Wall clock time and date at job start Mon Mar 8 2021 10:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38711 * 120.05802 * 359.72123 * 11 10 9 13 13 C 1.38159 * 119.94588 * 179.72416 * 12 11 10 14 14 C 1.38241 * 120.05550 * 0.53278 * 13 12 11 15 15 C 1.50706 * 119.94523 * 179.74616 * 14 13 12 16 16 O 1.42901 * 109.46921 * 245.02036 * 15 14 13 17 17 Si 1.86298 * 109.47278 * 5.02200 * 15 14 13 18 18 H 1.48493 * 109.46807 * 59.99912 * 17 15 14 19 19 H 1.48493 * 109.47153 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46874 * 300.00156 * 17 15 14 21 21 C 1.38285 * 120.11320 * 359.77009 * 14 13 12 22 22 C 1.38125 * 120.05275 * 359.95320 * 21 14 13 23 23 C 1.50703 * 120.02525 * 180.02562 * 22 21 14 24 24 O 1.42897 * 109.47503 * 0.02562 * 23 22 21 25 25 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 8 7 27 27 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 28 28 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 29 29 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 32 32 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 33 33 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 34 34 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 35 35 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 36 36 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 37 37 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 39 39 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 40 40 H 1.08005 * 120.02416 * 0.02562 * 12 11 10 41 41 H 1.07999 * 119.97665 * 180.27804 * 13 12 11 42 42 H 1.09000 * 109.47311 * 125.02349 * 15 14 13 43 43 H 0.96701 * 114.00109 * 60.00372 * 16 15 14 44 44 H 1.07997 * 119.97739 * 179.97438 * 21 14 13 45 45 H 1.09005 * 109.46904 * 120.02533 * 23 22 21 46 46 H 1.09003 * 109.46570 * 240.01526 * 23 22 21 47 47 H 0.96698 * 113.99714 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.99927 * 180.24100 * 25 8 7 49 49 H 1.08001 * 120.00310 * 179.72165 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 5.1777 -4.0821 7.0815 13 6 5.8017 -4.7036 8.1460 14 6 7.1820 -4.7401 8.2142 15 6 7.8600 -5.4137 9.3794 16 8 8.5802 -4.4406 10.1388 17 14 6.5771 -6.2214 10.4623 18 1 5.8289 -7.2324 9.6730 19 1 7.2452 -6.8845 11.6107 20 1 5.6347 -5.1903 10.9664 21 6 7.9416 -4.1592 7.2153 22 6 7.3225 -3.5417 6.1460 23 6 8.1510 -2.9094 5.0574 24 8 9.5383 -3.0790 5.3551 25 6 3.1758 -0.8216 3.8171 26 6 2.7155 -0.1698 2.6883 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8899 32 1 2.1206 2.2703 0.8901 33 1 2.1206 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4112 35 1 3.5740 -0.8778 -1.5214 36 1 2.5356 -2.7987 0.5825 37 1 3.3559 -3.9596 2.5930 38 1 3.5293 -2.3833 5.9053 39 1 3.5332 -3.9242 5.0141 40 1 4.0994 -4.0505 7.0305 41 1 5.2108 -5.1576 8.9276 42 1 8.5518 -6.1704 9.0094 43 1 8.0264 -3.7350 10.5000 44 1 9.0197 -4.1887 7.2710 45 1 7.9230 -3.3862 4.1041 46 1 7.9197 -1.8459 4.9963 47 1 10.1319 -2.6951 4.6954 48 1 3.3550 -0.2663 4.7259 49 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_8845214_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:02:46 Heat of formation + Delta-G solvation = -116.267411 kcal Electronic energy + Delta-G solvation = -27126.933249 eV Core-core repulsion = 23335.321420 eV Total energy + Delta-G solvation = -3791.611829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50531 -40.17139 -38.94873 -37.89016 -36.90048 -33.46188 -32.48287 -31.93818 -31.49583 -29.62426 -28.48721 -28.45766 -27.63476 -27.15556 -26.05970 -23.53620 -23.31261 -21.87719 -21.77384 -19.32337 -18.57088 -17.98593 -17.72253 -17.14042 -16.80238 -16.40997 -16.12828 -15.90031 -15.80290 -15.50030 -15.34473 -15.03997 -14.89001 -14.55055 -14.41692 -14.23098 -14.17420 -13.90324 -13.88405 -13.67015 -13.49851 -13.34682 -13.30152 -13.28489 -13.14614 -12.75797 -12.68787 -12.24573 -12.19649 -12.05563 -11.92903 -11.82307 -11.52498 -11.23547 -11.08692 -10.95044 -10.88361 -10.33735 -9.83541 -9.77358 -9.74473 -9.09308 0.11502 0.27471 0.38357 0.49272 1.19031 1.44143 1.53190 1.65324 1.80230 1.84098 1.93261 2.23756 2.49728 2.65691 2.98165 3.17503 3.53910 3.61232 3.74142 3.79586 3.84039 3.97812 4.04842 4.14715 4.16911 4.31014 4.41611 4.44282 4.46388 4.57163 4.62289 4.63976 4.65957 4.67142 4.71201 4.71343 4.72212 4.72317 4.82934 4.94653 5.02231 5.09894 5.25031 5.31287 5.36043 5.41634 5.45698 5.49496 5.53175 5.56794 5.57165 5.81393 6.05595 6.33988 6.62179 6.70124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.089 4.089 9 C 0.100 3.900 10 O -0.306 6.306 11 C 0.140 3.860 12 C -0.204 4.204 13 C -0.085 4.085 14 C -0.160 4.160 15 C -0.074 4.074 16 O -0.538 6.538 17 Si 0.949 3.051 18 H -0.251 1.251 19 H -0.254 1.254 20 H -0.253 1.253 21 C -0.027 4.027 22 C -0.123 4.123 23 C 0.128 3.872 24 O -0.571 6.571 25 C -0.106 4.106 26 C -0.092 4.092 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.375 0.625 44 H 0.145 0.855 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.385 0.615 48 H 0.121 0.879 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 1.423 -2.474 4.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.089 4.089 9 C 0.025 3.975 10 O -0.220 6.220 11 C 0.094 3.906 12 C -0.223 4.223 13 C -0.103 4.103 14 C -0.160 4.160 15 C -0.185 4.185 16 O -0.343 6.343 17 Si 0.772 3.228 18 H -0.175 1.175 19 H -0.178 1.178 20 H -0.177 1.177 21 C -0.045 4.045 22 C -0.124 4.124 23 C 0.051 3.949 24 O -0.377 6.377 25 C -0.124 4.124 26 C -0.110 4.110 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.222 0.778 44 H 0.163 0.837 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.233 0.767 48 H 0.139 0.861 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.207 0.402 -1.696 3.650 hybrid contribution -0.205 0.640 -0.386 0.775 sum -3.412 1.042 -2.081 4.131 Atomic orbital electron populations 1.26124 1.20420 1.04592 1.04530 0.78181 0.66860 0.66127 0.63672 1.26137 1.06490 1.18541 1.04593 1.26138 1.06489 1.08053 1.15083 1.27488 1.02988 0.99513 1.10211 1.21084 0.97459 0.94677 0.97738 1.21151 0.98804 0.99916 0.92555 1.19447 1.00987 0.94147 0.94323 1.21658 0.78659 1.00474 0.96662 1.86146 1.21049 1.72802 1.42018 1.18702 0.91170 0.93355 0.87334 1.21082 1.00073 1.04899 0.96209 1.20845 0.93989 0.97820 0.97598 1.20229 0.93331 1.03753 0.98724 1.24900 1.03969 0.95348 0.94302 1.86525 1.37693 1.39771 1.70325 0.85713 0.77330 0.80237 0.79502 1.17487 1.17790 1.17689 1.20717 1.00974 0.92625 0.90228 1.19091 0.89941 1.04575 0.98762 1.20618 0.80576 0.98759 0.94944 1.86408 1.16124 1.82570 1.52568 1.21151 0.98800 0.93533 0.98938 1.21085 0.97461 0.99781 0.92632 0.91167 0.90986 0.91165 0.91038 0.90915 0.91166 0.91166 0.90914 0.91038 0.85872 0.86125 0.90927 0.90920 0.84963 0.85955 0.86545 0.77786 0.83747 0.92181 0.92180 0.76707 0.86129 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.82 8.65 101.05 0.87 1.70 16 2 Si 1.06 -2.98 12.32 -169.99 -2.09 -5.08 16 3 C -0.45 0.92 8.53 101.05 0.86 1.78 16 4 C -0.45 0.91 8.53 101.05 0.86 1.78 16 5 C -0.36 0.18 4.59 -39.58 -0.18 0.00 16 6 C -0.09 0.00 9.29 -39.58 -0.37 -0.37 16 7 C -0.11 -0.07 9.70 -39.58 -0.38 -0.46 16 8 C -0.09 -0.08 5.51 -104.63 -0.58 -0.66 16 9 C 0.10 0.01 4.86 36.00 0.18 0.19 16 10 O -0.31 -0.67 9.55 -19.41 -0.19 -0.85 16 11 C 0.14 0.33 6.66 -39.22 -0.26 0.07 16 12 C -0.20 -0.26 9.04 -39.44 -0.36 -0.61 16 13 C -0.08 -0.11 8.66 -39.61 -0.34 -0.45 16 14 C -0.16 -0.28 5.35 -104.60 -0.56 -0.84 16 15 C -0.07 -0.05 2.80 36.01 0.10 0.05 16 16 O -0.54 -0.78 12.83 -35.23 -0.45 -1.23 16 17 Si 0.95 0.05 25.14 -169.99 -4.27 -4.23 16 18 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 19 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 20 H -0.25 -0.01 7.04 56.52 0.40 0.39 16 21 C -0.03 -0.08 9.01 -39.61 -0.36 -0.44 16 22 C -0.12 -0.36 5.89 -104.47 -0.62 -0.97 16 23 C 0.13 0.21 6.91 36.01 0.25 0.45 16 24 O -0.57 -0.78 12.14 -35.23 -0.43 -1.21 16 25 C -0.11 -0.07 9.70 -39.58 -0.38 -0.46 16 26 C -0.09 0.00 9.29 -39.58 -0.37 -0.37 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 37 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 38 H 0.07 -0.08 7.60 -51.93 -0.39 -0.47 16 39 H 0.07 -0.07 7.62 -51.93 -0.40 -0.47 16 40 H 0.13 -0.11 6.30 -52.48 -0.33 -0.44 16 41 H 0.12 -0.03 4.86 -52.49 -0.25 -0.29 16 42 H 0.12 0.01 7.96 -51.93 -0.41 -0.41 16 43 H 0.38 -0.66 8.70 45.56 0.40 -0.27 16 44 H 0.14 0.49 7.00 -52.49 -0.37 0.12 16 45 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 46 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 47 H 0.39 -1.17 9.12 45.56 0.42 -0.76 16 48 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 49 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 LS Contribution 403.75 15.07 6.08 6.08 Total: 0.00 -6.97 403.75 -9.29 -16.25 By element: Atomic # 1 Polarization: -3.83 SS G_CDS: -6.31 Total: -10.14 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.63 Total: 0.40 kcal Atomic # 8 Polarization: -2.22 SS G_CDS: -1.07 Total: -3.29 kcal Atomic # 14 Polarization: -2.94 SS G_CDS: -6.37 Total: -9.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -6.97 -9.29 -16.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.014 kcal (2) G-P(sol) polarization free energy of solvation -6.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds