Wall clock time and date at job start Mon Mar 8 2021 13:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99999 * 2 1 4 4 C 1.52999 * 112.90830 * 66.16367 * 3 2 1 5 5 F 1.39892 * 109.47284 * 283.36937 * 4 3 2 6 6 F 1.39902 * 109.46837 * 43.37079 * 4 3 2 7 7 F 1.39897 * 109.47103 * 163.37008 * 4 3 2 8 8 C 1.53784 * 113.61112 * 294.91330 * 3 2 1 9 9 C 1.53785 * 87.07948 * 270.88374 * 8 3 2 10 10 H 1.08996 * 113.61349 * 219.93790 * 9 8 3 11 11 C 1.53002 * 113.60963 * 89.12034 * 9 8 3 12 12 O 1.42900 * 109.46787 * 174.99909 * 11 9 8 13 13 C 1.35897 * 117.00002 * 179.97438 * 12 11 9 14 14 C 1.38718 * 120.05628 * 179.97438 * 13 12 11 15 15 C 1.50705 * 120.02614 * 0.02562 * 14 13 12 16 16 O 1.42902 * 109.47113 * 180.02562 * 15 14 13 17 17 C 1.38161 * 119.94593 * 179.77459 * 14 13 12 18 18 C 1.38244 * 120.05079 * 0.51877 * 17 14 13 19 19 C 1.50704 * 119.94059 * 179.73097 * 18 17 14 20 20 O 1.42901 * 109.47348 * 299.72429 * 19 18 17 21 21 Si 1.86306 * 109.47027 * 179.72845 * 19 18 17 22 22 C 1.38282 * 120.11551 * 359.45265 * 18 17 14 23 23 C 1.38129 * 120.05352 * 0.30100 * 22 18 17 24 24 C 1.53781 * 87.08305 * 334.56813 * 9 8 3 25 25 H 1.09004 * 109.47590 * 182.57378 * 1 2 3 26 26 H 1.09007 * 109.47486 * 302.57262 * 1 2 3 27 27 H 1.08996 * 109.47421 * 62.57206 * 1 2 3 28 28 H 1.09001 * 113.61198 * 156.33507 * 8 3 2 29 29 H 1.08998 * 113.61286 * 25.43268 * 8 3 2 30 30 H 1.08995 * 109.47399 * 55.00132 * 11 9 8 31 31 H 1.08999 * 109.46702 * 294.99429 * 11 9 8 32 32 H 1.09000 * 109.47005 * 300.00328 * 15 14 13 33 33 H 1.08997 * 109.47307 * 59.99951 * 15 14 13 34 34 H 0.96691 * 113.99852 * 180.02562 * 16 15 14 35 35 H 1.07996 * 119.97803 * 180.24855 * 17 14 13 36 36 H 1.08996 * 109.47154 * 59.73054 * 19 18 17 37 37 H 0.96703 * 113.99975 * 300.00389 * 20 19 18 38 38 H 1.48498 * 110.00337 * 58.67696 * 21 19 18 39 39 H 1.48500 * 110.00107 * 180.02562 * 21 19 18 40 40 H 1.08007 * 119.97574 * 180.27194 * 22 18 17 41 41 H 1.07998 * 120.02379 * 179.97438 * 23 22 18 42 42 H 1.08997 * 113.61501 * 139.97655 * 24 9 8 43 43 H 1.08992 * 113.61506 * 270.88451 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7322 2.0812 1.2891 5 9 0.4171 2.5579 1.2721 6 9 1.9073 1.2351 2.3894 7 9 2.6179 3.1598 1.3846 8 6 1.7185 2.1096 -1.2780 9 6 2.9932 1.4839 -1.8684 10 1 3.5880 2.1803 -2.4594 11 6 2.7480 0.1547 -2.5853 12 8 3.9616 -0.2876 -3.1966 13 6 3.9164 -1.4621 -3.8787 14 6 5.0578 -1.9507 -4.4973 15 6 6.3500 -1.1797 -4.4130 16 8 7.3711 -1.8822 -5.1242 17 6 5.0104 -3.1473 -5.1863 18 6 3.8240 -3.8522 -5.2686 19 6 3.7737 -5.1542 -6.0259 20 8 4.1300 -4.9255 -7.3908 21 14 2.0491 -5.8543 -5.9433 22 6 2.6849 -3.3676 -4.6524 23 6 2.7283 -2.1743 -3.9581 24 6 3.4890 1.3214 -0.4218 25 1 -0.3634 -1.0266 0.0461 26 1 -0.3634 0.5533 0.8661 27 1 -0.3634 0.4733 -0.9121 28 1 1.7854 3.1887 -1.1396 29 1 0.8052 1.8030 -1.7878 30 1 1.9841 0.2903 -3.3508 31 1 2.4118 -0.5903 -1.8642 32 1 6.2135 -0.1926 -4.8545 33 1 6.6420 -1.0732 -3.3683 34 1 8.2324 -1.4429 -5.1118 35 1 5.8997 -3.5302 -5.6646 36 1 4.4743 -5.8607 -5.5809 37 1 3.5478 -4.3052 -7.8506 38 1 1.0801 -4.8869 -6.5180 39 1 1.9863 -7.1388 -6.6859 40 1 1.7602 -3.9224 -4.7145 41 1 1.8383 -1.7961 -3.4774 42 1 4.0049 0.3785 -0.2404 43 1 4.0399 2.1849 -0.0494 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8845214_17321602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:22 Heat of formation + Delta-G solvation = -247.658635 kcal Electronic energy + Delta-G solvation = -32084.946548 eV Core-core repulsion = 27069.940574 eV Total energy + Delta-G solvation = -5015.005974 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.127 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.25052 -48.78664 -48.71945 -41.78520 -41.04918 -39.12707 -37.99434 -37.22451 -36.82942 -32.97729 -31.74262 -30.45343 -28.17728 -27.56193 -27.20183 -26.75240 -26.07242 -23.79347 -22.67272 -21.84609 -20.53903 -19.84653 -19.54333 -19.23247 -19.14346 -18.52224 -18.06101 -17.27416 -16.98554 -16.76747 -16.43530 -16.41590 -16.19181 -15.78488 -15.68868 -15.63531 -15.55637 -15.49974 -15.17875 -15.08128 -14.94683 -14.89911 -14.84266 -14.57642 -14.28662 -13.91564 -13.68060 -13.59463 -13.21109 -13.05048 -12.80428 -12.64563 -12.34858 -12.30465 -12.11397 -11.86137 -11.74312 -11.66602 -11.50863 -11.27444 -10.77741 -10.58197 -9.82779 -9.12356 -4.92135 0.23511 0.32260 1.32294 1.54860 1.60028 1.96106 2.02501 2.12422 2.58090 2.60320 2.64576 2.91491 3.22163 3.32731 3.39602 3.42948 3.51476 3.68135 3.77856 3.85713 4.01944 4.16607 4.29009 4.29859 4.33437 4.36511 4.39164 4.43336 4.52152 4.52960 4.54369 4.59366 4.68463 4.73016 4.79426 4.83922 4.86598 4.98337 5.05920 5.24033 5.28923 5.47743 5.74043 5.75645 6.35997 6.49961 6.86123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.344 6.344 3 C 0.037 3.963 4 C 0.431 3.569 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.177 7.177 8 C -0.134 4.134 9 C -0.092 4.092 10 H 0.113 0.887 11 C 0.065 3.935 12 O -0.318 6.318 13 C 0.136 3.864 14 C -0.142 4.142 15 C 0.130 3.870 16 O -0.589 6.589 17 C -0.048 4.048 18 C -0.161 4.161 19 C -0.083 4.083 20 O -0.551 6.551 21 Si 0.772 3.228 22 C -0.077 4.077 23 C -0.201 4.201 24 C -0.115 4.115 25 H 0.114 0.886 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.385 0.615 38 H -0.277 1.277 39 H -0.304 1.304 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.090 0.910 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 2.856 0.936 4.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.262 6.262 3 C -0.006 4.006 4 C 0.377 3.623 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.159 7.159 8 C -0.171 4.171 9 C -0.111 4.111 10 H 0.131 0.869 11 C -0.009 4.009 12 O -0.232 6.232 13 C 0.090 3.910 14 C -0.143 4.143 15 C 0.052 3.948 16 O -0.398 6.398 17 C -0.066 4.066 18 C -0.162 4.162 19 C -0.192 4.192 20 O -0.359 6.359 21 Si 0.677 3.323 22 C -0.095 4.095 23 C -0.220 4.220 24 C -0.152 4.152 25 H 0.132 0.868 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.252 0.748 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.234 0.766 38 H -0.203 1.203 39 H -0.233 1.233 40 H 0.168 0.832 41 H 0.173 0.827 42 H 0.109 0.891 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.445 1.776 0.618 3.925 hybrid contribution 0.343 1.317 -0.328 1.400 sum -3.102 3.094 0.290 4.391 Atomic orbital electron populations 1.23310 0.78691 1.05319 1.01937 1.88078 1.22078 1.22180 1.93824 1.24178 1.00581 0.86386 0.89433 1.21578 0.74072 0.78704 0.87971 1.93175 1.37307 1.89264 1.96855 1.93189 1.95030 1.70985 1.57803 1.93169 1.68698 1.57397 1.96616 1.23629 0.99921 1.01377 0.92173 1.22021 0.97821 0.96231 0.94982 0.86854 1.22918 0.85062 0.96012 0.96910 1.85990 1.36999 1.35021 1.65182 1.18735 0.93542 0.86158 0.92586 1.19305 0.94180 0.97717 1.03084 1.20633 0.84910 0.93170 0.96042 1.86388 1.23396 1.53046 1.76947 1.20652 0.97803 0.92733 0.95444 1.20261 0.94172 0.98756 1.03003 1.25267 1.14498 0.97256 0.82138 1.86569 1.57685 1.68129 1.23509 0.94114 0.72231 0.76071 0.89885 1.21032 0.97783 0.95201 0.95455 1.21391 0.97775 0.97445 1.05356 1.23331 0.90632 1.05634 0.95571 0.86781 0.93823 0.90945 0.86052 0.87360 0.90101 0.89766 0.91728 0.91642 0.74818 0.85675 0.86535 0.76635 1.20349 1.23274 0.83241 0.82659 0.89137 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.44 113.37 1.18 1.17 16 2 O -0.34 0.76 8.35 -148.98 -1.24 -0.48 16 3 C 0.04 -0.12 0.85 -10.27 -0.01 -0.13 16 4 C 0.43 0.39 2.52 71.98 0.18 0.57 16 5 F -0.18 -0.25 15.26 44.97 0.69 0.44 16 6 F -0.19 -0.98 17.09 44.97 0.77 -0.22 16 7 F -0.18 -0.21 15.82 44.97 0.71 0.50 16 8 C -0.13 1.07 6.52 31.12 0.20 1.27 16 9 C -0.09 0.63 4.20 -10.27 -0.04 0.58 16 10 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 11 C 0.07 -0.32 4.32 71.98 0.31 -0.01 16 12 O -0.32 -0.08 9.56 -92.39 -0.88 -0.97 16 13 C 0.14 0.32 6.66 22.51 0.15 0.47 16 14 C -0.14 -0.71 5.89 -19.77 -0.12 -0.82 16 15 C 0.13 0.29 6.91 71.24 0.49 0.78 16 16 O -0.59 -1.72 12.14 -148.98 -1.81 -3.53 16 17 C -0.05 -0.30 8.94 22.25 0.20 -0.10 16 18 C -0.16 -0.45 5.39 -19.85 -0.11 -0.56 16 19 C -0.08 -0.16 2.82 71.24 0.20 0.04 16 20 O -0.55 -2.99 12.77 -148.98 -1.90 -4.89 16 21 Si 0.77 -1.00 29.78 68.60 2.04 1.04 16 22 C -0.08 0.04 8.66 22.25 0.19 0.24 16 23 C -0.20 0.14 9.04 22.36 0.20 0.34 16 24 C -0.11 0.52 6.89 31.12 0.21 0.74 16 25 H 0.11 -0.98 8.14 -2.38 -0.02 -1.00 16 26 H 0.04 -0.15 6.26 -2.38 -0.01 -0.17 16 27 H 0.07 -0.70 6.75 -2.39 -0.02 -0.72 16 28 H 0.12 -1.14 8.07 -2.39 -0.02 -1.16 16 29 H 0.11 -1.14 6.69 -2.39 -0.02 -1.16 16 30 H 0.08 -0.61 7.66 -2.39 -0.02 -0.63 16 31 H 0.08 -0.36 5.64 -2.39 -0.01 -0.38 16 32 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.40 -2.51 9.12 -74.06 -0.68 -3.18 16 35 H 0.13 1.13 7.00 -2.91 -0.02 1.11 16 36 H 0.12 0.16 7.96 -2.39 -0.02 0.14 16 37 H 0.38 -0.18 8.70 -74.06 -0.64 -0.82 16 38 H -0.28 -0.39 7.11 99.48 0.71 0.32 16 39 H -0.30 -2.00 7.11 99.48 0.71 -1.29 16 40 H 0.15 -0.81 4.88 -2.91 -0.01 -0.83 16 41 H 0.16 -0.90 6.30 -2.91 -0.02 -0.92 16 42 H 0.09 -0.24 8.10 -2.39 -0.02 -0.25 16 43 H 0.12 -0.74 7.00 -2.39 -0.02 -0.75 16 Total: 0.00 -17.54 357.74 1.44 -16.10 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: -0.19 Total: -12.58 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 3.25 Total: 4.58 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -5.84 Total: -9.86 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 2.17 Total: 0.72 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: 2.04 Total: 1.04 kcal Total: -17.54 1.44 -16.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_17321602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.556 kcal (2) G-P(sol) polarization free energy of solvation -17.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds