Wall clock time and date at job start Mon Mar 8 2021 08:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47676 * 2 1 4 4 C 1.53005 * 109.46657 * 240.00020 * 2 1 3 5 5 Si 1.86299 * 109.47173 * 120.00300 * 2 1 3 6 6 C 1.86294 * 109.47180 * 299.99666 * 5 2 1 7 7 C 1.86304 * 109.47027 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47051 * 59.99617 * 5 2 1 9 9 C 1.42902 * 113.99951 * 180.02562 * 8 5 2 10 10 C 1.52998 * 109.47305 * 179.97438 * 9 8 5 11 11 C 1.52998 * 109.47242 * 179.97438 * 10 9 8 12 12 O 1.42901 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.35905 * 116.99604 * 180.02562 * 12 11 10 14 14 C 1.38701 * 120.05928 * 359.72208 * 13 12 11 15 15 C 1.38165 * 119.94777 * 179.74693 * 14 13 12 16 16 C 1.38247 * 120.05118 * 0.53349 * 15 14 13 17 17 C 1.50706 * 119.94579 * 179.72341 * 16 15 14 18 18 O 1.42906 * 109.46698 * 245.01988 * 17 16 15 19 19 Si 1.86302 * 109.46810 * 5.01596 * 17 16 15 20 20 H 1.48500 * 109.46750 * 60.00353 * 19 17 16 21 21 H 1.48506 * 109.46807 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47206 * 300.00081 * 19 17 16 23 23 C 1.38291 * 120.11159 * 359.74026 * 16 15 14 24 24 C 1.38119 * 120.05480 * 359.97438 * 23 16 15 25 25 C 1.50697 * 120.02609 * 180.02562 * 24 23 16 26 26 O 1.42901 * 109.47564 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46747 * 300.00015 * 1 2 3 28 28 H 1.08996 * 109.47250 * 59.99670 * 1 2 3 29 29 H 1.08998 * 109.47638 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47272 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46654 * 300.00460 * 3 2 1 32 32 H 1.08998 * 109.46672 * 59.99906 * 3 2 1 33 33 H 1.08998 * 109.47230 * 299.99859 * 4 2 1 34 34 H 1.08996 * 109.47038 * 60.00179 * 4 2 1 35 35 H 1.09004 * 109.46918 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47369 * 180.02562 * 6 5 2 37 37 H 1.09007 * 109.47149 * 300.00031 * 6 5 2 38 38 H 1.08998 * 109.47450 * 59.99592 * 6 5 2 39 39 H 1.08995 * 109.46959 * 299.99907 * 7 5 2 40 40 H 1.08998 * 109.46821 * 59.99919 * 7 5 2 41 41 H 1.09006 * 109.46595 * 179.97438 * 7 5 2 42 42 H 1.08999 * 109.47307 * 59.99802 * 9 8 5 43 43 H 1.09006 * 109.47152 * 299.99659 * 9 8 5 44 44 H 1.08999 * 109.47046 * 59.99708 * 10 9 8 45 45 H 1.08996 * 109.47254 * 299.99804 * 10 9 8 46 46 H 1.08999 * 109.47084 * 60.00043 * 11 10 9 47 47 H 1.08998 * 109.47592 * 300.00144 * 11 10 9 48 48 H 1.08001 * 120.02740 * 0.02646 * 14 13 12 49 49 H 1.07997 * 119.97753 * 180.24971 * 15 14 13 50 50 H 1.08996 * 109.47436 * 125.01921 * 17 16 15 51 51 H 0.96703 * 113.99359 * 179.97438 * 18 17 16 52 52 H 1.08000 * 119.96758 * 180.02562 * 23 16 15 53 53 H 1.08999 * 109.47776 * 120.01872 * 25 24 23 54 54 H 1.09010 * 109.46994 * 240.01839 * 25 24 23 55 55 H 0.96696 * 114.00605 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0284 -3.1815 2.6519 10 6 1.4626 -4.5991 2.5475 11 6 1.9140 -5.4188 3.7579 12 8 1.3860 -6.7431 3.6602 13 6 1.6948 -7.6060 4.6637 14 6 2.4942 -7.1887 5.7175 15 6 2.8024 -8.0663 6.7391 16 6 2.3237 -9.3629 6.7059 17 6 2.6665 -10.3200 7.8184 18 8 3.4702 -11.3827 7.3016 19 14 3.6109 -9.4164 9.1460 20 1 2.7757 -8.3121 9.6829 21 1 3.9481 -10.3595 10.2425 22 1 4.8607 -8.8575 8.5712 23 6 1.5311 -9.7831 5.6535 24 6 1.2154 -8.9078 4.6328 25 6 0.3512 -9.3662 3.4866 26 8 -0.0134 -10.7341 3.6821 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2491 36 1 1.8938 -0.5137 3.9322 37 1 1.8935 1.0276 3.0422 38 1 0.4402 0.0000 3.0423 39 1 4.3769 -1.3930 0.6307 40 1 4.3777 0.1486 1.5204 41 1 4.3773 -1.3925 2.4109 42 1 1.6637 -2.7114 3.5651 43 1 3.1174 -3.2254 2.6757 44 1 1.8269 -5.0695 1.6343 45 1 0.3738 -4.5549 2.5240 46 1 1.5500 -4.9486 4.6714 47 1 3.0029 -5.4631 3.7812 48 1 2.8718 -6.1771 5.7417 49 1 3.4215 -7.7407 7.5619 50 1 1.7491 -10.7303 8.2403 51 1 3.7292 -12.0378 7.9641 52 1 1.1581 -10.7964 5.6302 53 1 -0.5490 -8.7533 3.4423 54 1 0.9042 -9.2675 2.5524 55 1 -0.5710 -11.0968 2.9803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8845214_18527726.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:19 Heat of formation + Delta-G solvation = -199.781821 kcal Electronic energy + Delta-G solvation = -29665.078551 eV Core-core repulsion = 25597.454778 eV Total energy + Delta-G solvation = -4067.623773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.46639 -39.29833 -38.17560 -37.88974 -37.03608 -36.82688 -33.78870 -32.61369 -31.65676 -29.37618 -29.05844 -27.84274 -27.41757 -27.37724 -26.96149 -25.87137 -23.48777 -22.08825 -21.69814 -20.41733 -19.30316 -18.53386 -18.34017 -17.73859 -17.48108 -16.85810 -16.68694 -16.28291 -15.99821 -15.72151 -15.65914 -15.65472 -15.22410 -14.94685 -14.85978 -14.76711 -14.57334 -14.35269 -14.04505 -13.94121 -13.72171 -13.50000 -13.37422 -13.18489 -12.99926 -12.95639 -12.95064 -12.88912 -12.74498 -12.60047 -12.39334 -12.29399 -12.07632 -11.90185 -11.74891 -11.70462 -11.64443 -11.62360 -11.34781 -11.28713 -11.26335 -10.30486 -10.28022 -10.05433 -9.85382 -9.14342 0.18993 0.29914 1.17489 1.43571 1.46716 1.51871 1.79053 1.90427 2.13480 2.13807 2.53864 2.55497 3.20452 3.51160 3.69486 3.88206 3.91246 3.93204 4.05656 4.11925 4.12267 4.12671 4.19085 4.32605 4.37464 4.37551 4.44602 4.46581 4.48111 4.49270 4.53291 4.74854 4.75016 4.77428 4.78735 4.79968 4.82652 4.82837 4.94820 5.00110 5.07495 5.07667 5.09238 5.09631 5.18600 5.21773 5.28277 5.35015 5.41036 5.44863 5.46115 5.55596 5.61284 5.65149 5.73096 6.33440 6.83835 6.87028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.318 2.682 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.640 6.640 9 C 0.079 3.921 10 C -0.119 4.119 11 C 0.051 3.949 12 O -0.321 6.321 13 C 0.132 3.868 14 C -0.203 4.203 15 C -0.094 4.094 16 C -0.129 4.129 17 C -0.083 4.083 18 O -0.565 6.565 19 Si 0.983 3.017 20 H -0.255 1.255 21 H -0.255 1.255 22 H -0.266 1.266 23 C -0.044 4.044 24 C -0.142 4.142 25 C 0.131 3.869 26 O -0.587 6.587 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.159 0.841 49 H 0.136 0.864 50 H 0.088 0.912 51 H 0.396 0.604 52 H 0.133 0.867 53 H 0.067 0.933 54 H 0.063 0.937 55 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 2.087 2.154 3.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.600 6.600 9 C 0.004 3.996 10 C -0.157 4.157 11 C -0.024 4.024 12 O -0.235 6.235 13 C 0.086 3.914 14 C -0.221 4.221 15 C -0.111 4.111 16 C -0.129 4.129 17 C -0.193 4.193 18 O -0.374 6.374 19 Si 0.807 3.193 20 H -0.179 1.179 21 H -0.180 1.180 22 H -0.191 1.191 23 C -0.062 4.062 24 C -0.143 4.143 25 C 0.054 3.946 26 O -0.396 6.396 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.177 0.823 49 H 0.154 0.846 50 H 0.106 0.894 51 H 0.246 0.754 52 H 0.151 0.849 53 H 0.085 0.915 54 H 0.081 0.919 55 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.873 2.728 2.442 3.764 hybrid contribution -0.258 -0.055 -0.426 0.501 sum 0.615 2.673 2.016 3.404 Atomic orbital electron populations 1.21540 0.94322 1.01731 1.01821 1.25965 1.00377 1.03088 1.13333 1.21600 1.01286 0.94693 1.02193 1.21542 1.01017 0.99989 0.96879 0.76146 0.62476 0.52590 0.63959 1.27093 1.06856 1.09864 1.18138 1.27103 1.25253 1.05028 1.04620 1.85321 1.79736 1.46708 1.48240 1.22008 0.99189 0.91001 0.87390 1.21470 1.02835 0.93703 0.97680 1.22936 0.99594 0.79706 1.00126 1.86015 1.71263 1.22895 1.43360 1.18739 0.95040 0.89193 0.88416 1.21371 1.03198 1.02338 0.95185 1.21035 0.98342 0.93068 0.98689 1.19500 1.01001 0.94482 0.97908 1.24827 1.00006 0.93040 1.01382 1.86480 1.71592 1.38400 1.40917 0.85237 0.79002 0.79372 0.75705 1.17891 1.17956 1.19104 1.20693 0.94849 0.99321 0.91341 1.19357 1.03779 0.91871 0.99312 1.20608 0.96770 0.82655 0.94611 1.86374 1.73977 1.26191 1.53028 0.92050 0.93437 0.92578 0.91788 0.93247 0.91754 0.92590 0.93430 0.92086 0.90758 0.90416 0.91204 0.91261 0.90419 0.90786 0.90698 0.90796 0.90555 0.90421 0.89939 0.90169 0.82335 0.84625 0.89428 0.75359 0.84899 0.91528 0.91872 0.74741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 2 C -0.39 0.34 0.53 -10.79 -0.01 0.33 16 3 C -0.14 0.24 7.85 71.98 0.56 0.80 16 4 C -0.14 -0.05 7.85 71.98 0.56 0.51 16 5 Si 1.32 -4.62 8.45 68.60 0.58 -4.04 16 6 C -0.52 1.75 8.50 113.37 0.96 2.71 16 7 C -0.52 1.65 8.50 113.37 0.96 2.62 16 8 O -0.64 0.57 8.56 -148.98 -1.28 -0.71 16 9 C 0.08 -0.35 5.12 71.98 0.37 0.01 16 10 C -0.12 0.31 5.95 30.59 0.18 0.50 16 11 C 0.05 -0.16 4.74 71.98 0.34 0.18 16 12 O -0.32 -1.03 9.56 -92.48 -0.88 -1.91 16 13 C 0.13 0.69 6.66 22.50 0.15 0.84 16 14 C -0.20 -0.52 9.04 22.36 0.20 -0.32 16 15 C -0.09 -0.37 8.66 22.25 0.19 -0.18 16 16 C -0.13 -0.78 5.39 -19.85 -0.11 -0.89 16 17 C -0.08 -0.14 2.79 71.24 0.20 0.06 16 18 O -0.56 -1.68 12.81 -148.98 -1.91 -3.59 16 19 Si 0.98 -0.57 25.13 68.60 1.72 1.16 16 20 H -0.25 0.00 7.11 99.48 0.71 0.70 16 21 H -0.26 0.26 7.11 99.48 0.71 0.96 16 22 H -0.27 -0.58 7.04 99.48 0.70 0.12 16 23 C -0.04 -0.36 9.01 22.25 0.20 -0.16 16 24 C -0.14 -1.05 5.89 -19.77 -0.12 -1.17 16 25 C 0.13 0.52 6.91 71.24 0.49 1.02 16 26 O -0.59 -2.17 12.14 -148.98 -1.81 -3.97 16 27 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 28 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.05 7.96 -2.39 -0.02 0.04 16 30 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 33 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 34 H 0.05 0.06 8.14 -2.39 -0.02 0.05 16 35 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 36 H 0.07 -0.36 7.48 -2.39 -0.02 -0.37 16 37 H 0.08 -0.29 7.79 -2.38 -0.02 -0.31 16 38 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 39 H 0.07 -0.15 7.79 -2.39 -0.02 -0.16 16 40 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 41 H 0.07 -0.34 7.48 -2.38 -0.02 -0.36 16 42 H 0.07 -0.59 7.21 -2.39 -0.02 -0.61 16 43 H 0.07 -0.57 7.21 -2.38 -0.02 -0.59 16 44 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.08 -0.52 7.67 -2.39 -0.02 -0.54 16 47 H 0.08 -0.47 7.65 -2.39 -0.02 -0.49 16 48 H 0.16 -0.57 6.30 -2.91 -0.02 -0.59 16 49 H 0.14 0.05 4.86 -2.91 -0.01 0.04 16 50 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 51 H 0.40 -2.58 8.74 -74.06 -0.65 -3.23 16 52 H 0.13 1.24 7.00 -2.91 -0.02 1.22 16 53 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 54 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 55 H 0.40 -2.28 9.12 -74.06 -0.68 -2.96 16 Total: 0.00 -16.31 433.09 2.44 -13.88 By element: Atomic # 1 Polarization: -8.50 SS G_CDS: 0.29 Total: -8.21 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.72 Total: 7.40 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -5.88 Total: -10.19 kcal Atomic # 14 Polarization: -5.18 SS G_CDS: 2.30 Total: -2.88 kcal Total: -16.31 2.44 -13.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_18527726.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.906 kcal (2) G-P(sol) polarization free energy of solvation -16.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds