Wall clock time and date at job start Mon Mar 8 2021 10:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.46676 * 2 1 4 4 C 1.50697 * 109.47418 * 120.00120 * 2 1 3 5 5 C 1.38248 * 119.94300 * 245.00143 * 4 2 1 6 6 C 1.38166 * 120.05366 * 179.97438 * 5 4 2 7 7 C 1.38708 * 119.94469 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05549 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99789 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.46851 * 179.97438 * 9 8 7 11 11 H 1.08999 * 112.85035 * 43.79606 * 10 9 8 12 12 C 1.53781 * 113.61083 * 174.99693 * 10 9 8 13 13 C 1.53784 * 87.07955 * 139.97932 * 12 10 9 14 14 H 1.08999 * 113.61672 * 89.19803 * 13 12 10 15 15 O 1.42901 * 113.61953 * 220.01844 * 13 12 10 16 16 C 1.53779 * 113.61265 * 272.49276 * 10 9 8 17 17 C 1.38753 * 119.88886 * 359.97438 * 7 6 5 18 18 C 1.50699 * 120.02544 * 180.02562 * 17 7 6 19 19 O 1.42903 * 109.47152 * 180.02562 * 18 17 7 20 20 C 1.38121 * 119.94424 * 0.27818 * 17 7 6 21 21 H 0.96697 * 114.00149 * 60.00434 * 1 2 3 22 22 H 1.09004 * 109.46974 * 240.00594 * 2 1 3 23 23 H 1.48496 * 110.00051 * 298.68083 * 3 2 1 24 24 H 1.48499 * 110.00019 * 60.00193 * 3 2 1 25 25 H 1.07994 * 119.97286 * 359.97438 * 5 4 2 26 26 H 1.08001 * 120.02571 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47164 * 299.99446 * 9 8 7 28 28 H 1.08994 * 109.47321 * 59.99538 * 9 8 7 29 29 H 1.08993 * 113.61390 * 254.52316 * 12 10 9 30 30 H 1.08996 * 113.61731 * 25.35199 * 12 10 9 31 31 H 0.96696 * 114.00490 * 179.97438 * 15 13 12 32 32 H 1.09003 * 113.61702 * 334.57265 * 16 10 9 33 33 H 1.09003 * 113.61269 * 105.47393 * 16 10 9 34 34 H 1.08997 * 109.47198 * 59.99999 * 18 17 7 35 35 H 1.09008 * 109.47393 * 299.99716 * 18 17 7 36 36 H 0.96700 * 114.00311 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.97302 * 179.72672 * 20 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6388 -0.0111 2.1905 6 6 3.1000 -0.6600 3.3198 7 6 2.8533 -2.0144 3.4894 8 8 3.3054 -2.6548 4.5995 9 6 4.0286 -1.8714 5.5510 10 6 4.4528 -2.7576 6.7239 11 1 4.8464 -3.7226 6.4047 12 6 5.3445 -2.0373 7.7491 13 6 4.5537 -2.7784 8.8401 14 1 4.9749 -3.7491 9.1016 15 8 4.2641 -1.9729 9.9844 16 6 3.3935 -2.8590 7.8340 17 6 2.1431 -2.7140 2.5243 18 6 1.8728 -4.1854 2.7057 19 8 1.1311 -4.6750 1.5866 20 6 1.6887 -2.0618 1.3947 21 1 -0.3933 0.4416 -0.7650 22 1 1.7924 -0.5138 -0.8901 23 1 1.5878 2.4586 -1.2242 24 1 1.5614 2.4679 1.2085 25 1 2.8310 1.0433 2.0578 26 1 3.6522 -0.1131 4.0697 27 1 4.9138 -1.4486 5.0759 28 1 3.3925 -1.0654 5.9165 29 1 6.3935 -2.3285 7.6963 30 1 5.2055 -0.9563 7.7655 31 1 3.7666 -2.4334 10.6739 32 1 2.7201 -2.0028 7.8745 33 1 2.8675 -3.8136 7.8497 34 1 1.2976 -4.3393 3.6186 35 1 2.8186 -4.7225 2.7772 36 1 0.9206 -5.6175 1.6361 37 1 1.1397 -2.6069 0.6411 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_8845214_11354860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:17 Heat of formation + Delta-G solvation = -112.695320 kcal Electronic energy + Delta-G solvation = -20226.079476 eV Core-core repulsion = 16936.363115 eV Total energy + Delta-G solvation = -3289.716361 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48590 -40.40313 -38.89832 -37.89521 -37.05411 -36.05381 -32.90199 -31.72099 -29.46452 -27.21467 -26.85540 -26.09051 -24.17792 -22.40286 -21.63552 -20.66071 -19.13464 -18.67289 -18.45383 -18.26540 -17.07221 -16.95520 -16.61843 -16.40477 -15.76194 -15.73026 -15.47771 -15.13395 -14.90060 -14.63913 -14.11286 -13.91703 -13.61543 -13.55488 -13.33337 -12.82919 -12.69678 -12.60861 -12.33327 -12.19502 -11.87391 -11.66198 -11.59971 -11.31120 -11.21968 -10.83785 -10.40729 -9.72347 -9.04253 -4.94279 0.32815 0.43624 1.32494 1.61505 1.97848 2.07981 2.65622 3.15855 3.19215 3.35901 3.43774 3.45897 3.69657 3.78728 3.82570 3.91776 4.01009 4.11792 4.16982 4.23182 4.37143 4.41146 4.43529 4.51582 4.58340 4.59639 4.67098 4.67715 4.83392 4.88568 5.02290 5.06498 5.25397 5.31701 5.37399 5.59589 5.84762 6.38454 6.51756 6.62844 6.70320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.070 4.070 3 Si 0.681 3.319 4 C -0.113 4.113 5 C -0.074 4.074 6 C -0.204 4.204 7 C 0.141 3.859 8 O -0.311 6.311 9 C 0.070 3.930 10 C -0.109 4.109 11 H 0.106 0.894 12 C -0.120 4.120 13 C 0.076 3.924 14 H 0.085 0.915 15 O -0.560 6.560 16 C -0.164 4.164 17 C -0.125 4.125 18 C 0.129 3.871 19 O -0.571 6.571 20 C -0.030 4.030 21 H 0.378 0.622 22 H 0.075 0.925 23 H -0.261 1.261 24 H -0.256 1.256 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.381 0.619 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.385 0.615 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -1.851 0.709 3.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.180 4.180 3 Si 0.582 3.418 4 C -0.113 4.113 5 C -0.092 4.092 6 C -0.222 4.222 7 C 0.095 3.905 8 O -0.225 6.225 9 C -0.005 4.005 10 C -0.127 4.127 11 H 0.124 0.876 12 C -0.157 4.157 13 C 0.017 3.983 14 H 0.103 0.897 15 O -0.366 6.366 16 C -0.201 4.201 17 C -0.125 4.125 18 C 0.052 3.948 19 O -0.377 6.377 20 C -0.048 4.048 21 H 0.226 0.774 22 H 0.093 0.907 23 H -0.187 1.187 24 H -0.181 1.181 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.228 0.772 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.232 0.768 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.304 -0.454 0.800 3.429 hybrid contribution -1.395 -0.909 0.027 1.665 sum 1.909 -1.363 0.827 2.487 Atomic orbital electron populations 1.86613 1.17943 1.80073 1.49627 1.24730 0.84343 1.10665 0.98230 0.95151 0.91681 0.74796 0.80127 1.19155 1.01670 0.94151 0.96324 1.20786 0.96494 0.99215 0.92699 1.21081 1.07019 0.93481 1.00633 1.18667 0.94347 0.90902 0.86590 1.86042 1.69061 1.38409 1.28986 1.22849 0.95456 0.93879 0.88288 1.22325 0.98052 1.00289 0.92071 0.87618 1.23065 0.98909 1.01207 0.92564 1.23296 0.96015 0.94328 0.84687 0.89741 1.86523 1.77969 1.41932 1.30170 1.23781 0.97391 1.03343 0.95634 1.19045 1.02940 0.95579 0.94983 1.20618 0.95230 0.90481 0.88484 1.86415 1.76628 1.30023 1.44673 1.20684 0.95161 0.92903 0.96029 0.77412 0.90716 1.18660 1.18095 0.85320 0.84820 0.91368 0.91536 0.90078 0.88774 0.77181 0.89060 0.90798 0.92219 0.92134 0.76769 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.39 12.81 -35.23 -0.45 -1.84 16 2 C -0.07 -0.09 2.79 36.00 0.10 0.01 16 3 Si 0.68 -0.03 29.85 -169.99 -5.07 -5.10 16 4 C -0.11 -0.32 5.38 -104.60 -0.56 -0.88 16 5 C -0.07 -0.13 8.66 -39.60 -0.34 -0.48 16 6 C -0.20 -0.32 9.04 -39.43 -0.36 -0.68 16 7 C 0.14 0.36 6.66 -39.22 -0.26 0.10 16 8 O -0.31 -0.51 9.56 -19.43 -0.19 -0.70 16 9 C 0.07 -0.04 4.58 37.16 0.17 0.13 16 10 C -0.11 0.15 4.01 -89.81 -0.36 -0.21 16 11 H 0.11 -0.17 8.14 -51.93 -0.42 -0.60 16 12 C -0.12 0.16 7.47 -25.92 -0.19 -0.03 16 13 C 0.08 -0.08 5.21 -25.92 -0.14 -0.21 16 14 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 15 O -0.56 -0.22 13.67 -35.23 -0.48 -0.70 16 16 C -0.16 0.17 7.46 -25.92 -0.19 -0.03 16 17 C -0.12 -0.41 5.89 -104.48 -0.62 -1.02 16 18 C 0.13 0.20 6.91 36.01 0.25 0.45 16 19 O -0.57 -0.84 12.14 -35.23 -0.43 -1.27 16 20 C -0.03 -0.11 9.01 -39.61 -0.36 -0.47 16 21 H 0.38 -0.60 8.74 45.56 0.40 -0.21 16 22 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 23 H -0.26 -0.48 7.11 56.52 0.40 -0.08 16 24 H -0.26 -0.76 7.05 56.52 0.40 -0.36 16 25 H 0.13 -0.01 4.86 -52.49 -0.26 -0.27 16 26 H 0.13 -0.09 6.30 -52.49 -0.33 -0.42 16 27 H 0.07 -0.11 7.66 -51.93 -0.40 -0.51 16 28 H 0.07 -0.06 7.36 -51.93 -0.38 -0.44 16 29 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 30 H 0.09 -0.08 8.10 -51.93 -0.42 -0.50 16 31 H 0.38 -1.34 9.12 45.56 0.42 -0.93 16 32 H 0.09 -0.01 7.90 -51.93 -0.41 -0.42 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 34 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.06 0.03 8.14 -51.92 -0.42 -0.39 16 36 H 0.38 -1.19 9.12 45.56 0.42 -0.78 16 37 H 0.14 0.58 7.00 -52.48 -0.37 0.21 16 LS Contribution 308.25 15.07 4.65 4.65 Total: 0.00 -8.17 308.25 -8.32 -16.49 By element: Atomic # 1 Polarization: -4.71 SS G_CDS: -3.49 Total: -8.20 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.86 Total: -3.33 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: -1.55 Total: -4.51 kcal Atomic # 14 Polarization: -0.03 SS G_CDS: -5.07 Total: -5.10 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -8.17 -8.32 -16.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_11354860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.207 kcal (2) G-P(sol) polarization free energy of solvation -8.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds