Wall clock time and date at job start Mon Mar 8 2021 12:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47413 * 2 1 4 4 C 1.50698 * 109.47069 * 239.99737 * 2 1 3 5 5 C 1.38241 * 119.94537 * 120.02399 * 4 2 1 6 6 C 1.38169 * 120.05773 * 179.97438 * 5 4 2 7 7 C 1.38703 * 119.94277 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05406 * 180.29438 * 7 6 5 9 9 C 1.42905 * 117.00064 * 359.73121 * 8 7 6 10 10 C 1.53003 * 109.47126 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46914 * 54.99840 * 10 9 8 12 12 C 1.52991 * 109.47013 * 175.00093 * 10 9 8 13 13 C 1.53003 * 109.47013 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47101 * 299.99754 * 13 12 10 15 15 H 1.08996 * 109.47789 * 299.99961 * 14 13 12 16 16 O 1.42905 * 109.46902 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.46950 * 60.00233 * 14 13 12 18 18 C 1.52994 * 109.47167 * 299.99823 * 17 14 13 19 19 C 1.38755 * 119.89048 * 0.02803 * 7 6 5 20 20 C 1.50697 * 120.02843 * 179.97438 * 19 7 6 21 21 O 1.42900 * 109.47178 * 179.97438 * 20 19 7 22 22 C 1.38116 * 119.94123 * 359.97438 * 19 7 6 23 23 H 0.96697 * 113.99672 * 300.00503 * 1 2 3 24 24 H 1.09004 * 109.47042 * 120.00018 * 2 1 3 25 25 H 1.48505 * 110.00092 * 178.68016 * 3 2 1 26 26 H 1.48503 * 110.00147 * 299.99852 * 3 2 1 27 27 H 1.08005 * 119.97392 * 359.97438 * 5 4 2 28 28 H 1.08008 * 120.02679 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46692 * 299.99867 * 9 8 7 30 30 H 1.08996 * 109.46777 * 59.99891 * 9 8 7 31 31 H 1.09004 * 109.47040 * 299.99836 * 12 10 9 32 32 H 1.09005 * 109.47487 * 60.00098 * 12 10 9 33 33 H 1.08996 * 109.46768 * 60.00340 * 13 12 10 34 34 H 1.09000 * 109.46587 * 179.97438 * 13 12 10 35 35 H 0.96702 * 114.00098 * 180.02562 * 16 14 13 36 36 H 1.09001 * 109.47024 * 59.99779 * 17 14 13 37 37 H 1.09004 * 109.47004 * 179.97438 * 17 14 13 38 38 H 1.09001 * 109.47113 * 299.99901 * 18 17 14 39 39 H 1.09000 * 109.47250 * 180.02562 * 18 17 14 40 40 H 1.09003 * 109.47162 * 300.00129 * 20 19 7 41 41 H 1.09000 * 109.47556 * 59.99550 * 20 19 7 42 42 H 0.96706 * 113.99917 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.97134 * 180.02562 * 22 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7264 -0.0377 -2.1394 6 6 3.1887 -0.6870 -3.2681 7 6 2.8547 -2.0151 -3.4883 8 8 3.3131 -2.6577 -4.5947 9 6 4.1297 -1.9025 -5.4919 10 6 4.5477 -2.7871 -6.6683 11 1 3.6597 -3.2089 -7.1391 12 6 5.3166 -1.9471 -7.6900 13 6 5.7351 -2.8318 -8.8660 14 6 6.6308 -3.9639 -8.3591 15 1 7.5185 -3.5418 -7.8881 16 8 7.0212 -4.7905 -9.4575 17 6 5.8618 -4.8039 -7.3374 18 6 5.4433 -3.9193 -6.1614 19 6 2.0565 -2.6881 -2.5745 20 6 1.6913 -4.1309 -2.8110 21 8 0.8699 -4.5964 -1.7384 22 6 1.5969 -2.0346 -1.4479 23 1 -0.3933 0.4418 0.7650 24 1 1.7923 -0.5139 0.8900 25 1 3.5347 1.7702 0.0321 26 1 1.5616 2.4679 -1.2085 27 1 2.9865 0.9963 -1.9673 28 1 3.8102 -0.1610 -3.9777 29 1 3.5661 -1.0465 -5.8629 30 1 5.0186 -1.5526 -4.9671 31 1 4.6786 -1.1403 -8.0508 32 1 6.2045 -1.5253 -7.2191 33 1 4.8474 -3.2539 -9.3370 34 1 6.2825 -2.2332 -9.5941 35 1 7.5915 -5.5309 -9.2093 36 1 4.9741 -5.2261 -7.8084 37 1 6.4998 -5.6107 -6.9765 38 1 6.3310 -3.4971 -5.6903 39 1 4.8959 -4.5178 -5.4332 40 1 1.1463 -4.2184 -3.7509 41 1 2.5991 -4.7322 -2.8603 42 1 0.5959 -5.5198 -1.8249 43 1 0.9759 -2.5581 -0.7360 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_8845214_16737256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:56:36 Heat of formation + Delta-G solvation = -155.788918 kcal Electronic energy + Delta-G solvation = -24097.153940 eV Core-core repulsion = 20494.493662 eV Total energy + Delta-G solvation = -3602.660278 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53121 -40.25792 -38.99693 -37.89765 -37.12499 -36.62707 -33.09881 -32.04207 -31.92902 -31.37091 -27.39034 -26.94524 -25.93751 -23.89426 -23.36589 -21.97511 -21.66005 -20.96555 -19.23629 -18.47213 -18.26286 -18.22083 -17.20057 -17.07290 -16.61321 -16.39243 -15.86308 -15.63174 -15.54485 -15.52167 -15.03104 -14.88723 -14.75759 -14.33783 -13.94599 -13.89421 -13.62623 -13.34398 -13.33137 -13.22425 -12.78275 -12.62496 -12.29874 -12.22854 -12.00472 -11.99710 -11.80736 -11.66216 -11.60024 -11.26263 -11.20364 -10.79195 -10.27151 -9.78863 -9.08733 -4.96379 0.24497 0.37182 1.30973 1.64163 1.98109 2.05585 2.61377 3.08874 3.14882 3.44349 3.50338 3.59493 3.62132 3.73499 3.87510 3.94625 4.00129 4.02716 4.08173 4.20969 4.23717 4.28679 4.33976 4.35180 4.37467 4.40089 4.46237 4.52241 4.54687 4.68137 4.78998 4.84846 4.94204 4.97515 4.99270 5.04912 5.05143 5.18826 5.24610 5.29320 5.33371 5.51740 5.78903 6.32710 6.65111 6.67270 6.69219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.065 4.065 3 Si 0.682 3.318 4 C -0.115 4.115 5 C -0.084 4.084 6 C -0.202 4.202 7 C 0.141 3.859 8 O -0.309 6.309 9 C 0.062 3.938 10 C -0.087 4.087 11 H 0.085 0.915 12 C -0.110 4.110 13 C -0.111 4.111 14 C 0.103 3.897 15 H 0.055 0.945 16 O -0.569 6.569 17 C -0.152 4.152 18 C -0.111 4.111 19 C -0.123 4.123 20 C 0.130 3.870 21 O -0.571 6.571 22 C -0.027 4.027 23 H 0.381 0.619 24 H 0.073 0.927 25 H -0.256 1.256 26 H -0.252 1.252 27 H 0.120 0.880 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.379 0.621 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.385 0.615 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 0.278 2.269 2.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.176 4.176 3 Si 0.584 3.416 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.221 4.221 7 C 0.095 3.905 8 O -0.223 6.223 9 C -0.013 4.013 10 C -0.106 4.106 11 H 0.104 0.896 12 C -0.148 4.148 13 C -0.149 4.149 14 C 0.044 3.956 15 H 0.073 0.927 16 O -0.375 6.375 17 C -0.190 4.190 18 C -0.148 4.148 19 C -0.123 4.123 20 C 0.052 3.948 21 O -0.377 6.377 22 C -0.045 4.045 23 H 0.229 0.771 24 H 0.091 0.909 25 H -0.181 1.181 26 H -0.176 1.176 27 H 0.137 0.863 28 H 0.151 0.849 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.233 0.767 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.638 1.407 1.084 2.417 hybrid contribution 0.495 -1.208 -0.100 1.309 sum 2.133 0.199 0.984 2.358 Atomic orbital electron populations 1.86507 1.17282 1.81775 1.49565 1.24604 0.85663 1.09989 0.97358 0.95400 0.80521 0.78272 0.87444 1.19272 1.00861 0.94757 0.96599 1.20658 0.97341 0.98521 0.93621 1.21041 1.06349 0.94222 1.00471 1.18637 0.94167 0.90837 0.86831 1.86036 1.64809 1.40052 1.31397 1.22942 0.93787 0.94665 0.89948 1.21229 0.99492 0.95928 0.93912 0.89621 1.21478 1.00281 0.97811 0.95210 1.21436 0.99913 0.95813 0.97714 1.21842 0.96227 0.90926 0.86601 0.92727 1.86521 1.71655 1.44285 1.35023 1.22280 1.01464 0.98620 0.96623 1.21508 0.99298 0.96513 0.97509 1.19082 1.01559 0.96160 0.95545 1.20609 0.93925 0.90817 0.89421 1.86416 1.71143 1.32938 1.47170 1.20693 0.95540 0.92645 0.95620 0.77143 0.90887 1.18115 1.17620 0.86295 0.84931 0.91653 0.91725 0.90731 0.91267 0.90906 0.90784 0.77362 0.90918 0.91496 0.91764 0.90764 0.92103 0.92150 0.76703 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.77 12.74 -35.23 -0.45 -1.22 16 2 C -0.07 -0.08 2.81 36.00 0.10 0.02 16 3 Si 0.68 -0.20 29.78 -169.99 -5.06 -5.26 16 4 C -0.11 -0.43 5.42 -104.60 -0.57 -1.00 16 5 C -0.08 -0.29 8.66 -39.61 -0.34 -0.63 16 6 C -0.20 -0.54 9.04 -39.43 -0.36 -0.89 16 7 C 0.14 0.44 6.66 -39.22 -0.26 0.18 16 8 O -0.31 -0.57 9.10 -19.43 -0.18 -0.75 16 9 C 0.06 -0.03 4.12 37.16 0.15 0.12 16 10 C -0.09 0.10 2.43 -90.62 -0.22 -0.12 16 11 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 12 C -0.11 0.19 5.20 -26.73 -0.14 0.05 16 13 C -0.11 0.04 5.57 -26.73 -0.15 -0.10 16 14 C 0.10 -0.03 3.47 -26.74 -0.09 -0.12 16 15 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 16 O -0.57 -0.57 13.32 -35.23 -0.47 -1.04 16 17 C -0.15 0.15 5.54 -26.73 -0.15 0.00 16 18 C -0.11 0.11 5.10 -26.74 -0.14 -0.02 16 19 C -0.12 -0.45 5.89 -104.48 -0.62 -1.07 16 20 C 0.13 0.22 6.91 36.00 0.25 0.47 16 21 O -0.57 -0.89 12.14 -35.23 -0.43 -1.32 16 22 C -0.03 -0.11 8.94 -39.61 -0.35 -0.47 16 23 H 0.38 -1.46 8.74 45.56 0.40 -1.07 16 24 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 25 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 26 H -0.25 -0.72 7.11 56.52 0.40 -0.31 16 27 H 0.12 0.30 4.87 -52.48 -0.26 0.04 16 28 H 0.13 0.06 6.30 -52.48 -0.33 -0.27 16 29 H 0.07 -0.07 7.67 -51.93 -0.40 -0.47 16 30 H 0.06 -0.08 7.65 -51.93 -0.40 -0.47 16 31 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 32 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.38 -1.07 9.08 45.56 0.41 -0.66 16 36 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.07 -0.02 7.82 -51.93 -0.41 -0.42 16 40 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.06 0.05 8.14 -51.93 -0.42 -0.38 16 42 H 0.39 -1.17 9.12 45.56 0.42 -0.76 16 43 H 0.14 0.64 7.00 -52.49 -0.37 0.27 16 LS Contribution 342.86 15.07 5.17 5.17 Total: 0.00 -8.28 342.86 -9.49 -17.77 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -5.19 Total: -9.77 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.88 Total: -3.58 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: -1.52 Total: -4.33 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.06 Total: -5.26 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -8.28 -9.49 -17.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_16737256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.018 kcal (2) G-P(sol) polarization free energy of solvation -8.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds