Wall clock time and date at job start Mon Mar 8 2021 09:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.38546 * 120.06730 * 359.97438 * 3 2 1 5 5 C 1.38283 * 120.01449 * 179.97438 * 4 3 2 6 6 C 1.38211 * 120.14770 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.92494 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47178 * 105.00076 * 7 6 5 9 9 Si 1.86300 * 109.47152 * 344.99998 * 7 6 5 10 10 H 1.48498 * 109.47280 * 60.00265 * 9 7 6 11 11 H 1.48498 * 109.46944 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46984 * 299.99984 * 9 7 6 13 13 C 1.38352 * 120.13946 * 0.02562 * 6 5 4 14 14 Br 1.89108 * 120.00633 * 179.97438 * 13 6 5 15 15 C 1.38602 * 119.98354 * 359.65585 * 13 6 5 16 16 O 1.36016 * 120.07345 * 180.32430 * 15 13 6 17 17 C 1.42897 * 116.99631 * 270.29156 * 16 15 13 18 18 C 1.50701 * 109.46652 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.00104 * 269.72675 * 18 17 16 20 20 C 1.38242 * 120.00197 * 179.77149 * 19 18 17 21 21 C 1.38237 * 119.99526 * 0.50469 * 20 19 18 22 22 Si 1.86797 * 119.99509 * 179.72966 * 21 20 19 23 23 C 1.86302 * 109.46889 * 270.01758 * 22 21 20 24 24 C 1.86291 * 109.47485 * 30.02208 * 22 21 20 25 25 C 1.86307 * 109.47117 * 150.02319 * 22 21 20 26 26 C 1.38232 * 120.00085 * 359.74943 * 21 20 19 27 27 C 1.38236 * 120.00360 * 0.02562 * 26 21 20 28 28 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 31 31 H 1.07995 * 119.99442 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.92410 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46802 * 224.99987 * 7 6 5 34 34 H 0.96700 * 114.00081 * 299.99713 * 8 7 6 35 35 H 1.08998 * 109.47485 * 300.00244 * 17 16 15 36 36 H 1.09005 * 109.47073 * 60.00782 * 17 16 15 37 37 H 1.08002 * 120.00242 * 0.02562 * 19 18 17 38 38 H 1.07998 * 120.00052 * 180.23195 * 20 19 18 39 39 H 1.09004 * 109.46794 * 60.00323 * 23 22 21 40 40 H 1.09000 * 109.47053 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.47560 * 300.00319 * 23 22 21 42 42 H 1.08993 * 109.47358 * 60.00136 * 24 22 21 43 43 H 1.09000 * 109.47101 * 179.97438 * 24 22 21 44 44 H 1.09006 * 109.47293 * 299.99459 * 24 22 21 45 45 H 1.08999 * 109.46644 * 59.99683 * 25 22 21 46 46 H 1.08996 * 109.46887 * 179.97438 * 25 22 21 47 47 H 1.09001 * 109.46492 * 300.00079 * 25 22 21 48 48 H 1.07996 * 119.99824 * 179.97438 * 26 21 20 49 49 H 1.07999 * 120.00298 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3745 -0.0005 5 6 1.9221 3.6061 0.0000 6 6 3.3022 3.6807 0.0005 7 6 3.9824 5.0256 0.0005 8 8 4.5081 5.2935 1.3020 9 14 2.7489 6.3454 -0.4548 10 1 1.6417 6.3508 0.5347 11 1 3.4194 7.6704 -0.4554 12 1 2.2027 6.0669 -1.8073 13 6 4.0605 2.5235 0.0000 14 35 5.9486 2.6300 0.0000 15 6 3.4360 1.2862 0.0061 16 8 4.1797 0.1473 0.0123 17 6 4.5402 -0.3988 -1.2580 18 6 5.3557 -1.6496 -1.0538 19 6 6.7327 -1.5697 -0.9624 20 6 7.4803 -2.7165 -0.7703 21 6 6.8517 -3.9444 -0.6801 22 14 7.8626 -5.4948 -0.4281 23 6 8.3322 -6.2060 -2.0848 24 6 9.4057 -5.0813 0.5302 25 6 6.8579 -6.7437 0.5215 26 6 5.4751 -4.0248 -0.7767 27 6 4.7271 -2.8775 -0.9641 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 0.2147 2.3192 -0.0005 32 1 1.3335 4.5116 0.0000 33 1 4.7952 5.0216 -0.7258 34 1 3.8392 5.3121 2.0002 35 1 3.6376 -0.6415 -1.8187 36 1 5.1280 0.3317 -1.8140 37 1 7.2241 -0.6109 -1.0370 38 1 8.5559 -2.6537 -0.6952 39 1 8.9200 -5.4753 -2.6404 40 1 8.9217 -7.1110 -1.9378 41 1 7.4293 -6.4480 -2.6455 42 1 9.1309 -4.6652 1.4994 43 1 9.9953 -5.9861 0.6775 44 1 9.9936 -4.3506 -0.0255 45 1 5.9550 -6.9857 -0.0392 46 1 7.4476 -7.6486 0.6681 47 1 6.5831 -6.3276 1.4907 48 1 4.9840 -4.9841 -0.7066 49 1 3.6516 -2.9404 -1.0400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_8767664_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:29:37 Heat of formation + Delta-G solvation = -89.149988 kcal Electronic energy + Delta-G solvation = -29875.902958 eV Core-core repulsion = 25745.649026 eV Total energy + Delta-G solvation = -4130.253932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 424.066 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78850 -40.13026 -39.33893 -38.75837 -37.00829 -33.31888 -32.92652 -31.76764 -31.48037 -30.23995 -29.52191 -28.61283 -28.39703 -28.37510 -26.94603 -26.32000 -23.57258 -23.35648 -22.52045 -21.98229 -19.53895 -18.57669 -18.38453 -17.80265 -17.58658 -16.91158 -16.38816 -16.27252 -16.14016 -15.94765 -15.69799 -15.38429 -15.10373 -14.95642 -14.39986 -14.23236 -14.18479 -14.07865 -13.96928 -13.90006 -13.78481 -13.59451 -13.34619 -13.28946 -13.21415 -13.19157 -13.06059 -12.70175 -12.53095 -12.39656 -12.29190 -12.21760 -11.90553 -11.73136 -11.59865 -11.11060 -11.00199 -10.86635 -10.85655 -10.73748 -10.44474 -9.85735 -9.66132 -9.56384 -9.26379 -0.27546 -0.05387 0.36916 0.58965 0.66491 1.05213 1.32785 1.44832 1.76790 1.83786 1.89764 1.95543 2.10517 2.17095 2.59054 2.65636 3.15109 3.41503 3.49057 3.70621 3.76918 3.93694 3.95967 3.98639 4.07235 4.10229 4.19289 4.27513 4.37211 4.43355 4.46516 4.52327 4.62422 4.73410 4.74328 4.76315 4.78599 4.79185 4.80033 4.80525 4.83388 4.86917 5.02968 5.12733 5.20595 5.27454 5.46699 5.54587 5.55491 5.57439 5.71764 5.77341 5.96347 6.23016 6.48598 6.54188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.300 6.300 3 C 0.125 3.875 4 C -0.179 4.179 5 C -0.086 4.086 6 C -0.120 4.120 7 C -0.082 4.082 8 O -0.525 6.525 9 Si 0.949 3.051 10 H -0.250 1.250 11 H -0.248 1.248 12 H -0.247 1.247 13 C -0.051 4.051 14 Br -0.012 7.012 15 C 0.091 3.909 16 O -0.305 6.305 17 C 0.106 3.894 18 C -0.081 4.081 19 C -0.104 4.104 20 C -0.093 4.093 21 C -0.362 4.362 22 Si 1.059 2.941 23 C -0.449 4.449 24 C -0.449 4.449 25 C -0.449 4.449 26 C -0.093 4.093 27 C -0.105 4.105 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.375 0.625 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.121 0.879 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -0.448 -1.567 4.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.213 6.213 3 C 0.077 3.923 4 C -0.198 4.198 5 C -0.105 4.105 6 C -0.123 4.123 7 C -0.193 4.193 8 O -0.330 6.330 9 Si 0.771 3.229 10 H -0.174 1.174 11 H -0.172 1.172 12 H -0.171 1.171 13 C -0.131 4.131 14 Br 0.075 6.925 15 C 0.044 3.956 16 O -0.222 6.222 17 C 0.033 3.967 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.404 4.404 22 Si 1.250 2.750 23 C -0.556 4.556 24 C -0.557 4.557 25 C -0.557 4.557 26 C -0.111 4.111 27 C -0.123 4.123 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.221 0.779 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.139 0.861 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.020 0.004 -1.995 3.620 hybrid contribution -1.191 -0.062 0.247 1.218 sum -4.211 -0.058 -1.748 4.560 Atomic orbital electron populations 1.23207 0.77724 1.04729 1.01636 1.86208 1.21708 1.25429 1.87913 1.19289 0.91038 0.85407 0.96561 1.21253 1.00774 0.91350 1.06455 1.20949 0.93189 0.98077 0.98239 1.20072 0.93287 0.95133 1.03809 1.25058 1.06495 0.97520 0.90216 1.86598 1.37338 1.93455 1.15600 0.85716 0.77355 0.78558 0.81276 1.17374 1.17167 1.17067 1.21951 0.92355 0.93615 1.05220 1.96777 1.00004 1.98650 1.97081 1.17591 0.86674 0.86031 1.05267 1.86250 1.69606 1.37334 1.28980 1.21611 0.97819 0.92910 0.84398 1.19434 0.93617 0.93236 1.01829 1.21141 0.93290 0.98786 0.99015 1.21059 0.99655 0.92342 0.98012 1.27424 1.00975 1.10119 1.01894 0.78192 0.65783 0.63690 0.67309 1.26121 1.05522 1.06708 1.17247 1.26133 1.15324 1.05347 1.08921 1.26131 1.09155 1.11578 1.08834 1.21049 0.94066 0.97901 0.98082 1.21140 0.99786 0.92265 0.99091 0.92192 0.87614 0.92281 0.83877 0.84476 0.86105 0.77856 0.91857 0.91812 0.86220 0.86038 0.91174 0.91072 0.91191 0.91024 0.91003 0.91174 0.91197 0.91002 0.91030 0.86064 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.30 -0.53 10.28 -34.22 -0.35 -0.88 16 3 C 0.12 0.25 6.70 -39.13 -0.26 -0.01 16 4 C -0.18 0.04 9.04 -39.45 -0.36 -0.32 16 5 C -0.09 0.03 8.65 -39.57 -0.34 -0.31 16 6 C -0.12 -0.11 5.26 -104.59 -0.55 -0.66 16 7 C -0.08 0.00 2.02 36.01 0.07 0.07 16 8 O -0.53 -0.27 12.70 -35.23 -0.45 -0.72 16 9 Si 0.95 -1.03 25.49 -169.99 -4.33 -5.36 16 10 H -0.25 0.41 6.73 56.52 0.38 0.79 16 11 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 12 H -0.25 0.15 7.11 56.52 0.40 0.55 16 13 C -0.05 -0.14 6.23 -39.41 -0.25 -0.38 16 14 Br -0.01 -0.03 31.38 -68.01 -2.13 -2.17 16 15 C 0.09 0.31 5.73 -39.11 -0.22 0.08 16 16 O -0.30 -1.32 9.16 -34.29 -0.31 -1.63 16 17 C 0.11 0.27 6.19 36.01 0.22 0.50 16 18 C -0.08 -0.24 5.51 -104.62 -0.58 -0.81 16 19 C -0.10 -0.26 9.70 -39.58 -0.38 -0.65 16 20 C -0.09 -0.14 9.29 -39.58 -0.37 -0.51 16 21 C -0.36 -0.30 4.59 -39.58 -0.18 -0.48 16 22 Si 1.06 -1.87 12.32 -169.99 -2.09 -3.96 16 23 C -0.45 0.44 8.65 101.05 0.87 1.32 16 24 C -0.45 0.46 8.53 101.05 0.86 1.32 16 25 C -0.45 0.50 8.53 101.05 0.86 1.36 16 26 C -0.09 -0.13 9.29 -39.58 -0.37 -0.50 16 27 C -0.10 -0.25 9.70 -39.58 -0.38 -0.63 16 28 H 0.06 -0.19 7.66 -51.93 -0.40 -0.59 16 29 H 0.11 -0.37 8.14 -51.93 -0.42 -0.80 16 30 H 0.06 -0.21 7.66 -51.93 -0.40 -0.60 16 31 H 0.14 -0.40 6.30 -52.49 -0.33 -0.73 16 32 H 0.14 -0.32 4.87 -52.49 -0.26 -0.58 16 33 H 0.12 0.00 7.22 -51.93 -0.37 -0.37 16 34 H 0.37 -1.04 8.70 45.56 0.40 -0.65 16 35 H 0.06 0.12 8.08 -51.93 -0.42 -0.30 16 36 H 0.06 0.12 8.04 -51.93 -0.42 -0.30 16 37 H 0.12 0.19 8.06 -52.49 -0.42 -0.23 16 38 H 0.12 -0.05 7.43 -52.49 -0.39 -0.44 16 39 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 42 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 44 H 0.07 -0.08 7.69 -51.93 -0.40 -0.48 16 45 H 0.07 -0.09 7.69 -51.93 -0.40 -0.49 16 46 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 47 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 48 H 0.12 -0.08 7.43 -52.49 -0.39 -0.47 16 49 H 0.12 0.15 8.06 -52.49 -0.42 -0.27 16 LS Contribution 424.47 15.07 6.40 6.40 Total: 0.00 -6.64 424.47 -10.39 -17.03 By element: Atomic # 1 Polarization: -2.27 SS G_CDS: -6.76 Total: -9.03 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -0.36 Total: 0.33 kcal Atomic # 8 Polarization: -2.13 SS G_CDS: -1.11 Total: -3.24 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: -6.43 Total: -9.32 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.13 Total: -2.17 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -6.64 -10.39 -17.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8767664_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.117 kcal (2) G-P(sol) polarization free energy of solvation -6.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds