Wall clock time and date at job start Mon Mar 8 2021 11:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47573 * 2 1 4 4 C 1.52998 * 109.47038 * 239.99821 * 2 1 3 5 5 Si 1.86302 * 109.46991 * 120.00426 * 2 1 3 6 6 C 1.86303 * 109.47028 * 299.99448 * 5 2 1 7 7 C 1.86300 * 109.47271 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47356 * 59.99724 * 5 2 1 9 9 C 1.42903 * 114.00245 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.47161 * 179.97438 * 9 8 5 11 11 O 1.42904 * 109.46905 * 64.99975 * 10 9 8 12 12 C 1.35901 * 116.99748 * 179.97438 * 11 10 9 13 13 C 1.38723 * 120.03858 * 180.02562 * 12 11 10 14 14 C 1.38176 * 119.99194 * 180.02562 * 13 12 11 15 15 C 1.50706 * 119.96068 * 180.02562 * 14 13 12 16 16 O 1.42889 * 109.46757 * 299.97797 * 15 14 13 17 17 Si 1.86304 * 109.46987 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.47073 * 59.99961 * 17 15 14 19 19 H 1.48501 * 109.46660 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47130 * 299.99872 * 17 15 14 21 21 C 1.38215 * 120.08237 * 359.97438 * 14 13 12 22 22 C 1.38518 * 120.08211 * 359.97438 * 21 14 13 23 23 F 1.35097 * 119.99627 * 179.97438 * 22 21 14 24 24 C 1.38345 * 120.00758 * 359.97438 * 22 21 14 25 25 H 1.09001 * 109.47078 * 299.99955 * 1 2 3 26 26 H 1.08999 * 109.47047 * 59.99204 * 1 2 3 27 27 H 1.08995 * 109.47743 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47125 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47141 * 300.00168 * 3 2 1 30 30 H 1.09002 * 109.46826 * 60.00478 * 3 2 1 31 31 H 1.09003 * 109.47270 * 300.00604 * 4 2 1 32 32 H 1.09000 * 109.46872 * 60.00326 * 4 2 1 33 33 H 1.09000 * 109.47769 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47164 * 180.02562 * 6 5 2 35 35 H 1.08989 * 109.47308 * 300.00071 * 6 5 2 36 36 H 1.09007 * 109.46878 * 60.00207 * 6 5 2 37 37 H 1.09001 * 109.47258 * 299.99900 * 7 5 2 38 38 H 1.09003 * 109.47123 * 59.99918 * 7 5 2 39 39 H 1.09000 * 109.47303 * 179.97438 * 7 5 2 40 40 H 1.09005 * 109.46972 * 59.99722 * 9 8 5 41 41 H 1.08995 * 109.47113 * 300.00291 * 9 8 5 42 42 H 1.09003 * 109.47548 * 304.99972 * 10 9 8 43 43 H 1.08996 * 109.46838 * 185.00264 * 10 9 8 44 44 H 1.08000 * 120.00491 * 0.03929 * 13 12 11 45 45 H 1.09003 * 109.46723 * 59.97823 * 15 14 13 46 46 H 0.96702 * 114.00436 * 299.99340 * 16 15 14 47 47 H 1.07996 * 119.95886 * 179.72432 * 21 14 13 48 48 H 1.07998 * 120.04639 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 14 2.1509 -0.8784 1.5211 6 6 1.5300 -0.0001 3.0423 7 6 4.0139 -0.8791 1.5208 8 8 1.6072 -2.4160 1.5211 9 6 2.0284 -3.1815 2.6519 10 6 1.4625 -4.5992 2.5475 11 8 2.0308 -5.2566 1.4130 12 6 1.6313 -6.5337 1.1758 13 6 2.1435 -7.2315 0.0917 14 6 1.7362 -8.5297 -0.1489 15 6 2.2935 -9.2873 -1.3265 16 8 1.9711 -8.5948 -2.5340 17 14 1.5517 -10.9957 -1.3732 18 1 0.0762 -10.8912 -1.5051 19 1 2.1013 -11.7424 -2.5332 20 1 1.8867 -11.7153 -0.1182 21 6 0.8191 -9.1348 0.6896 22 6 0.3064 -8.4414 1.7737 23 9 -0.5903 -9.0343 2.5919 24 6 0.7125 -7.1418 2.0185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4423 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8901 31 1 1.6765 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7217 -1.2491 34 1 1.8937 -0.5137 3.9323 35 1 1.8934 1.0274 3.0423 36 1 0.4400 -0.0001 3.0423 37 1 4.3770 -1.3931 0.6308 38 1 4.3777 0.1485 1.5206 39 1 4.3773 -1.3926 2.4110 40 1 1.6636 -2.7114 3.5652 41 1 3.1172 -3.2254 2.6758 42 1 0.3794 -4.5507 2.4345 43 1 1.7088 -5.1562 3.4514 44 1 2.8606 -6.7601 -0.5640 45 1 3.3765 -9.3640 -1.2295 46 1 1.0219 -8.4897 -2.6858 47 1 0.4988 -10.1480 0.4971 48 1 0.3135 -6.6007 2.8637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8925530_10902662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:14:04 Heat of formation + Delta-G solvation = -185.752333 kcal Electronic energy + Delta-G solvation = -26619.497544 eV Core-core repulsion = 22712.785590 eV Total energy + Delta-G solvation = -3906.711954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.06204 -41.31305 -39.34471 -37.84951 -37.04534 -36.81671 -32.38709 -31.86744 -30.12267 -29.28922 -29.04930 -27.83064 -27.37064 -27.11144 -24.18019 -23.84335 -22.21095 -20.40709 -19.60002 -18.20410 -18.07207 -17.89583 -17.47892 -16.92777 -16.89929 -16.32811 -16.13082 -16.03610 -15.73454 -15.69042 -15.41874 -14.97328 -14.84295 -14.73699 -14.46900 -13.97182 -13.87322 -13.53130 -13.40240 -13.29241 -13.16204 -13.04248 -13.01870 -12.95030 -12.91140 -12.52683 -12.39097 -12.25172 -12.05285 -11.98382 -11.79461 -11.75248 -11.68728 -11.49805 -11.26492 -10.51450 -10.30540 -10.04404 -9.95751 -9.38162 -0.05582 0.10225 1.13786 1.46134 1.52439 1.53371 1.79522 1.89445 2.09966 2.15428 2.38699 2.48670 3.03486 3.41319 3.58687 3.76249 3.87495 3.96028 4.08579 4.11013 4.13045 4.13667 4.21190 4.29504 4.42685 4.47602 4.60036 4.67355 4.75952 4.79270 4.79835 4.81128 4.83150 4.83536 4.85304 4.88576 5.00586 5.06990 5.09736 5.10021 5.17963 5.20831 5.34611 5.41500 5.42979 5.48643 5.56148 5.61432 5.66204 6.29333 6.67935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.318 2.682 6 C -0.516 4.516 7 C -0.519 4.519 8 O -0.638 6.638 9 C 0.074 3.926 10 C 0.043 3.957 11 O -0.310 6.310 12 C 0.159 3.841 13 C -0.141 4.141 14 C -0.049 4.049 15 C -0.077 4.077 16 O -0.547 6.547 17 Si 0.980 3.020 18 H -0.254 1.254 19 H -0.269 1.269 20 H -0.257 1.257 21 C -0.208 4.208 22 C 0.132 3.868 23 F -0.141 7.141 24 C -0.245 4.245 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.145 0.855 45 H 0.136 0.864 46 H 0.391 0.609 47 H 0.141 0.859 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 1.425 2.759 3.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.427 4.427 3 C -0.198 4.198 4 C -0.193 4.193 5 Si 1.448 2.552 6 C -0.618 4.618 7 C -0.620 4.620 8 O -0.598 6.598 9 C -0.001 4.001 10 C -0.031 4.031 11 O -0.223 6.223 12 C 0.112 3.888 13 C -0.160 4.160 14 C -0.050 4.050 15 C -0.187 4.187 16 O -0.354 6.354 17 Si 0.804 3.196 18 H -0.178 1.178 19 H -0.194 1.194 20 H -0.181 1.181 21 C -0.227 4.227 22 C 0.113 3.887 23 F -0.120 7.120 24 C -0.264 4.264 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.163 0.837 45 H 0.154 0.846 46 H 0.240 0.760 47 H 0.158 0.842 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.929 0.547 2.457 2.683 hybrid contribution -0.615 0.750 0.418 1.056 sum 0.314 1.297 2.875 3.170 Atomic orbital electron populations 1.21532 0.94276 1.01649 1.01864 1.25961 1.00390 1.03048 1.13296 1.21600 1.01230 0.94693 1.02228 1.21525 1.00917 0.99896 0.96990 0.76157 0.62270 0.52658 0.64124 1.27059 1.06959 1.09849 1.17906 1.27127 1.25607 1.04861 1.04452 1.85401 1.79438 1.46716 1.48216 1.22378 1.00062 0.89321 0.88303 1.23386 0.99515 0.92537 0.87711 1.86187 1.64783 1.22867 1.48447 1.18823 0.92196 0.84350 0.93408 1.20457 1.03751 0.94131 0.97647 1.20015 0.94695 0.94020 0.96258 1.25060 1.06572 1.04682 0.82399 1.86507 1.30969 1.79397 1.38558 0.85238 0.79686 0.74608 0.80051 1.17803 1.19400 1.18130 1.21054 1.02419 1.01921 0.97273 1.17395 0.89920 0.91538 0.89877 1.91513 1.65352 1.83863 1.71270 1.21363 1.04378 0.95733 1.04959 0.91864 0.93504 0.92705 0.91901 0.93266 0.91628 0.92828 0.93450 0.92262 0.90546 0.90409 0.90978 0.91589 0.90470 0.90893 0.87660 0.90631 0.90283 0.88247 0.83706 0.84618 0.76018 0.84156 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 7.85 71.98 0.56 0.49 16 2 C -0.38 0.11 0.53 -10.80 -0.01 0.11 16 3 C -0.14 0.18 7.85 71.98 0.56 0.74 16 4 C -0.14 -0.23 7.85 71.98 0.56 0.34 16 5 Si 1.32 -4.16 8.45 68.60 0.58 -3.58 16 6 C -0.52 2.08 8.50 113.37 0.96 3.04 16 7 C -0.52 1.08 8.50 113.37 0.96 2.04 16 8 O -0.64 0.21 8.52 -144.34 -1.23 -1.02 16 9 C 0.07 -0.34 5.51 71.98 0.40 0.06 16 10 C 0.04 -0.14 5.12 71.98 0.37 0.23 16 11 O -0.31 -0.86 10.10 -87.80 -0.89 -1.75 16 12 C 0.16 0.46 6.69 22.50 0.15 0.61 16 13 C -0.14 -0.34 9.55 22.37 0.21 -0.13 16 14 C -0.05 -0.04 5.39 -19.88 -0.11 -0.15 16 15 C -0.08 0.14 2.82 71.24 0.20 0.34 16 16 O -0.55 0.21 12.77 -148.98 -1.90 -1.69 16 17 Si 0.98 -1.47 25.07 68.60 1.72 0.25 16 18 H -0.25 0.22 7.11 99.48 0.71 0.93 16 19 H -0.27 -0.40 7.11 99.48 0.71 0.31 16 20 H -0.26 0.05 7.11 99.48 0.71 0.76 16 21 C -0.21 -0.46 8.65 22.33 0.19 -0.27 16 22 C 0.13 0.51 7.30 22.36 0.16 0.67 16 23 F -0.14 -0.82 17.27 44.97 0.78 -0.05 16 24 C -0.24 -0.44 9.02 22.41 0.20 -0.24 16 25 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 26 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 28 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 29 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 31 H 0.05 0.16 7.97 -2.39 -0.02 0.14 16 32 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.06 0.03 7.79 -2.39 -0.02 0.01 16 34 H 0.08 -0.45 7.48 -2.39 -0.02 -0.46 16 35 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 36 H 0.07 -0.25 7.79 -2.38 -0.02 -0.26 16 37 H 0.06 -0.01 7.79 -2.39 -0.02 -0.03 16 38 H 0.08 -0.21 7.79 -2.39 -0.02 -0.23 16 39 H 0.07 -0.25 7.48 -2.39 -0.02 -0.27 16 40 H 0.11 -1.08 7.21 -2.38 -0.02 -1.09 16 41 H 0.08 -0.46 7.21 -2.39 -0.02 -0.48 16 42 H 0.08 -0.31 7.67 -2.39 -0.02 -0.33 16 43 H 0.10 -0.80 7.66 -2.39 -0.02 -0.82 16 44 H 0.15 0.27 8.06 -2.91 -0.02 0.25 16 45 H 0.14 -0.57 7.96 -2.39 -0.02 -0.59 16 46 H 0.39 -2.53 8.70 -74.06 -0.64 -3.17 16 47 H 0.14 0.03 4.87 -2.91 -0.01 0.01 16 48 H 0.16 -0.37 6.30 -2.91 -0.02 -0.39 16 Total: 0.00 -11.85 387.87 5.50 -6.34 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: 1.05 Total: -6.38 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.40 Total: 7.87 kcal Atomic # 8 Polarization: -0.44 SS G_CDS: -4.02 Total: -4.46 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.78 Total: -0.05 kcal Atomic # 14 Polarization: -5.63 SS G_CDS: 2.30 Total: -3.33 kcal Total: -11.85 5.50 -6.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8925530_10902662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.409 kcal (2) G-P(sol) polarization free energy of solvation -11.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds