Wall clock time and date at job start Mon Mar 8 2021 10:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46589 * 2 1 4 4 C 1.52995 * 109.46898 * 240.00031 * 2 1 3 5 5 Si 1.86296 * 109.47218 * 119.99701 * 2 1 3 6 6 C 1.86304 * 109.47411 * 300.00152 * 5 2 1 7 7 C 1.86301 * 109.47333 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47079 * 60.00383 * 5 2 1 9 9 C 1.42898 * 114.00123 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.47286 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.47046 * 64.99657 * 10 9 8 12 12 C 1.35905 * 116.99604 * 180.02562 * 11 10 9 13 13 C 1.38701 * 120.05928 * 359.72208 * 12 11 10 14 14 C 1.38165 * 119.94777 * 179.74693 * 13 12 11 15 15 C 1.38247 * 120.05118 * 0.53349 * 14 13 12 16 16 C 1.50706 * 119.94579 * 179.72341 * 15 14 13 17 17 O 1.42906 * 109.46698 * 245.01988 * 16 15 14 18 18 Si 1.86302 * 109.46810 * 5.01596 * 16 15 14 19 19 H 1.48500 * 109.46750 * 60.00353 * 18 16 15 20 20 H 1.48506 * 109.46807 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47206 * 300.00081 * 18 16 15 22 22 C 1.38291 * 120.11159 * 359.74026 * 15 14 13 23 23 C 1.38119 * 120.05480 * 359.97438 * 22 15 14 24 24 C 1.50697 * 120.02609 * 180.02562 * 23 22 15 25 25 O 1.42901 * 109.47564 * 0.02562 * 24 23 22 26 26 H 1.09008 * 109.46944 * 299.99641 * 1 2 3 27 27 H 1.08993 * 109.47139 * 60.00142 * 1 2 3 28 28 H 1.08997 * 109.46610 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46921 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47774 * 299.99856 * 3 2 1 31 31 H 1.09000 * 109.47444 * 60.00555 * 3 2 1 32 32 H 1.08996 * 109.47130 * 299.99770 * 4 2 1 33 33 H 1.09002 * 109.47233 * 59.99731 * 4 2 1 34 34 H 1.09000 * 109.46747 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47189 * 180.02562 * 6 5 2 36 36 H 1.08996 * 109.47018 * 299.99949 * 6 5 2 37 37 H 1.09000 * 109.46902 * 60.00277 * 6 5 2 38 38 H 1.09008 * 109.46898 * 300.00700 * 7 5 2 39 39 H 1.09007 * 109.46516 * 59.99913 * 7 5 2 40 40 H 1.08993 * 109.47254 * 180.02562 * 7 5 2 41 41 H 1.08998 * 109.47157 * 59.99464 * 9 8 5 42 42 H 1.09000 * 109.46822 * 299.99528 * 9 8 5 43 43 H 1.08999 * 109.47084 * 304.99700 * 10 9 8 44 44 H 1.08998 * 109.47592 * 184.99802 * 10 9 8 45 45 H 1.08001 * 120.02740 * 0.02646 * 13 12 11 46 46 H 1.07997 * 119.97753 * 180.24971 * 14 13 12 47 47 H 1.08996 * 109.47436 * 125.01921 * 16 15 14 48 48 H 0.96691 * 114.00186 * 60.00365 * 17 16 15 49 49 H 1.08000 * 119.96758 * 180.02562 * 22 15 14 50 50 H 1.08999 * 109.47776 * 120.01872 * 24 23 22 51 51 H 1.09010 * 109.46994 * 240.01839 * 24 23 22 52 52 H 0.96696 * 114.00605 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8781 1.5211 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8788 1.5208 8 8 1.6075 -2.4159 1.5212 9 6 2.0287 -3.1813 2.6520 10 6 1.4629 -4.5990 2.5477 11 8 2.0313 -5.2564 1.4133 12 6 1.6310 -6.5332 1.1756 13 6 0.7148 -7.1427 2.0199 14 6 0.3055 -8.4390 1.7731 15 6 0.8168 -9.1324 0.6919 16 6 0.3734 -10.5485 0.4285 17 8 1.4848 -11.4328 0.5868 18 14 -0.9674 -11.0140 1.6353 19 1 -2.1222 -10.0950 1.4707 20 1 -1.4047 -12.4091 1.3753 21 1 -0.4444 -10.9087 3.0211 22 6 1.7347 -8.5290 -0.1482 23 6 2.1426 -7.2312 0.0910 24 6 3.1424 -6.5740 -0.8252 25 8 3.5153 -7.4886 -1.8580 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.8938 -0.5134 3.9323 36 1 1.8934 1.0277 3.0423 37 1 0.4401 0.0000 3.0423 38 1 4.3770 -1.3929 0.6307 39 1 4.3777 0.1488 1.5205 40 1 4.3774 -1.3930 2.4105 41 1 1.6639 -2.7111 3.5652 42 1 3.1175 -3.2251 2.6759 43 1 0.3799 -4.5506 2.4347 44 1 1.7093 -5.1560 3.4516 45 1 0.3182 -6.6028 2.8670 46 1 -0.4109 -8.9126 2.4279 47 1 -0.0104 -10.6258 -0.5888 48 1 1.8777 -11.4165 1.4701 49 1 2.1324 -9.0727 -0.9924 50 1 2.6971 -5.6846 -1.2710 51 1 4.0267 -6.2904 -0.2543 52 1 4.1583 -7.1320 -2.4859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_8845214_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:22 Heat of formation + Delta-G solvation = -198.203333 kcal Electronic energy + Delta-G solvation = -28703.939485 eV Core-core repulsion = 24791.921780 eV Total energy + Delta-G solvation = -3912.017705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39684 -39.36346 -38.02868 -37.70298 -36.88035 -36.79507 -32.95577 -31.72132 -30.64060 -29.43993 -29.14930 -27.90401 -27.43167 -27.22016 -26.19638 -24.57185 -22.37773 -21.76037 -20.46299 -19.36238 -18.50946 -18.17158 -17.95517 -16.91354 -16.74744 -16.47547 -16.16307 -16.05633 -15.79818 -15.52786 -15.39930 -15.17562 -14.97974 -14.90441 -14.83355 -14.74785 -14.10546 -13.87711 -13.68541 -13.60793 -13.49808 -13.32642 -13.28827 -12.99157 -12.97039 -12.84156 -12.72724 -12.45160 -12.24465 -12.12319 -11.99742 -11.91625 -11.84778 -11.73866 -11.61966 -11.49013 -11.35008 -11.19906 -10.44558 -10.31356 -10.12311 -9.73352 -9.03874 0.31763 0.42791 1.21024 1.36138 1.45767 1.54973 1.67337 1.94961 1.98407 2.13788 2.36021 2.69958 3.21328 3.56300 3.66832 3.83142 3.88132 3.92883 4.01280 4.07525 4.08116 4.11110 4.18015 4.26193 4.39776 4.43478 4.47262 4.55242 4.59567 4.61338 4.64048 4.66192 4.67233 4.68540 4.76923 4.81859 4.87331 4.96063 5.05989 5.06608 5.07087 5.12828 5.26755 5.29774 5.30942 5.37021 5.37262 5.45460 5.47534 5.54173 5.56986 5.85843 6.40055 6.64241 6.73297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.286 2.714 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.087 3.913 10 C 0.056 3.944 11 O -0.302 6.302 12 C 0.142 3.858 13 C -0.205 4.205 14 C -0.085 4.085 15 C -0.161 4.161 16 C -0.074 4.074 17 O -0.538 6.538 18 Si 0.949 3.051 19 H -0.251 1.251 20 H -0.255 1.255 21 H -0.253 1.253 22 C -0.028 4.028 23 C -0.124 4.124 24 C 0.128 3.872 25 O -0.571 6.571 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.133 0.867 46 H 0.122 0.878 47 H 0.116 0.884 48 H 0.375 0.625 49 H 0.144 0.856 50 H 0.062 0.938 51 H 0.060 0.940 52 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.581 2.747 2.845 3.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.418 2.582 6 C -0.614 4.614 7 C -0.612 4.612 8 O -0.578 6.578 9 C 0.011 3.989 10 C -0.019 4.019 11 O -0.215 6.215 12 C 0.096 3.904 13 C -0.224 4.224 14 C -0.103 4.103 15 C -0.162 4.162 16 C -0.185 4.185 17 O -0.343 6.343 18 Si 0.773 3.227 19 H -0.175 1.175 20 H -0.179 1.179 21 H -0.177 1.177 22 C -0.046 4.046 23 C -0.124 4.124 24 C 0.051 3.949 25 O -0.377 6.377 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.150 0.850 46 H 0.140 0.860 47 H 0.134 0.866 48 H 0.222 0.778 49 H 0.162 0.838 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.652 1.948 2.880 3.538 hybrid contribution 0.862 1.263 0.382 1.576 sum 0.210 3.211 3.262 4.582 Atomic orbital electron populations 1.21512 0.93832 1.01990 1.01782 1.25773 1.00661 1.02598 1.12729 1.21558 1.00775 0.94911 1.02148 1.21504 1.00579 1.00291 0.96711 0.76735 0.63095 0.53353 0.65043 1.27049 1.07032 1.09620 1.17695 1.27027 1.24996 1.04693 1.04523 1.85409 1.79111 1.45997 1.47260 1.22084 0.99327 0.89763 0.87727 1.23031 0.99246 0.91862 0.87786 1.86119 1.64673 1.23492 1.47233 1.18708 0.93904 0.83917 0.93840 1.21076 1.02233 0.96937 1.02143 1.20839 0.98614 0.94335 0.96504 1.20214 1.01179 0.97318 0.97471 1.24896 0.96834 0.87108 1.09666 1.86523 1.48052 1.62627 1.37135 0.85710 0.77882 0.80934 0.78205 1.17488 1.17865 1.17708 1.20711 0.93435 0.92406 0.98031 1.19081 1.01951 0.95093 0.96314 1.20631 0.95675 0.90671 0.87962 1.86409 1.65916 1.43051 1.42358 0.92737 0.92774 0.92184 0.92517 0.92481 0.92544 0.92105 0.92821 0.92722 0.91513 0.90624 0.90837 0.90795 0.90735 0.91514 0.90412 0.91422 0.90614 0.90574 0.84970 0.86027 0.86581 0.77816 0.83818 0.91973 0.92230 0.76762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 7.85 37.16 0.29 0.31 16 2 C -0.37 0.20 0.53 -90.62 -0.05 0.15 16 3 C -0.14 0.12 7.85 37.16 0.29 0.41 16 4 C -0.13 0.00 7.85 37.16 0.29 0.29 16 5 Si 1.29 -1.99 8.45 -169.99 -1.44 -3.43 16 6 C -0.51 0.77 8.50 101.05 0.86 1.63 16 7 C -0.51 0.56 8.50 101.05 0.86 1.42 16 8 O -0.62 0.10 8.52 -40.09 -0.34 -0.24 16 9 C 0.09 -0.16 5.50 37.16 0.20 0.04 16 10 C 0.06 -0.07 5.12 37.16 0.19 0.12 16 11 O -0.30 -0.47 9.53 -24.30 -0.23 -0.71 16 12 C 0.14 0.31 6.66 -39.22 -0.26 0.05 16 13 C -0.21 -0.21 9.04 -39.44 -0.36 -0.57 16 14 C -0.09 -0.10 8.66 -39.60 -0.34 -0.44 16 15 C -0.16 -0.28 5.35 -104.60 -0.56 -0.84 16 16 C -0.07 -0.05 2.80 36.01 0.10 0.05 16 17 O -0.54 -0.76 12.83 -35.23 -0.45 -1.21 16 18 Si 0.95 0.03 25.13 -169.99 -4.27 -4.24 16 19 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 20 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 21 H -0.25 0.02 7.04 56.52 0.40 0.42 16 22 C -0.03 -0.08 9.01 -39.61 -0.36 -0.44 16 23 C -0.12 -0.35 5.89 -104.48 -0.62 -0.96 16 24 C 0.13 0.18 6.91 36.00 0.25 0.43 16 25 O -0.57 -0.74 12.14 -35.23 -0.43 -1.17 16 26 H 0.05 -0.04 7.79 -51.92 -0.40 -0.45 16 27 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 29 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.09 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 33 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 34 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.14 7.48 -51.93 -0.39 -0.53 16 36 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 37 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.04 7.79 -51.92 -0.40 -0.45 16 39 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.10 7.48 -51.93 -0.39 -0.49 16 41 H 0.08 -0.33 7.21 -51.93 -0.37 -0.70 16 42 H 0.07 -0.18 7.21 -51.93 -0.37 -0.55 16 43 H 0.08 -0.12 7.67 -51.93 -0.40 -0.52 16 44 H 0.08 -0.25 7.65 -51.93 -0.40 -0.65 16 45 H 0.13 -0.17 6.30 -52.49 -0.33 -0.50 16 46 H 0.12 -0.05 4.86 -52.49 -0.25 -0.30 16 47 H 0.12 0.01 7.96 -51.93 -0.41 -0.40 16 48 H 0.37 -0.69 8.70 45.56 0.40 -0.29 16 49 H 0.14 0.49 7.00 -52.49 -0.37 0.12 16 50 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 51 H 0.06 0.04 8.14 -51.92 -0.42 -0.38 16 52 H 0.38 -1.19 9.12 45.56 0.42 -0.78 16 LS Contribution 411.50 15.07 6.20 6.20 Total: 0.00 -6.64 411.50 -8.02 -14.66 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -7.85 Total: -11.50 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.80 Total: 1.64 kcal Atomic # 8 Polarization: -1.88 SS G_CDS: -1.45 Total: -3.33 kcal Atomic # 14 Polarization: -1.96 SS G_CDS: -5.71 Total: -7.67 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -6.64 -8.02 -14.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.546 kcal (2) G-P(sol) polarization free energy of solvation -6.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds