Wall clock time and date at job start Mon Mar 8 2021 10:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46589 * 2 1 4 4 C 1.52995 * 109.46898 * 240.00031 * 2 1 3 5 5 Si 1.86296 * 109.47218 * 119.99701 * 2 1 3 6 6 C 1.86304 * 109.47411 * 300.00152 * 5 2 1 7 7 C 1.86301 * 109.47333 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47079 * 60.00383 * 5 2 1 9 9 C 1.42898 * 114.00123 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.47286 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.47046 * 64.99657 * 10 9 8 12 12 C 1.35905 * 116.99604 * 180.02562 * 11 10 9 13 13 C 1.38701 * 120.05928 * 359.72208 * 12 11 10 14 14 C 1.38165 * 119.94777 * 179.74693 * 13 12 11 15 15 C 1.38247 * 120.05118 * 0.53349 * 14 13 12 16 16 C 1.50706 * 119.94579 * 179.72341 * 15 14 13 17 17 O 1.42906 * 109.46698 * 245.01988 * 16 15 14 18 18 Si 1.86302 * 109.46810 * 5.01596 * 16 15 14 19 19 H 1.48500 * 109.46750 * 60.00353 * 18 16 15 20 20 H 1.48506 * 109.46807 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47206 * 300.00081 * 18 16 15 22 22 C 1.38291 * 120.11159 * 359.74026 * 15 14 13 23 23 C 1.38119 * 120.05480 * 359.97438 * 22 15 14 24 24 C 1.50697 * 120.02609 * 180.02562 * 23 22 15 25 25 O 1.42901 * 109.47564 * 0.02562 * 24 23 22 26 26 H 1.09008 * 109.46944 * 299.99641 * 1 2 3 27 27 H 1.08993 * 109.47139 * 60.00142 * 1 2 3 28 28 H 1.08997 * 109.46610 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46921 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47774 * 299.99856 * 3 2 1 31 31 H 1.09000 * 109.47444 * 60.00555 * 3 2 1 32 32 H 1.08996 * 109.47130 * 299.99770 * 4 2 1 33 33 H 1.09002 * 109.47233 * 59.99731 * 4 2 1 34 34 H 1.09000 * 109.46747 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47189 * 180.02562 * 6 5 2 36 36 H 1.08996 * 109.47018 * 299.99949 * 6 5 2 37 37 H 1.09000 * 109.46902 * 60.00277 * 6 5 2 38 38 H 1.09008 * 109.46898 * 300.00700 * 7 5 2 39 39 H 1.09007 * 109.46516 * 59.99913 * 7 5 2 40 40 H 1.08993 * 109.47254 * 180.02562 * 7 5 2 41 41 H 1.08998 * 109.47157 * 59.99464 * 9 8 5 42 42 H 1.09000 * 109.46822 * 299.99528 * 9 8 5 43 43 H 1.08999 * 109.47084 * 304.99700 * 10 9 8 44 44 H 1.08998 * 109.47592 * 184.99802 * 10 9 8 45 45 H 1.08001 * 120.02740 * 0.02646 * 13 12 11 46 46 H 1.07997 * 119.97753 * 180.24971 * 14 13 12 47 47 H 1.08996 * 109.47436 * 125.01921 * 16 15 14 48 48 H 0.96691 * 114.00186 * 60.00365 * 17 16 15 49 49 H 1.08000 * 119.96758 * 180.02562 * 22 15 14 50 50 H 1.08999 * 109.47776 * 120.01872 * 24 23 22 51 51 H 1.09010 * 109.46994 * 240.01839 * 24 23 22 52 52 H 0.96696 * 114.00605 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1511 -0.8781 1.5211 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8788 1.5208 8 8 1.6075 -2.4159 1.5212 9 6 2.0287 -3.1813 2.6520 10 6 1.4629 -4.5990 2.5477 11 8 2.0313 -5.2564 1.4133 12 6 1.6310 -6.5332 1.1756 13 6 0.7148 -7.1427 2.0199 14 6 0.3055 -8.4390 1.7731 15 6 0.8168 -9.1324 0.6919 16 6 0.3734 -10.5485 0.4285 17 8 1.4848 -11.4328 0.5868 18 14 -0.9674 -11.0140 1.6353 19 1 -2.1222 -10.0950 1.4707 20 1 -1.4047 -12.4091 1.3753 21 1 -0.4444 -10.9087 3.0211 22 6 1.7347 -8.5290 -0.1482 23 6 2.1426 -7.2312 0.0910 24 6 3.1424 -6.5740 -0.8252 25 8 3.5153 -7.4886 -1.8580 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.8938 -0.5134 3.9323 36 1 1.8934 1.0277 3.0423 37 1 0.4401 0.0000 3.0423 38 1 4.3770 -1.3929 0.6307 39 1 4.3777 0.1488 1.5205 40 1 4.3774 -1.3930 2.4105 41 1 1.6639 -2.7111 3.5652 42 1 3.1175 -3.2251 2.6759 43 1 0.3799 -4.5506 2.4347 44 1 1.7093 -5.1560 3.4516 45 1 0.3182 -6.6028 2.8670 46 1 -0.4109 -8.9126 2.4279 47 1 -0.0104 -10.6258 -0.5888 48 1 1.8777 -11.4165 1.4701 49 1 2.1324 -9.0727 -0.9924 50 1 2.6971 -5.6846 -1.2710 51 1 4.0267 -6.2904 -0.2543 52 1 4.1583 -7.1320 -2.4859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8845214_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:21 Heat of formation + Delta-G solvation = -194.437059 kcal Electronic energy + Delta-G solvation = -28703.776167 eV Core-core repulsion = 24791.921780 eV Total energy + Delta-G solvation = -3911.854387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43907 -39.36331 -38.03727 -37.68145 -36.86254 -36.81764 -33.01463 -31.76833 -30.54543 -29.31433 -29.06014 -27.84165 -27.38282 -27.31334 -26.24444 -24.49212 -22.36948 -21.83520 -20.41676 -19.38339 -18.56056 -18.04957 -18.00632 -16.94237 -16.72580 -16.47803 -16.13060 -16.02626 -15.80463 -15.55527 -15.37275 -15.16266 -15.01482 -14.89779 -14.84938 -14.72600 -14.02356 -13.84058 -13.71159 -13.51418 -13.37523 -13.28874 -13.17141 -12.96353 -12.93594 -12.81358 -12.74066 -12.41033 -12.23868 -12.12258 -12.00119 -11.93164 -11.77270 -11.69869 -11.57471 -11.46800 -11.27173 -11.23745 -10.35885 -10.30928 -10.05436 -9.83678 -9.10962 0.22265 0.32691 1.19547 1.46475 1.53252 1.53701 1.78921 1.92370 2.13790 2.18938 2.48281 2.60584 3.21820 3.56655 3.69620 3.83823 3.93105 4.03650 4.10586 4.11881 4.13584 4.21427 4.31574 4.36969 4.37880 4.44293 4.46815 4.53197 4.62165 4.66986 4.75046 4.78521 4.79250 4.80354 4.81614 4.82600 4.83641 4.98028 4.99304 5.08439 5.08782 5.19629 5.22269 5.28530 5.33831 5.40082 5.43062 5.47356 5.49738 5.60237 5.65269 5.77047 6.39466 6.73506 6.85993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.318 2.682 6 C -0.516 4.516 7 C -0.519 4.519 8 O -0.638 6.638 9 C 0.075 3.925 10 C 0.045 3.955 11 O -0.315 6.315 12 C 0.134 3.866 13 C -0.205 4.205 14 C -0.091 4.091 15 C -0.165 4.165 16 C -0.080 4.080 17 O -0.555 6.555 18 Si 0.988 3.012 19 H -0.256 1.256 20 H -0.277 1.277 21 H -0.245 1.245 22 C -0.044 4.044 23 C -0.143 4.143 24 C 0.131 3.869 25 O -0.587 6.587 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.157 0.843 46 H 0.139 0.861 47 H 0.115 0.885 48 H 0.388 0.612 49 H 0.130 0.870 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 3.209 4.582 5.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.448 2.552 6 C -0.618 4.618 7 C -0.620 4.620 8 O -0.597 6.597 9 C 0.000 4.000 10 C -0.029 4.029 11 O -0.229 6.229 12 C 0.088 3.912 13 C -0.224 4.224 14 C -0.108 4.108 15 C -0.166 4.166 16 C -0.190 4.190 17 O -0.362 6.362 18 Si 0.812 3.188 19 H -0.180 1.180 20 H -0.202 1.202 21 H -0.169 1.169 22 C -0.062 4.062 23 C -0.144 4.144 24 C 0.053 3.947 25 O -0.396 6.396 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.175 0.825 46 H 0.156 0.844 47 H 0.133 0.867 48 H 0.236 0.764 49 H 0.148 0.852 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.769 2.432 4.602 5.261 hybrid contribution 0.928 1.133 -0.195 1.477 sum 0.159 3.564 4.406 5.670 Atomic orbital electron populations 1.21533 0.94315 1.01627 1.01850 1.25967 1.00362 1.03053 1.13333 1.21599 1.01235 0.94696 1.02217 1.21520 1.00927 0.99857 0.96970 0.76159 0.62294 0.52693 0.64087 1.27064 1.06957 1.09835 1.17947 1.27121 1.25570 1.04850 1.04456 1.85403 1.79423 1.46668 1.48243 1.22372 0.99955 0.89458 0.88232 1.23331 0.99455 0.92333 0.87803 1.86108 1.65054 1.23200 1.48511 1.18814 0.94177 0.84335 0.93889 1.21388 1.01532 0.96957 1.02479 1.21066 0.98781 0.94534 0.96441 1.20344 1.00918 0.97774 0.97527 1.25058 0.97031 0.86562 1.10313 1.86485 1.48494 1.62770 1.38475 0.85155 0.76683 0.79074 0.77886 1.18033 1.20222 1.16881 1.20681 0.94445 0.92761 0.98286 1.19331 1.02592 0.95376 0.97118 1.20600 0.95671 0.90450 0.87939 1.86378 1.66678 1.43638 1.42856 0.91865 0.93537 0.92736 0.91879 0.93287 0.91650 0.92864 0.93501 0.92196 0.90542 0.90445 0.90991 0.91549 0.90485 0.90913 0.87751 0.90793 0.90369 0.88328 0.82548 0.84375 0.86700 0.76355 0.85166 0.92037 0.91763 0.74851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 2 C -0.39 0.25 0.53 -10.79 -0.01 0.25 16 3 C -0.14 0.22 7.85 71.98 0.56 0.79 16 4 C -0.14 -0.15 7.85 71.98 0.56 0.41 16 5 Si 1.32 -4.67 8.45 68.60 0.58 -4.09 16 6 C -0.52 2.21 8.50 113.37 0.96 3.17 16 7 C -0.52 1.35 8.50 113.37 0.96 2.31 16 8 O -0.64 0.46 8.52 -144.34 -1.23 -0.77 16 9 C 0.07 -0.37 5.50 71.98 0.40 0.03 16 10 C 0.05 -0.16 5.12 71.98 0.37 0.21 16 11 O -0.32 -0.98 9.53 -87.83 -0.84 -1.81 16 12 C 0.13 0.61 6.66 22.50 0.15 0.76 16 13 C -0.21 -0.28 9.04 22.36 0.20 -0.08 16 14 C -0.09 -0.16 8.66 22.25 0.19 0.03 16 15 C -0.17 -0.68 5.35 -19.85 -0.11 -0.78 16 16 C -0.08 -0.16 2.80 71.24 0.20 0.04 16 17 O -0.56 -1.94 12.83 -148.98 -1.91 -3.85 16 18 Si 0.99 -0.30 25.13 68.60 1.72 1.42 16 19 H -0.26 -0.12 7.11 99.48 0.71 0.59 16 20 H -0.28 -0.91 7.11 99.48 0.71 -0.20 16 21 H -0.25 0.40 7.04 99.48 0.70 1.10 16 22 C -0.04 -0.32 9.01 22.25 0.20 -0.11 16 23 C -0.14 -0.97 5.89 -19.77 -0.12 -1.09 16 24 C 0.13 0.55 6.91 71.24 0.49 1.04 16 25 O -0.59 -2.34 12.14 -148.98 -1.81 -4.14 16 26 H 0.06 -0.10 7.79 -2.38 -0.02 -0.12 16 27 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 29 H 0.06 -0.19 7.79 -2.38 -0.02 -0.21 16 30 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 32 H 0.05 0.13 7.96 -2.39 -0.02 0.11 16 33 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 35 H 0.08 -0.47 7.48 -2.39 -0.02 -0.48 16 36 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 37 H 0.07 -0.26 7.79 -2.39 -0.02 -0.28 16 38 H 0.07 -0.07 7.79 -2.38 -0.02 -0.08 16 39 H 0.08 -0.24 7.79 -2.38 -0.02 -0.26 16 40 H 0.07 -0.28 7.48 -2.39 -0.02 -0.30 16 41 H 0.10 -1.10 7.21 -2.39 -0.02 -1.12 16 42 H 0.07 -0.47 7.21 -2.39 -0.02 -0.49 16 43 H 0.08 -0.33 7.67 -2.39 -0.02 -0.35 16 44 H 0.10 -0.83 7.65 -2.39 -0.02 -0.85 16 45 H 0.16 -0.69 6.30 -2.91 -0.02 -0.71 16 46 H 0.14 -0.29 4.86 -2.91 -0.01 -0.31 16 47 H 0.12 0.17 7.96 -2.39 -0.02 0.15 16 48 H 0.39 -1.28 8.70 -74.06 -0.64 -1.93 16 49 H 0.13 1.19 7.00 -2.91 -0.02 1.17 16 50 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 52 H 0.40 -2.07 9.12 -74.06 -0.68 -2.74 16 Total: 0.00 -15.62 411.50 2.44 -13.18 By element: Atomic # 1 Polarization: -7.76 SS G_CDS: 0.33 Total: -7.42 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.59 Total: 7.50 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -5.79 Total: -10.58 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.30 Total: -2.67 kcal Total: -15.62 2.44 -13.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.261 kcal (2) G-P(sol) polarization free energy of solvation -15.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds