0810 -4.8237 43 1 6.2578 -6.9345 -2.9768 44 1 7.7181 -7.5454 -2.1634 45 1 6.8204 -6.1739 -1.4691 46 1 9.0487 -5.6619 -5.0853 47 1 9.0190 -7.2465 -4.2746 48 1 7.5587 -6.6355 -5.0880 49 1 8.9118 -4.8070 -1.4643 50 1 9.8095 -6.1784 -2.1578 51 1 9.8391 -4.5937 -2.9685 52 1 4.7946 5.0222 -0.7261 53 1 4.9615 6.1440 1.3760 54 1 1.3330 4.5115 0.0006 55 1 0.2143 2.3195 -0.0004 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8767664_18527726.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:10:39 Heat of formation + Delta-G solvation = -169.314191 kcal Electronic energy + Delta-G solvation = -32495.148668 eV Core-core repulsion = 28089.028068 eV Total energy + Delta-G solvation = -4406.120600 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.77310 -39.46742 -39.09056 -38.12360 -37.08233 -36.82720 -33.68601 -33.13474 -31.60183 -30.29098 -29.37628 -29.06220 -28.47574 -27.83623 -27.37920 -26.46316 -26.21545 -23.53406 -22.63028 -22.35844 -20.41620 -19.44780 -18.60327 -18.33457 -18.25046 -17.73365 -16.99025 -16.87533 -16.38144 -15.99246 -15.94512 -15.73308 -15.60216 -15.26580 -15.13330 -14.95396 -14.83432 -14.71325 -14.50238 -13.98137 -13.94398 -13.73845 -13.61142 -13.38641 -13.27184 -13.17762 -12.96176 -12.95183 -12.90056 -12.82891 -12.58188 -12.49561 -12.38896 -12.33862 -12.17549 -12.08299 -11.76274 -11.70413 -11.69226 -11.64164 -11.41362 -11.30038 -11.24109 -10.92789 -10.31018 -10.27584 -10.05438 -9.83302 -9.33369 -0.27206 -0.06182 0.47731 1.12993 1.46103 1.47742 1.53248 1.78936 1.89633 2.08008 2.12820 2.20447 2.42044 2.65250 3.38645 3.68551 3.78361 3.87240 3.93400 4.03972 4.05381 4.08225 4.12888 4.13112 4.21648 4.31285 4.35749 4.37205 4.40910 4.44276 4.47236 4.52317 4.71622 4.74327 4.75579 4.78180 4.79408 4.79480 4.82958 4.83173 4.87095 5.00347 5.04407 5.08870 5.09525 5.09739 5.09910 5.21811 5.26295 5.34850 5.41021 5.45180 5.55051 5.60560 5.64346 6.00781 6.43887 6.83240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.321 6.321 3 C 0.113 3.887 4 C 0.071 3.929 5 O -0.328 6.328 6 C 0.065 3.935 7 C -0.116 4.116 8 C 0.084 3.916 9 O -0.640 6.640 10 Si 1.310 2.690 11 C -0.516 4.516 12 C -0.517 4.517 13 C -0.383 4.383 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.137 4.137 17 C -0.067 4.067 18 Br -0.021 7.021 19 C -0.086 4.086 20 C -0.092 4.092 21 O -0.553 6.553 22 Si 0.982 3.018 23 H -0.253 1.253 24 H -0.251 1.251 25 H -0.254 1.254 26 C -0.085 4.085 27 C -0.172 4.172 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.048 0.952 51 H 0.060 0.940 52 H 0.085 0.915 53 H 0.397 0.603 54 H 0.156 0.844 55 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 3.130 -4.289 6.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.234 6.234 3 C 0.066 3.934 4 C 0.024 3.976 5 O -0.245 6.245 6 C -0.009 4.009 7 C -0.153 4.153 8 C 0.008 3.992 9 O -0.600 6.600 10 Si 1.441 2.559 11 C -0.618 4.618 12 C -0.619 4.619 13 C -0.425 4.425 14 C -0.194 4.194 15 C -0.197 4.197 16 C -0.194 4.194 17 C -0.148 4.148 18 Br 0.065 6.935 19 C -0.088 4.088 20 C -0.201 4.201 21 O -0.362 6.362 22 Si 0.804 3.196 23 H -0.176 1.176 24 H -0.175 1.175 25 H -0.178 1.178 26 C -0.104 4.104 27 C -0.191 4.191 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.079 0.921 52 H 0.103 0.897 53 H 0.247 0.753 54 H 0.174 0.826 55 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.405 2.884 -3.952 6.584 hybrid contribution 0.221 -0.062 -0.322 0.395 sum -4.185 2.822 -4.274 6.614 Atomic orbital electron populations 1.23480 0.75862 1.05946 1.02858 1.86177 1.23740 1.25481 1.87985 1.19396 0.90838 0.86206 0.96987 1.17769 0.87394 0.85821 1.06618 1.86089 1.70055 1.37890 1.30483 1.22736 0.98922 0.95301 0.83910 1.21429 1.00404 0.95104 0.98386 1.21949 0.95194 0.85766 0.96249 1.85317 1.70801 1.42722 1.61147 0.76298 0.63934 0.62535 0.53143 1.27062 1.17600 1.06202 1.10900 1.27081 1.11216 1.12724 1.10845 1.25911 1.04321 1.13207 0.99069 1.21542 0.99379 0.98737 0.99757 1.21597 1.01616 1.00614 0.95881 1.21541 0.96967 1.01197 0.99724 1.22054 0.92042 0.94147 1.06550 1.96706 1.00862 1.98678 1.97246 1.19331 0.93505 0.93232 1.02771 1.24941 1.05433 0.99898 0.89840 1.86499 1.77421 1.44099 1.28206 0.85250 0.77854 0.76413 0.80100 1.17647 1.17472 1.17788 1.21204 0.92865 0.99037 0.97244 1.21564 1.02137 0.90436 1.04914 0.90683 0.91263 0.86524 0.91782 0.91926 0.90737 0.90667 0.90934 0.91062 0.90922 0.90219 0.91156 0.91262 0.90228 0.90947 0.91995 0.93292 0.92737 0.91769 0.93121 0.91708 0.92755 0.93282 0.92069 0.89671 0.75274 0.82634 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.32 -1.29 10.28 -79.62 -0.82 -2.10 16 3 C 0.11 0.55 6.70 22.57 0.15 0.71 16 4 C 0.07 0.57 5.73 22.58 0.13 0.70 16 5 O -0.33 -3.04 9.18 -79.74 -0.73 -3.77 16 6 C 0.07 0.24 6.06 71.98 0.44 0.67 16 7 C -0.12 -0.35 5.95 30.59 0.18 -0.17 16 8 C 0.08 -0.01 5.12 71.98 0.37 0.36 16 9 O -0.64 -1.50 8.56 -148.98 -1.28 -2.77 16 10 Si 1.31 -1.70 8.45 68.60 0.58 -1.12 16 11 C -0.52 0.80 8.50 113.37 0.96 1.77 16 12 C -0.52 0.64 8.50 113.37 0.96 1.60 16 13 C -0.38 -0.25 0.53 -10.79 -0.01 -0.25 16 14 C -0.14 -0.24 7.84 71.98 0.56 0.33 16 15 C -0.14 0.09 7.85 71.98 0.56 0.66 16 16 C -0.14 -0.27 7.85 71.98 0.56 0.30 16 17 C -0.07 -0.48 6.23 22.39 0.14 -0.34 16 18 Br -0.02 -0.14 31.39 -20.37 -0.64 -0.78 16 19 C -0.09 -0.33 5.30 -19.84 -0.11 -0.44 16 20 C -0.09 0.01 2.01 71.24 0.14 0.15 16 21 O -0.55 -0.52 12.67 -148.98 -1.89 -2.40 16 22 Si 0.98 -3.09 25.49 68.60 1.75 -1.34 16 23 H -0.25 0.77 7.11 99.48 0.71 1.48 16 24 H -0.25 0.64 7.11 99.48 0.71 1.34 16 25 H -0.25 0.49 6.73 99.48 0.67 1.16 16 26 C -0.09 -0.06 8.65 22.28 0.19 0.13 16 27 C -0.17 0.00 9.04 22.35 0.20 0.21 16 28 H 0.07 -0.63 7.66 -2.39 -0.02 -0.64 16 29 H 0.07 -0.48 7.66 -2.39 -0.02 -0.50 16 30 H 0.12 -0.88 8.14 -2.38 -0.02 -0.90 16 31 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.06 0.13 8.10 -2.39 -0.02 0.11 16 33 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 -0.25 7.21 -2.39 -0.02 -0.27 16 36 H 0.07 -0.23 7.21 -2.39 -0.02 -0.25 16 37 H 0.07 -0.19 7.48 -2.39 -0.02 -0.21 16 38 H 0.08 -0.20 7.79 -2.39 -0.02 -0.22 16 39 H 0.07 -0.05 7.79 -2.39 -0.02 -0.07 16 40 H 0.07 -0.01 7.79 -2.39 -0.02 -0.03 16 41 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 42 H 0.07 -0.16 7.48 -2.39 -0.02 -0.18 16 43 H 0.06 0.00 7.80 -2.38 -0.02 -0.02 16 44 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 46 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 47 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 49 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 50 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.06 0.02 7.79 -2.39 -0.02 0.00 16 52 H 0.09 -0.15 7.22 -2.39 -0.02 -0.17 16 53 H 0.40 -3.15 8.74 -74.06 -0.65 -3.80 16 54 H 0.16 -0.57 4.87 -2.92 -0.01 -0.59 16 55 H 0.17 -1.15 6.30 -2.91 -0.02 -1.17 16 Total: 0.00 -15.50 453.82 4.48 -11.02 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: 0.94 Total: -4.17 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.57 Total: 7.43 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -4.71 Total: -11.05 kcal Atomic # 14 Polarization: -4.79 SS G_CDS: 2.33 Total: -2.46 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.64 Total: -0.78 kcal Total: -15.50 4.48 -11.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8767664_18527726.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.291 kcal (2) G-P(sol) polarization free energy of solvation -15.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds