Wall clock time and date at job start Mon Mar 8 2021 11:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.42907 * 113.99876 * 60.00359 * 5 2 1 7 7 H 1.08993 * 112.84784 * 339.66489 * 6 5 2 8 8 C 1.53785 * 113.61395 * 110.86049 * 6 5 2 9 9 C 1.53954 * 87.01871 * 139.94989 * 8 6 5 10 10 H 1.08998 * 113.53323 * 89.18675 * 9 8 6 11 11 C 1.52995 * 113.74429 * 220.05612 * 9 8 6 12 12 O 1.42900 * 109.46874 * 272.59971 * 11 9 8 13 13 C 1.35908 * 116.99821 * 180.02562 * 12 11 9 14 14 C 1.38712 * 120.05449 * 180.02562 * 13 12 11 15 15 C 1.50698 * 120.02980 * 0.02562 * 14 13 12 16 16 O 1.42899 * 109.47362 * 180.02562 * 15 14 13 17 17 C 1.38167 * 119.94033 * 180.02562 * 14 13 12 18 18 C 1.38243 * 120.06058 * 359.97438 * 17 14 13 19 19 C 1.50695 * 119.94779 * 180.02562 * 18 17 14 20 20 O 1.42906 * 109.46798 * 299.99787 * 19 18 17 21 21 Si 1.86296 * 109.47399 * 179.97438 * 19 18 17 22 22 C 1.38292 * 120.10886 * 0.02562 * 18 17 14 23 23 C 1.38132 * 120.05466 * 359.68604 * 22 18 17 24 24 C 1.53782 * 113.61418 * 208.46856 * 6 5 2 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 29 29 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 34 34 H 1.09001 * 113.61218 * 254.53331 * 8 6 5 35 35 H 1.09000 * 113.61360 * 25.43224 * 8 6 5 36 36 H 1.08995 * 109.47421 * 32.59932 * 11 9 8 37 37 H 1.09001 * 109.47268 * 152.60071 * 11 9 8 38 38 H 1.08993 * 109.47141 * 300.01014 * 15 14 13 39 39 H 1.09000 * 109.46846 * 60.00578 * 15 14 13 40 40 H 0.96691 * 114.00254 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.96775 * 179.97438 * 17 14 13 42 42 H 1.08998 * 109.47077 * 59.99409 * 19 18 17 43 43 H 0.96702 * 113.99520 * 179.97438 * 20 19 18 44 44 H 1.48503 * 110.00129 * 298.68283 * 21 19 18 45 45 H 1.48497 * 109.99897 * 59.99725 * 21 19 18 46 46 H 1.08001 * 119.97289 * 179.97438 * 22 18 17 47 47 H 1.07996 * 120.02449 * 180.31990 * 23 22 18 48 48 H 1.08999 * 113.61419 * 334.56701 * 24 6 5 49 49 H 1.08996 * 113.61330 * 105.38780 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.5847 -0.0773 -2.3951 7 1 0.7075 0.5588 -2.2775 8 6 2.7271 0.5877 -3.1810 9 6 2.0775 0.0144 -4.4536 10 1 1.3356 0.6766 -4.8997 11 6 3.0857 -0.5203 -5.4726 12 8 3.5056 0.5428 -6.3302 13 6 4.4071 0.2343 -7.2993 14 6 4.8585 1.2181 -8.1668 15 6 4.3502 2.6306 -8.0353 16 8 4.9581 3.4507 -9.0353 17 6 5.7746 0.9017 -9.1515 18 6 6.2418 -0.3938 -9.2723 19 6 7.2414 -0.7359 -10.3469 20 8 6.6789 -0.4500 -11.6291 21 14 7.6677 -2.5466 -10.2448 22 6 5.7933 -1.3764 -8.4087 23 6 4.8820 -1.0639 -7.4187 24 6 1.4692 -1.0773 -3.5576 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2493 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -0.2074 2.1393 34 1 2.7127 1.6767 -3.1348 35 1 3.7089 0.1668 -2.9644 36 1 3.9504 -0.9277 -4.9488 37 1 2.6190 -1.3048 -6.0682 38 1 3.2682 2.6410 -8.1659 39 1 4.6006 3.0163 -7.0471 40 1 4.6769 4.3754 -9.0100 41 1 6.1261 1.6672 -9.8274 42 1 8.1443 -0.1419 -10.2056 43 1 7.2687 -0.6462 -12.3699 44 1 8.2829 -2.8501 -8.9278 45 1 6.4451 -3.3677 -10.4355 46 1 6.1594 -2.3878 -8.5053 47 1 4.5360 -1.8305 -6.7413 48 1 2.1065 -1.9543 -3.4441 49 1 0.4408 -1.3318 -3.8141 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8845214_14598386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:15:32 Heat of formation + Delta-G solvation = -115.042546 kcal Electronic energy + Delta-G solvation = -27634.873034 eV Core-core repulsion = 23722.904414 eV Total energy + Delta-G solvation = -3911.968620 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.68989 -40.87225 -39.34312 -38.20070 -37.90386 -37.03532 -33.97394 -33.10664 -31.92193 -29.63609 -28.39043 -28.32911 -27.41787 -26.69202 -26.21274 -24.33555 -22.69626 -21.83150 -20.85564 -20.65496 -19.34645 -18.58234 -18.30072 -17.83608 -17.18894 -17.12430 -16.71890 -16.53944 -16.02688 -15.96755 -15.75352 -15.62367 -15.36658 -15.00332 -14.66731 -14.45858 -14.42729 -14.07852 -13.82305 -13.64287 -13.49210 -13.32780 -13.18984 -13.04006 -12.88948 -12.80532 -12.68826 -12.60749 -12.40635 -12.27077 -12.07805 -11.88798 -11.87121 -11.71502 -11.40764 -11.33720 -11.21629 -10.40263 -10.32099 -9.99757 -9.26456 -4.96536 0.02223 0.15227 1.28673 1.61952 1.94211 1.94603 2.41362 2.71090 3.10127 3.38534 3.40178 3.49560 3.56621 3.71878 3.72865 3.75688 3.87865 3.89421 3.94818 4.03344 4.06590 4.08860 4.17655 4.18523 4.28813 4.35410 4.41284 4.45834 4.49075 4.59133 4.62412 4.65650 4.72772 4.73689 4.75452 4.79818 4.81592 4.88280 4.90884 4.96584 5.01669 5.08821 5.11400 5.15314 5.27478 5.30038 5.30052 5.34978 5.58635 6.19316 6.38231 6.82399 6.90974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 C -0.174 4.174 4 C -0.140 4.140 5 O -0.382 6.382 6 C 0.060 3.940 7 H 0.101 0.899 8 C -0.148 4.148 9 C -0.101 4.101 10 H 0.110 0.890 11 C 0.066 3.934 12 O -0.315 6.315 13 C 0.133 3.867 14 C -0.138 4.138 15 C 0.133 3.867 16 O -0.586 6.586 17 C -0.042 4.042 18 C -0.131 4.131 19 C -0.078 4.078 20 O -0.565 6.565 21 Si 0.780 3.220 22 C -0.101 4.101 23 C -0.205 4.205 24 C -0.123 4.123 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.402 0.598 44 H -0.287 1.287 45 H -0.296 1.296 46 H 0.123 0.877 47 H 0.151 0.849 48 H 0.089 0.911 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 0.913 0.949 1.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.059 3.941 3 C -0.231 4.231 4 C -0.197 4.197 5 O -0.302 6.302 6 C 0.002 3.998 7 H 0.119 0.881 8 C -0.186 4.186 9 C -0.120 4.120 10 H 0.128 0.872 11 C -0.008 4.008 12 O -0.228 6.228 13 C 0.088 3.912 14 C -0.138 4.138 15 C 0.056 3.944 16 O -0.395 6.395 17 C -0.060 4.060 18 C -0.131 4.131 19 C -0.188 4.188 20 O -0.375 6.375 21 Si 0.686 3.314 22 C -0.118 4.118 23 C -0.223 4.223 24 C -0.160 4.160 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.156 0.844 42 H 0.107 0.893 43 H 0.254 0.746 44 H -0.214 1.214 45 H -0.224 1.224 46 H 0.141 0.859 47 H 0.168 0.832 48 H 0.107 0.893 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.502 -0.178 1.650 1.733 hybrid contribution -0.564 0.847 0.501 1.134 sum -1.065 0.669 2.151 2.491 Atomic orbital electron populations 1.22448 0.94886 1.02821 1.03259 1.21676 0.93749 0.92442 0.86193 1.22443 1.01742 0.95805 1.03109 1.21798 1.01582 1.00827 0.95491 1.88011 1.74280 1.54285 1.13618 1.23667 0.97261 0.95796 0.83028 0.88088 1.23626 0.99140 1.01002 0.94820 1.22297 0.97661 0.99346 0.92666 0.87200 1.23003 0.97864 0.88958 0.90996 1.86039 1.56235 1.38607 1.41956 1.18720 0.90481 0.92730 0.89310 1.19421 1.01374 0.95454 0.97592 1.20588 0.96089 0.86410 0.91350 1.86374 1.71179 1.25848 1.56094 1.20733 0.93932 0.95863 0.95483 1.19666 1.01239 0.94016 0.98212 1.24848 0.96408 1.13561 0.83942 1.86454 1.46324 1.89796 1.14935 0.94386 0.81167 0.72500 0.83345 1.20845 0.97116 0.98140 0.95729 1.21302 1.02320 0.96154 1.02573 1.23193 1.02444 0.97332 0.93043 0.91778 0.92147 0.90403 0.90562 0.92542 0.92048 0.92264 0.92484 0.89712 0.90760 0.90216 0.91334 0.90779 0.91550 0.91366 0.74579 0.84361 0.89307 0.74648 1.21394 1.22351 0.85927 0.83189 0.89275 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.32 8.38 71.98 0.60 0.92 16 2 C 0.10 0.05 1.12 -10.79 -0.01 0.03 16 3 C -0.17 0.18 8.36 71.98 0.60 0.78 16 4 C -0.14 0.02 8.84 71.98 0.64 0.66 16 5 O -0.38 -1.47 10.00 -148.98 -1.49 -2.96 16 6 C 0.06 -0.01 2.80 31.12 0.09 0.07 16 7 H 0.10 -0.24 5.59 -2.39 -0.01 -0.25 16 8 C -0.15 0.01 7.40 31.18 0.23 0.24 16 9 C -0.10 0.15 4.00 -10.21 -0.04 0.11 16 10 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 11 C 0.07 0.03 4.58 71.98 0.33 0.36 16 12 O -0.31 -1.64 9.56 -92.51 -0.88 -2.52 16 13 C 0.13 1.06 6.66 22.51 0.15 1.20 16 14 C -0.14 -1.24 5.89 -19.77 -0.12 -1.36 16 15 C 0.13 0.59 6.91 71.24 0.49 1.08 16 16 O -0.59 -2.27 12.14 -148.98 -1.81 -4.08 16 17 C -0.04 -0.43 8.94 22.25 0.20 -0.23 16 18 C -0.13 -1.19 5.42 -19.85 -0.11 -1.30 16 19 C -0.08 -0.24 2.81 71.23 0.20 -0.04 16 20 O -0.57 -1.84 12.74 -148.98 -1.90 -3.74 16 21 Si 0.78 0.03 29.78 68.60 2.04 2.07 16 22 C -0.10 -0.87 8.66 22.26 0.19 -0.67 16 23 C -0.21 -1.44 9.04 22.37 0.20 -1.23 16 24 C -0.12 0.22 7.47 31.12 0.23 0.46 16 25 H 0.06 -0.18 6.23 -2.39 -0.01 -0.19 16 26 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.06 -0.10 7.01 -2.39 -0.02 -0.11 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.08 0.18 7.91 -2.39 -0.02 0.16 16 36 H 0.07 0.01 7.37 -2.39 -0.02 -0.01 16 37 H 0.07 -0.08 7.67 -2.39 -0.02 -0.10 16 38 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.40 -2.36 9.12 -74.06 -0.68 -3.03 16 41 H 0.14 1.48 7.00 -2.91 -0.02 1.46 16 42 H 0.09 -0.05 7.96 -2.39 -0.02 -0.06 16 43 H 0.40 -3.17 8.74 -74.06 -0.65 -3.82 16 44 H -0.29 -1.41 7.11 99.48 0.71 -0.70 16 45 H -0.30 -2.14 7.11 99.48 0.71 -1.44 16 46 H 0.12 0.84 4.87 -2.91 -0.01 0.82 16 47 H 0.15 0.34 6.30 -2.91 -0.02 0.32 16 48 H 0.09 -0.06 8.10 -2.39 -0.02 -0.08 16 49 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: 0.00 -17.85 387.31 -0.49 -18.34 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: -0.33 Total: -8.21 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 3.88 Total: 1.10 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -6.08 Total: -13.30 kcal Atomic # 14 Polarization: 0.03 SS G_CDS: 2.04 Total: 2.07 kcal Total: -17.85 -0.49 -18.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_14598386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.701 kcal (2) G-P(sol) polarization free energy of solvation -17.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds