Wall clock time and date at job start Mon Mar 8 2021 10:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38711 * 120.05802 * 359.72123 * 11 10 9 13 13 C 1.38159 * 119.94588 * 179.72416 * 12 11 10 14 14 C 1.38241 * 120.05550 * 0.53278 * 13 12 11 15 15 C 1.50706 * 119.94523 * 179.74616 * 14 13 12 16 16 O 1.42901 * 109.46921 * 245.02036 * 15 14 13 17 17 Si 1.86298 * 109.47278 * 5.02200 * 15 14 13 18 18 H 1.48493 * 109.46807 * 59.99912 * 17 15 14 19 19 H 1.48493 * 109.47153 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46874 * 300.00156 * 17 15 14 21 21 C 1.38285 * 120.11320 * 359.77009 * 14 13 12 22 22 C 1.38125 * 120.05275 * 359.95320 * 21 14 13 23 23 C 1.50703 * 120.02525 * 180.02562 * 22 21 14 24 24 O 1.42897 * 109.47503 * 0.02562 * 23 22 21 25 25 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 26 26 C 1.38234 * 120.00005 * 0.52168 * 25 8 7 27 27 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 28 28 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 29 29 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 32 32 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 33 33 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 34 34 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 35 35 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 36 36 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 37 37 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 39 39 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 40 40 H 1.08005 * 120.02416 * 0.02562 * 12 11 10 41 41 H 1.07999 * 119.97665 * 180.27804 * 13 12 11 42 42 H 1.09000 * 109.47311 * 125.02349 * 15 14 13 43 43 H 0.96701 * 114.00109 * 60.00372 * 16 15 14 44 44 H 1.07997 * 119.97739 * 179.97438 * 21 14 13 45 45 H 1.09005 * 109.46904 * 120.02533 * 23 22 21 46 46 H 1.09003 * 109.46570 * 240.01526 * 23 22 21 47 47 H 0.96698 * 113.99714 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.99927 * 180.24100 * 25 8 7 49 49 H 1.08001 * 120.00310 * 179.72165 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 5.1777 -4.0821 7.0815 13 6 5.8017 -4.7036 8.1460 14 6 7.1820 -4.7401 8.2142 15 6 7.8600 -5.4137 9.3794 16 8 8.5802 -4.4406 10.1388 17 14 6.5771 -6.2214 10.4623 18 1 5.8289 -7.2324 9.6730 19 1 7.2452 -6.8845 11.6107 20 1 5.6347 -5.1903 10.9664 21 6 7.9416 -4.1592 7.2153 22 6 7.3225 -3.5417 6.1460 23 6 8.1510 -2.9094 5.0574 24 8 9.5383 -3.0790 5.3551 25 6 3.1758 -0.8216 3.8171 26 6 2.7155 -0.1698 2.6883 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8899 32 1 2.1206 2.2703 0.8901 33 1 2.1206 -1.9058 -1.5212 34 1 2.1206 -0.3643 -2.4112 35 1 3.5740 -0.8778 -1.5214 36 1 2.5356 -2.7987 0.5825 37 1 3.3559 -3.9596 2.5930 38 1 3.5293 -2.3833 5.9053 39 1 3.5332 -3.9242 5.0141 40 1 4.0994 -4.0505 7.0305 41 1 5.2108 -5.1576 8.9276 42 1 8.5518 -6.1704 9.0094 43 1 8.0264 -3.7350 10.5000 44 1 9.0197 -4.1887 7.2710 45 1 7.9230 -3.3862 4.1041 46 1 7.9197 -1.8459 4.9963 47 1 10.1319 -2.6951 4.6954 48 1 3.3550 -0.2663 4.7259 49 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8845214_9403676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:02:45 Heat of formation + Delta-G solvation = -110.252104 kcal Electronic energy + Delta-G solvation = -27126.672405 eV Core-core repulsion = 23335.321420 eV Total energy + Delta-G solvation = -3791.350986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.156 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.58387 -40.15639 -39.00044 -37.97089 -36.97801 -33.48199 -32.54069 -31.89024 -31.57536 -29.44914 -28.30187 -28.27750 -27.65369 -27.23654 -26.11680 -23.49436 -23.37463 -21.90890 -21.83271 -19.40127 -18.64315 -18.05419 -17.70093 -17.16998 -16.85870 -16.43429 -16.16216 -15.92407 -15.85112 -15.54943 -15.37503 -15.10000 -14.97493 -14.53837 -14.34457 -14.06588 -14.06081 -13.82135 -13.74691 -13.70260 -13.43476 -13.37545 -13.14691 -13.12052 -12.97484 -12.85344 -12.64179 -12.25757 -12.20215 -12.09647 -11.99453 -11.80044 -11.57961 -11.31870 -10.93023 -10.78393 -10.76572 -10.38812 -9.89551 -9.81628 -9.70076 -9.19789 0.14620 0.15911 0.26021 0.51200 1.17328 1.44590 1.51704 1.83001 1.90445 1.97368 2.01749 2.27348 2.54211 2.66032 3.00588 3.16157 3.53327 3.59650 3.77444 3.79754 3.80316 3.95122 4.05633 4.15037 4.23171 4.26657 4.32024 4.39663 4.46989 4.52488 4.58552 4.70617 4.74246 4.84018 4.84023 4.87926 4.88627 4.88984 4.89987 4.92334 4.99304 5.15128 5.15384 5.21790 5.39394 5.42007 5.55927 5.58628 5.59094 5.67285 5.69654 5.70055 6.11145 6.27065 6.70827 6.82315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.102 4.102 9 C 0.098 3.902 10 O -0.318 6.318 11 C 0.131 3.869 12 C -0.204 4.204 13 C -0.089 4.089 14 C -0.162 4.162 15 C -0.079 4.079 16 O -0.555 6.555 17 Si 0.987 3.013 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.247 1.247 21 C -0.041 4.041 22 C -0.141 4.141 23 C 0.132 3.868 24 O -0.585 6.585 25 C -0.121 4.121 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.140 0.860 42 H 0.118 0.882 43 H 0.388 0.612 44 H 0.133 0.867 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.402 0.598 48 H 0.127 0.873 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 1.606 -2.652 5.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.103 4.103 9 C 0.024 3.976 10 O -0.232 6.232 11 C 0.086 3.914 12 C -0.222 4.222 13 C -0.107 4.107 14 C -0.162 4.162 15 C -0.189 4.189 16 O -0.362 6.362 17 Si 0.811 3.189 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.171 1.171 21 C -0.060 4.060 22 C -0.141 4.141 23 C 0.054 3.946 24 O -0.394 6.394 25 C -0.139 4.139 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.135 0.865 43 H 0.237 0.763 44 H 0.151 0.849 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.252 0.748 48 H 0.145 0.855 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.199 0.602 -1.879 4.639 hybrid contribution 0.124 0.603 -0.357 0.712 sum -4.075 1.205 -2.236 4.802 Atomic orbital electron populations 1.26279 1.21504 1.04490 1.04597 0.77158 0.65220 0.64560 0.61607 1.26288 1.06367 1.19466 1.04880 1.26289 1.06366 1.08515 1.15837 1.28039 1.02399 0.99601 1.11143 1.21390 0.97346 0.95208 0.98212 1.21379 0.99182 1.00488 0.92909 1.19606 1.01413 0.94462 0.94769 1.21790 0.77706 1.01233 0.96902 1.86125 1.22154 1.72855 1.42083 1.18796 0.91149 0.93716 0.87783 1.21358 1.01156 1.04053 0.95648 1.21064 0.93862 0.97728 0.98053 1.20367 0.93725 1.03467 0.98663 1.25057 1.04403 0.95212 0.94242 1.86488 1.38766 1.40455 1.70460 0.85169 0.76350 0.79506 0.77901 1.17954 1.20055 1.17094 1.20695 1.00586 0.93676 0.91002 1.19329 0.90654 1.04973 0.99182 1.20573 0.80637 0.98700 0.94677 1.86376 1.16366 1.82945 1.53698 1.21379 0.99166 0.93752 0.99641 1.21392 0.97342 1.00754 0.92665 0.91363 0.90672 0.91366 0.91389 0.90656 0.90899 0.90905 0.90655 0.91388 0.84333 0.85480 0.89818 0.89855 0.82905 0.84303 0.86458 0.76344 0.84896 0.92033 0.92064 0.74755 0.85464 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.93 8.65 113.37 0.98 2.91 16 2 Si 1.13 -6.95 12.32 68.60 0.85 -6.11 16 3 C -0.46 2.12 8.53 113.37 0.97 3.09 16 4 C -0.46 2.12 8.53 113.37 0.97 3.08 16 5 C -0.37 0.43 4.59 22.27 0.10 0.53 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 7 C -0.12 -0.22 9.70 22.27 0.22 0.00 16 8 C -0.10 -0.23 5.51 -19.87 -0.11 -0.34 16 9 C 0.10 0.03 4.86 71.23 0.35 0.38 16 10 O -0.32 -1.55 9.55 -92.35 -0.88 -2.43 16 11 C 0.13 0.69 6.66 22.51 0.15 0.84 16 12 C -0.20 -0.44 9.04 22.36 0.20 -0.24 16 13 C -0.09 -0.18 8.66 22.25 0.19 0.01 16 14 C -0.16 -0.65 5.35 -19.85 -0.11 -0.75 16 15 C -0.08 -0.14 2.80 71.24 0.20 0.06 16 16 O -0.55 -1.87 12.83 -148.98 -1.91 -3.78 16 17 Si 0.99 -0.32 25.14 68.60 1.72 1.41 16 18 H -0.26 -0.09 7.11 99.48 0.71 0.61 16 19 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 20 H -0.25 0.32 7.04 99.48 0.70 1.02 16 21 C -0.04 -0.29 9.01 22.25 0.20 -0.09 16 22 C -0.14 -0.97 5.89 -19.77 -0.12 -1.09 16 23 C 0.13 0.58 6.91 71.24 0.49 1.07 16 24 O -0.58 -2.24 12.14 -148.98 -1.81 -4.05 16 25 C -0.12 -0.21 9.70 22.27 0.22 0.01 16 26 C -0.10 0.00 9.29 22.27 0.21 0.20 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 29 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 32 H 0.07 -0.36 7.69 -2.38 -0.02 -0.38 16 33 H 0.07 -0.36 7.69 -2.39 -0.02 -0.38 16 34 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 36 H 0.14 -0.56 7.43 -2.91 -0.02 -0.58 16 37 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 38 H 0.08 -0.20 7.60 -2.39 -0.02 -0.22 16 39 H 0.08 -0.19 7.62 -2.39 -0.02 -0.21 16 40 H 0.15 -0.43 6.30 -2.91 -0.02 -0.44 16 41 H 0.14 -0.25 4.86 -2.91 -0.01 -0.26 16 42 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 43 H 0.39 -1.27 8.70 -74.06 -0.64 -1.92 16 44 H 0.13 1.16 7.00 -2.91 -0.02 1.14 16 45 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 46 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.40 -2.14 9.12 -74.06 -0.68 -2.82 16 48 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 49 H 0.14 -0.56 7.43 -2.91 -0.02 -0.59 16 Total: 0.00 -15.86 403.75 3.67 -12.19 By element: Atomic # 1 Polarization: -7.50 SS G_CDS: 0.39 Total: -7.11 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.31 Total: 9.88 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -4.60 Total: -10.27 kcal Atomic # 14 Polarization: -7.27 SS G_CDS: 2.57 Total: -4.70 kcal Total: -15.86 3.67 -12.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8845214_9403676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.058 kcal (2) G-P(sol) polarization free energy of solvation -15.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds