Wall clock time and date at job start Mon Mar 8 2021 12:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47413 * 2 1 4 4 C 1.50698 * 109.47069 * 239.99737 * 2 1 3 5 5 C 1.38241 * 119.94537 * 120.02399 * 4 2 1 6 6 C 1.38169 * 120.05773 * 179.97438 * 5 4 2 7 7 C 1.38703 * 119.94277 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05406 * 180.29438 * 7 6 5 9 9 C 1.42905 * 117.00064 * 359.73121 * 8 7 6 10 10 C 1.53003 * 109.47126 * 179.97438 * 9 8 7 11 11 H 1.09005 * 109.46914 * 54.99840 * 10 9 8 12 12 C 1.52991 * 109.47013 * 175.00093 * 10 9 8 13 13 C 1.53003 * 109.47013 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47101 * 299.99754 * 13 12 10 15 15 H 1.08996 * 109.47789 * 299.99961 * 14 13 12 16 16 O 1.42905 * 109.46902 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.46950 * 60.00233 * 14 13 12 18 18 C 1.52994 * 109.47167 * 299.99823 * 17 14 13 19 19 C 1.38755 * 119.89048 * 0.02803 * 7 6 5 20 20 C 1.50697 * 120.02843 * 179.97438 * 19 7 6 21 21 O 1.42900 * 109.47178 * 179.97438 * 20 19 7 22 22 C 1.38116 * 119.94123 * 359.97438 * 19 7 6 23 23 H 0.96697 * 113.99672 * 300.00503 * 1 2 3 24 24 H 1.09004 * 109.47042 * 120.00018 * 2 1 3 25 25 H 1.48505 * 110.00092 * 178.68016 * 3 2 1 26 26 H 1.48503 * 110.00147 * 299.99852 * 3 2 1 27 27 H 1.08005 * 119.97392 * 359.97438 * 5 4 2 28 28 H 1.08008 * 120.02679 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.46692 * 299.99867 * 9 8 7 30 30 H 1.08996 * 109.46777 * 59.99891 * 9 8 7 31 31 H 1.09004 * 109.47040 * 299.99836 * 12 10 9 32 32 H 1.09005 * 109.47487 * 60.00098 * 12 10 9 33 33 H 1.08996 * 109.46768 * 60.00340 * 13 12 10 34 34 H 1.09000 * 109.46587 * 179.97438 * 13 12 10 35 35 H 0.96702 * 114.00098 * 180.02562 * 16 14 13 36 36 H 1.09001 * 109.47024 * 59.99779 * 17 14 13 37 37 H 1.09004 * 109.47004 * 179.97438 * 17 14 13 38 38 H 1.09001 * 109.47113 * 299.99901 * 18 17 14 39 39 H 1.09000 * 109.47250 * 180.02562 * 18 17 14 40 40 H 1.09003 * 109.47162 * 300.00129 * 20 19 7 41 41 H 1.09000 * 109.47556 * 59.99550 * 20 19 7 42 42 H 0.96706 * 113.99917 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.97134 * 180.02562 * 22 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7264 -0.0377 -2.1394 6 6 3.1887 -0.6870 -3.2681 7 6 2.8547 -2.0151 -3.4883 8 8 3.3131 -2.6577 -4.5947 9 6 4.1297 -1.9025 -5.4919 10 6 4.5477 -2.7871 -6.6683 11 1 3.6597 -3.2089 -7.1391 12 6 5.3166 -1.9471 -7.6900 13 6 5.7351 -2.8318 -8.8660 14 6 6.6308 -3.9639 -8.3591 15 1 7.5185 -3.5418 -7.8881 16 8 7.0212 -4.7905 -9.4575 17 6 5.8618 -4.8039 -7.3374 18 6 5.4433 -3.9193 -6.1614 19 6 2.0565 -2.6881 -2.5745 20 6 1.6913 -4.1309 -2.8110 21 8 0.8699 -4.5964 -1.7384 22 6 1.5969 -2.0346 -1.4479 23 1 -0.3933 0.4418 0.7650 24 1 1.7923 -0.5139 0.8900 25 1 3.5347 1.7702 0.0321 26 1 1.5616 2.4679 -1.2085 27 1 2.9865 0.9963 -1.9673 28 1 3.8102 -0.1610 -3.9777 29 1 3.5661 -1.0465 -5.8629 30 1 5.0186 -1.5526 -4.9671 31 1 4.6786 -1.1403 -8.0508 32 1 6.2045 -1.5253 -7.2191 33 1 4.8474 -3.2539 -9.3370 34 1 6.2825 -2.2332 -9.5941 35 1 7.5915 -5.5309 -9.2093 36 1 4.9741 -5.2261 -7.8084 37 1 6.4998 -5.6107 -6.9765 38 1 6.3310 -3.4971 -5.6903 39 1 4.8959 -4.5178 -5.4332 40 1 1.1463 -4.2184 -3.7509 41 1 2.5991 -4.7322 -2.8603 42 1 0.5959 -5.5198 -1.8249 43 1 0.9759 -2.5581 -0.7360 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8845214_16737256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:56:35 Heat of formation + Delta-G solvation = -158.151736 kcal Electronic energy + Delta-G solvation = -24097.256399 eV Core-core repulsion = 20494.493662 eV Total energy + Delta-G solvation = -3602.762737 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65294 -40.24649 -39.07222 -37.97687 -37.18345 -36.64678 -33.22720 -32.13749 -31.86001 -31.43206 -27.50992 -26.98791 -26.01253 -23.81920 -23.45449 -22.00030 -21.80045 -20.90386 -19.35780 -18.56027 -18.30028 -18.23105 -17.24449 -17.13042 -16.71243 -16.42662 -15.93021 -15.73392 -15.60038 -15.51234 -15.12101 -14.93500 -14.77580 -14.36529 -14.07388 -13.93944 -13.68362 -13.41254 -13.26296 -13.20925 -12.87412 -12.64780 -12.41998 -12.18530 -12.12472 -12.00722 -11.86630 -11.61992 -11.60553 -11.34940 -11.13447 -10.75436 -10.31555 -9.98958 -9.25191 -4.95727 0.03272 0.16418 1.29153 1.62382 1.94424 1.98866 2.42380 3.10347 3.18573 3.39978 3.54654 3.59127 3.64809 3.71747 3.76092 3.91437 4.00867 4.05349 4.10019 4.18082 4.25204 4.28609 4.31441 4.32015 4.41139 4.43893 4.44901 4.46928 4.54135 4.65477 4.77048 4.80936 4.92940 5.01611 5.02451 5.04514 5.10776 5.13915 5.14834 5.27771 5.31135 5.38958 5.59597 6.21540 6.81247 6.82475 6.91179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.131 4.131 5 C -0.101 4.101 6 C -0.204 4.204 7 C 0.135 3.865 8 O -0.315 6.315 9 C 0.057 3.943 10 C -0.082 4.082 11 H 0.076 0.924 12 C -0.104 4.104 13 C -0.113 4.113 14 C 0.101 3.899 15 H 0.063 0.937 16 O -0.591 6.591 17 C -0.146 4.146 18 C -0.108 4.108 19 C -0.138 4.138 20 C 0.133 3.867 21 O -0.586 6.586 22 C -0.043 4.043 23 H 0.402 0.598 24 H 0.088 0.912 25 H -0.285 1.285 26 H -0.296 1.296 27 H 0.124 0.876 28 H 0.153 0.847 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 0.582 2.607 3.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.188 4.188 3 Si 0.685 3.315 4 C -0.132 4.132 5 C -0.118 4.118 6 C -0.222 4.222 7 C 0.089 3.911 8 O -0.228 6.228 9 C -0.018 4.018 10 C -0.100 4.100 11 H 0.095 0.905 12 C -0.142 4.142 13 C -0.151 4.151 14 C 0.042 3.958 15 H 0.081 0.919 16 O -0.399 6.399 17 C -0.184 4.184 18 C -0.146 4.146 19 C -0.139 4.139 20 C 0.055 3.945 21 O -0.395 6.395 22 C -0.061 4.061 23 H 0.253 0.747 24 H 0.106 0.894 25 H -0.212 1.212 26 H -0.224 1.224 27 H 0.141 0.859 28 H 0.171 0.829 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.254 0.746 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.091 1.675 1.453 3.048 hybrid contribution 0.349 -1.346 -0.260 1.415 sum 2.441 0.328 1.193 2.736 Atomic orbital electron populations 1.86453 1.17412 1.82444 1.51254 1.24862 0.85788 1.11289 0.96895 0.94354 0.77245 0.75054 0.84806 1.19660 1.00892 0.94930 0.97673 1.20846 0.97903 0.98905 0.94170 1.21313 1.06133 0.94237 1.00556 1.18699 0.94219 0.91040 0.87162 1.86033 1.65071 1.40499 1.31229 1.23112 0.94009 0.94845 0.89791 1.21174 0.99194 0.95903 0.93750 0.90523 1.21436 1.00687 0.97544 0.94483 1.21457 0.99434 0.96028 0.98163 1.21913 0.96557 0.90891 0.86427 0.91936 1.86483 1.72222 1.45171 1.36036 1.22215 1.01049 0.98760 0.96399 1.21479 0.99409 0.96423 0.97244 1.19403 1.01616 0.97228 0.95605 1.20592 0.94346 0.90036 0.89489 1.86379 1.71198 1.34672 1.47280 1.20726 0.96252 0.93106 0.96056 0.74660 0.89379 1.21229 1.22355 0.85894 0.82909 0.90935 0.90677 0.90020 0.90278 0.92015 0.91164 0.75717 0.92037 0.90690 0.91137 0.91573 0.91752 0.91299 0.74613 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.65 12.74 -148.98 -1.90 -3.55 16 2 C -0.08 -0.20 2.81 71.24 0.20 0.00 16 3 Si 0.78 -0.49 29.78 68.60 2.04 1.55 16 4 C -0.13 -1.10 5.42 -19.85 -0.11 -1.20 16 5 C -0.10 -0.75 8.66 22.25 0.19 -0.56 16 6 C -0.20 -1.13 9.04 22.36 0.20 -0.92 16 7 C 0.13 0.90 6.66 22.50 0.15 1.05 16 8 O -0.31 -1.18 9.10 -92.45 -0.84 -2.02 16 9 C 0.06 -0.09 4.12 71.98 0.30 0.21 16 10 C -0.08 0.20 2.43 -10.80 -0.03 0.18 16 11 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 12 C -0.10 0.42 5.20 30.59 0.16 0.58 16 13 C -0.11 0.08 5.57 30.59 0.17 0.25 16 14 C 0.10 -0.08 3.47 30.59 0.11 0.03 16 15 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 16 O -0.59 -1.25 13.32 -148.98 -1.98 -3.24 16 17 C -0.15 0.29 5.54 30.59 0.17 0.46 16 18 C -0.11 0.25 5.10 30.59 0.16 0.40 16 19 C -0.14 -1.14 5.89 -19.77 -0.12 -1.26 16 20 C 0.13 0.54 6.91 71.24 0.49 1.03 16 21 O -0.59 -2.17 12.14 -148.98 -1.81 -3.98 16 22 C -0.04 -0.42 8.94 22.25 0.20 -0.22 16 23 H 0.40 -3.29 8.74 -74.06 -0.65 -3.94 16 24 H 0.09 -0.09 7.96 -2.38 -0.02 -0.11 16 25 H -0.29 -1.13 7.11 99.48 0.71 -0.43 16 26 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 27 H 0.12 0.70 4.87 -2.91 -0.01 0.68 16 28 H 0.15 0.04 6.30 -2.91 -0.02 0.02 16 29 H 0.07 -0.20 7.67 -2.39 -0.02 -0.22 16 30 H 0.08 -0.26 7.65 -2.39 -0.02 -0.28 16 31 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 33 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.39 -2.23 9.08 -74.06 -0.67 -2.91 16 36 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 37 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.07 -0.02 7.82 -2.39 -0.02 -0.04 16 40 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.40 -2.37 9.12 -74.05 -0.68 -3.05 16 43 H 0.14 1.42 7.00 -2.91 -0.02 1.40 16 Total: 0.00 -19.50 342.86 -3.17 -22.67 By element: Atomic # 1 Polarization: -10.53 SS G_CDS: -0.92 Total: -11.45 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 2.24 Total: 0.02 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -6.53 Total: -12.79 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: 2.04 Total: 1.55 kcal Total: -19.50 -3.17 -22.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_16737256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.485 kcal (2) G-P(sol) polarization free energy of solvation -19.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds