Wall clock time and date at job start Mon Mar 8 2021 09:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35994 * 116.99970 * 2 1 4 4 C 1.38546 * 120.06730 * 359.97438 * 3 2 1 5 5 C 1.38283 * 120.01449 * 179.97438 * 4 3 2 6 6 C 1.38211 * 120.14770 * 0.02562 * 5 4 3 7 7 C 1.50709 * 119.92494 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47178 * 105.00076 * 7 6 5 9 9 Si 1.86300 * 109.47152 * 344.99998 * 7 6 5 10 10 H 1.48498 * 109.47280 * 60.00265 * 9 7 6 11 11 H 1.48498 * 109.46944 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46984 * 299.99984 * 9 7 6 13 13 C 1.38352 * 120.13946 * 0.02562 * 6 5 4 14 14 Br 1.89108 * 120.00633 * 179.97438 * 13 6 5 15 15 C 1.38602 * 119.98354 * 359.65585 * 13 6 5 16 16 O 1.36016 * 120.07345 * 180.32430 * 15 13 6 17 17 C 1.42897 * 116.99631 * 270.29156 * 16 15 13 18 18 C 1.50701 * 109.46652 * 180.02562 * 17 16 15 19 19 C 1.38233 * 120.00104 * 269.72675 * 18 17 16 20 20 C 1.38242 * 120.00197 * 179.77149 * 19 18 17 21 21 C 1.38237 * 119.99526 * 0.50469 * 20 19 18 22 22 Si 1.86797 * 119.99509 * 179.72966 * 21 20 19 23 23 C 1.86302 * 109.46889 * 270.01758 * 22 21 20 24 24 C 1.86291 * 109.47485 * 30.02208 * 22 21 20 25 25 C 1.86307 * 109.47117 * 150.02319 * 22 21 20 26 26 C 1.38232 * 120.00085 * 359.74943 * 21 20 19 27 27 C 1.38236 * 120.00360 * 0.02562 * 26 21 20 28 28 H 1.09002 * 109.47382 * 300.00030 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00137 * 1 2 3 31 31 H 1.07995 * 119.99442 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.92410 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46802 * 224.99987 * 7 6 5 34 34 H 0.96700 * 114.00081 * 299.99713 * 8 7 6 35 35 H 1.08998 * 109.47485 * 300.00244 * 17 16 15 36 36 H 1.09005 * 109.47073 * 60.00782 * 17 16 15 37 37 H 1.08002 * 120.00242 * 0.02562 * 19 18 17 38 38 H 1.07998 * 120.00052 * 180.23195 * 20 19 18 39 39 H 1.09004 * 109.46794 * 60.00323 * 23 22 21 40 40 H 1.09000 * 109.47053 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.47560 * 300.00319 * 23 22 21 42 42 H 1.08993 * 109.47358 * 60.00136 * 24 22 21 43 43 H 1.09000 * 109.47101 * 179.97438 * 24 22 21 44 44 H 1.09006 * 109.47293 * 299.99459 * 24 22 21 45 45 H 1.08999 * 109.46644 * 59.99683 * 25 22 21 46 46 H 1.08996 * 109.46887 * 179.97438 * 25 22 21 47 47 H 1.09001 * 109.46492 * 300.00079 * 25 22 21 48 48 H 1.07996 * 119.99824 * 179.97438 * 26 21 20 49 49 H 1.07999 * 120.00298 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3745 -0.0005 5 6 1.9221 3.6061 0.0000 6 6 3.3022 3.6807 0.0005 7 6 3.9824 5.0256 0.0005 8 8 4.5081 5.2935 1.3020 9 14 2.7489 6.3454 -0.4548 10 1 1.6417 6.3508 0.5347 11 1 3.4194 7.6704 -0.4554 12 1 2.2027 6.0669 -1.8073 13 6 4.0605 2.5235 0.0000 14 35 5.9486 2.6300 0.0000 15 6 3.4360 1.2862 0.0061 16 8 4.1797 0.1473 0.0123 17 6 4.5402 -0.3988 -1.2580 18 6 5.3557 -1.6496 -1.0538 19 6 6.7327 -1.5697 -0.9624 20 6 7.4803 -2.7165 -0.7703 21 6 6.8517 -3.9444 -0.6801 22 14 7.8626 -5.4948 -0.4281 23 6 8.3322 -6.2060 -2.0848 24 6 9.4057 -5.0813 0.5302 25 6 6.8579 -6.7437 0.5215 26 6 5.4751 -4.0248 -0.7767 27 6 4.7271 -2.8775 -0.9641 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 0.2147 2.3192 -0.0005 32 1 1.3335 4.5116 0.0000 33 1 4.7952 5.0216 -0.7258 34 1 3.8392 5.3121 2.0002 35 1 3.6376 -0.6415 -1.8187 36 1 5.1280 0.3317 -1.8140 37 1 7.2241 -0.6109 -1.0370 38 1 8.5559 -2.6537 -0.6952 39 1 8.9200 -5.4753 -2.6404 40 1 8.9217 -7.1110 -1.9378 41 1 7.4293 -6.4480 -2.6455 42 1 9.1309 -4.6652 1.4994 43 1 9.9953 -5.9861 0.6775 44 1 9.9936 -4.3506 -0.0255 45 1 5.9550 -6.9857 -0.0392 46 1 7.4476 -7.6486 0.6681 47 1 6.5831 -6.3276 1.4907 48 1 4.9840 -4.9841 -0.7066 49 1 3.6516 -2.9404 -1.0400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8767664_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:29:36 Heat of formation + Delta-G solvation = -80.028571 kcal Electronic energy + Delta-G solvation = -29875.507424 eV Core-core repulsion = 25745.649026 eV Total energy + Delta-G solvation = -4129.858398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 424.066 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84101 -40.23738 -39.34853 -38.87008 -37.02426 -33.41022 -33.01914 -31.87442 -31.53220 -30.30917 -29.42605 -28.50178 -28.29469 -28.26779 -27.08263 -26.29939 -23.62644 -23.46575 -22.55030 -22.10617 -19.57573 -18.58077 -18.46989 -17.90192 -17.62697 -16.89012 -16.46739 -16.27518 -16.20599 -15.93740 -15.72604 -15.40865 -15.14944 -14.92025 -14.47228 -14.29407 -14.10520 -14.05948 -13.96789 -13.86603 -13.72294 -13.60835 -13.35667 -13.27629 -13.12657 -13.11165 -12.96719 -12.64695 -12.48452 -12.39146 -12.29231 -12.16927 -11.97923 -11.70392 -11.63239 -11.27423 -11.00914 -10.93158 -10.76785 -10.75752 -10.42519 -9.95434 -9.79766 -9.65151 -9.32379 -0.34748 -0.10308 0.26572 0.46629 0.52893 1.11948 1.43334 1.53794 1.83930 1.91291 2.00225 2.02790 2.15169 2.18652 2.56297 2.67228 3.04209 3.44933 3.56500 3.73001 3.75027 3.82253 3.90308 4.02299 4.06807 4.18468 4.24458 4.29124 4.33736 4.34409 4.49046 4.53433 4.68626 4.71458 4.78608 4.84578 4.84871 4.85161 4.88807 4.89468 4.90006 4.91164 5.00849 5.01273 5.16819 5.24211 5.40898 5.57317 5.59149 5.63039 5.67992 5.70755 5.95510 6.13389 6.38961 6.72097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.114 3.886 4 C -0.171 4.171 5 C -0.082 4.082 6 C -0.123 4.123 7 C -0.090 4.090 8 O -0.542 6.542 9 Si 0.988 3.012 10 H -0.231 1.231 11 H -0.273 1.273 12 H -0.252 1.252 13 C -0.066 4.066 14 Br -0.026 7.026 15 C 0.066 3.934 16 O -0.323 6.323 17 C 0.111 3.889 18 C -0.097 4.097 19 C -0.121 4.121 20 C -0.104 4.104 21 C -0.374 4.374 22 Si 1.126 2.874 23 C -0.460 4.460 24 C -0.463 4.463 25 C -0.461 4.461 26 C -0.102 4.102 27 C -0.120 4.120 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.113 0.887 34 H 0.388 0.612 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.138 0.862 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.141 0.859 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -0.617 -1.432 5.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.066 3.934 4 C -0.190 4.190 5 C -0.100 4.100 6 C -0.126 4.126 7 C -0.199 4.199 8 O -0.349 6.349 9 Si 0.809 3.191 10 H -0.154 1.154 11 H -0.198 1.198 12 H -0.175 1.175 13 C -0.146 4.146 14 Br 0.060 6.940 15 C 0.019 3.981 16 O -0.240 6.240 17 C 0.037 3.963 18 C -0.097 4.097 19 C -0.139 4.139 20 C -0.121 4.121 21 C -0.413 4.413 22 Si 1.313 2.687 23 C -0.567 4.567 24 C -0.570 4.570 25 C -0.568 4.568 26 C -0.120 4.120 27 C -0.138 4.138 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.092 0.908 31 H 0.191 0.809 32 H 0.180 0.820 33 H 0.131 0.869 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.159 0.841 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.387 -0.164 -1.848 4.763 hybrid contribution -0.794 -0.015 0.212 0.822 sum -5.181 -0.178 -1.636 5.436 Atomic orbital electron populations 1.23479 0.75799 1.05923 1.02906 1.86180 1.23801 1.25678 1.87955 1.19423 0.90755 0.86311 0.96873 1.21594 1.02134 0.90471 1.04784 1.21247 0.92681 0.99054 0.97015 1.20277 0.93963 0.94879 1.03449 1.25267 1.06938 0.97796 0.89939 1.86563 1.38596 1.93439 1.16275 0.85173 0.76669 0.76022 0.81209 1.15414 1.19771 1.17518 1.22062 0.91834 0.94225 1.06481 1.96735 1.01379 1.98658 1.97208 1.17872 0.87529 0.85875 1.06808 1.86210 1.70063 1.37996 1.29732 1.21573 0.97735 0.92831 0.84111 1.19584 0.93964 0.93605 1.02594 1.21307 0.93465 0.99409 0.99710 1.21371 1.00620 0.92350 0.97787 1.28104 1.01255 1.11239 1.00721 0.77201 0.64089 0.61371 0.66059 1.26251 1.05604 1.07027 1.17784 1.26285 1.16109 1.05676 1.08918 1.26258 1.09651 1.12091 1.08816 1.21380 0.94522 0.98407 0.97657 1.21336 1.00282 0.92597 0.99582 0.91019 0.86644 0.90769 0.80933 0.81991 0.86933 0.76320 0.91816 0.91939 0.86205 0.84376 0.91414 0.90526 0.91294 0.91504 0.90504 0.90992 0.90815 0.90502 0.91455 0.84112 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.32 -1.32 10.28 -79.62 -0.82 -2.14 16 3 C 0.11 0.51 6.70 22.56 0.15 0.66 16 4 C -0.17 0.26 9.04 22.35 0.20 0.46 16 5 C -0.08 0.15 8.65 22.27 0.19 0.35 16 6 C -0.12 -0.26 5.26 -19.84 -0.10 -0.37 16 7 C -0.09 -0.03 2.02 71.24 0.14 0.11 16 8 O -0.54 -0.85 12.70 -148.98 -1.89 -2.75 16 9 Si 0.99 -3.01 25.49 68.60 1.75 -1.26 16 10 H -0.23 1.39 6.73 99.48 0.67 2.06 16 11 H -0.27 -0.28 7.11 99.48 0.71 0.43 16 12 H -0.25 0.59 7.11 99.48 0.71 1.30 16 13 C -0.07 -0.45 6.23 22.38 0.14 -0.31 16 14 Br -0.03 -0.20 31.38 -20.37 -0.64 -0.84 16 15 C 0.07 0.55 5.73 22.58 0.13 0.68 16 16 O -0.32 -3.57 9.16 -79.88 -0.73 -4.30 16 17 C 0.11 0.85 6.19 71.24 0.44 1.29 16 18 C -0.10 -0.78 5.51 -19.86 -0.11 -0.89 16 19 C -0.12 -0.86 9.70 22.27 0.22 -0.64 16 20 C -0.10 -0.42 9.29 22.27 0.21 -0.22 16 21 C -0.37 -0.79 4.59 22.27 0.10 -0.69 16 22 Si 1.13 -4.46 12.32 68.60 0.85 -3.61 16 23 C -0.46 1.17 8.65 113.37 0.98 2.15 16 24 C -0.46 1.10 8.53 113.37 0.97 2.07 16 25 C -0.46 1.33 8.53 113.37 0.97 2.30 16 26 C -0.10 -0.35 9.29 22.27 0.21 -0.14 16 27 C -0.12 -0.77 9.70 22.27 0.22 -0.55 16 28 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 29 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H 0.07 -0.62 7.66 -2.38 -0.02 -0.64 16 31 H 0.17 -1.40 6.30 -2.91 -0.02 -1.42 16 32 H 0.16 -1.17 4.87 -2.91 -0.01 -1.19 16 33 H 0.11 0.16 7.22 -2.39 -0.02 0.15 16 34 H 0.39 -2.16 8.70 -74.06 -0.64 -2.80 16 35 H 0.06 0.41 8.08 -2.39 -0.02 0.39 16 36 H 0.06 0.42 8.04 -2.38 -0.02 0.40 16 37 H 0.12 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.14 -0.04 7.43 -2.91 -0.02 -0.06 16 39 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 40 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 42 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 43 H 0.08 -0.25 7.96 -2.39 -0.02 -0.26 16 44 H 0.07 -0.19 7.69 -2.38 -0.02 -0.21 16 45 H 0.07 -0.26 7.69 -2.39 -0.02 -0.28 16 46 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 47 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 48 H 0.14 -0.20 7.43 -2.91 -0.02 -0.22 16 49 H 0.12 0.54 8.06 -2.91 -0.02 0.52 16 Total: 0.00 -17.04 424.47 5.71 -11.34 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: 1.03 Total: -3.73 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.16 Total: 7.30 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -3.44 Total: -9.19 kcal Atomic # 14 Polarization: -7.46 SS G_CDS: 2.59 Total: -4.87 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -0.64 Total: -0.84 kcal Total: -17.04 5.71 -11.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8767664_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.693 kcal (2) G-P(sol) polarization free energy of solvation -17.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds