Wall clock time and date at job start Mon Mar 8 2021 08:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86295 * 109.47098 * 2 1 4 4 C 1.86303 * 109.47029 * 239.99878 * 2 1 3 5 5 C 1.86800 * 109.47147 * 120.00301 * 2 1 3 6 6 C 1.38236 * 120.00055 * 90.00082 * 5 2 1 7 7 C 1.38241 * 119.99884 * 180.02562 * 6 5 2 8 8 C 1.38235 * 119.99840 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99915 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47456 * 89.99914 * 9 8 7 11 11 C 1.35891 * 116.99973 * 180.02562 * 10 9 8 12 12 C 1.38727 * 120.04183 * 180.02562 * 11 10 9 13 13 C 1.38180 * 119.99349 * 179.97438 * 12 11 10 14 14 C 1.50700 * 119.95639 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.47093 * 299.97695 * 14 13 12 16 16 Si 1.86305 * 109.46953 * 179.97438 * 14 13 12 17 17 H 1.48499 * 109.47096 * 299.99769 * 16 14 13 18 18 H 1.48493 * 109.47203 * 59.99727 * 16 14 13 19 19 H 1.48501 * 109.47277 * 180.02562 * 16 14 13 20 20 C 1.38209 * 120.08200 * 0.02562 * 13 12 11 21 21 C 1.38512 * 120.08309 * 359.97438 * 20 13 12 22 22 F 1.35099 * 119.99575 * 180.02562 * 21 20 13 23 23 C 1.38345 * 120.00832 * 359.97438 * 21 20 13 24 24 C 1.38240 * 120.00440 * 0.25474 * 8 7 6 25 25 C 1.38235 * 119.99669 * 270.02143 * 5 2 1 26 26 H 1.09000 * 109.47041 * 299.99768 * 1 2 3 27 27 H 1.08995 * 109.47498 * 60.00313 * 1 2 3 28 28 H 1.09008 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47215 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47408 * 299.99988 * 3 2 1 31 31 H 1.09000 * 109.46985 * 60.00197 * 3 2 1 32 32 H 1.08995 * 109.47303 * 300.00090 * 4 2 1 33 33 H 1.09007 * 109.46906 * 60.00285 * 4 2 1 34 34 H 1.09003 * 109.47051 * 179.97438 * 4 2 1 35 35 H 1.07988 * 120.00295 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00120 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.46686 * 329.99532 * 9 8 7 38 38 H 1.08999 * 109.46924 * 209.99909 * 9 8 7 39 39 H 1.07999 * 120.00544 * 0.02562 * 12 11 10 40 40 H 1.08999 * 109.47763 * 59.98041 * 14 13 12 41 41 H 0.96711 * 113.99549 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.95525 * 179.97438 * 20 13 12 43 43 H 1.08003 * 120.04109 * 179.75104 * 23 21 20 44 44 H 1.07998 * 120.00324 * 179.72894 * 24 8 7 45 45 H 1.07995 * 120.00406 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5252 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9080 -2.8947 5.0135 10 8 5.3369 -2.8958 5.0142 11 6 5.9529 -3.5020 6.0629 12 6 7.3381 -3.5394 6.1277 13 6 7.9634 -4.1557 7.1948 14 6 9.4682 -4.1953 7.2645 15 8 9.9802 -4.8821 6.1207 16 14 9.9948 -5.0884 8.8124 17 1 9.4628 -4.3746 10.0010 18 1 9.4636 -6.4749 8.7889 19 1 11.4777 -5.1270 8.8816 20 6 7.2104 -4.7356 8.1981 21 6 5.8270 -4.7002 8.1368 22 9 5.0927 -5.2672 9.1188 23 6 5.1973 -4.0832 7.0706 24 6 3.1718 -0.8223 3.8184 25 6 2.7156 -0.1698 2.6882 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4112 34 1 3.5740 -0.8779 -1.5214 35 1 2.5357 -2.7987 0.5825 36 1 3.3560 -3.9597 2.5931 37 1 3.5438 -3.9220 5.0134 38 1 3.5446 -2.3805 5.9032 39 1 7.9278 -3.0863 5.3445 40 1 9.8582 -3.1776 7.2819 41 1 10.9449 -4.9460 6.0995 42 1 7.7012 -5.2171 9.0310 43 1 4.1187 -4.0588 7.0202 44 1 3.3476 -0.2676 4.7282 45 1 2.5357 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_8925530_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:43:38 Heat of formation + Delta-G solvation = -109.724033 kcal Electronic energy + Delta-G solvation = -25091.522496 eV Core-core repulsion = 21304.960245 eV Total energy + Delta-G solvation = -3786.562251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90293 -41.36762 -40.07853 -38.89411 -37.28353 -33.25465 -32.43690 -31.90948 -30.94010 -29.58750 -28.46051 -28.43234 -27.70122 -26.62843 -23.76784 -23.51078 -22.79883 -21.79169 -19.28122 -18.66467 -18.20050 -17.61310 -17.22970 -17.16583 -17.08197 -16.50398 -16.10362 -15.73478 -15.50782 -15.42350 -15.19598 -14.77299 -14.38961 -14.30276 -14.17056 -14.13465 -13.88026 -13.84614 -13.48581 -13.38777 -13.27781 -13.27622 -13.16336 -13.11933 -12.98345 -12.46337 -12.35086 -12.12716 -11.97051 -11.88043 -11.79007 -11.06466 -10.92399 -10.85899 -10.49651 -9.87650 -9.80468 -9.72011 -9.32707 0.00433 0.13440 0.18124 0.52249 1.05314 1.38726 1.45887 1.67918 1.82921 1.83549 1.87278 2.18943 2.41872 2.52319 2.96028 3.06027 3.35477 3.60707 3.72714 3.75194 3.86463 3.91759 4.03872 4.09408 4.18524 4.19293 4.23571 4.45867 4.48386 4.64916 4.68473 4.69783 4.73671 4.74049 4.74672 4.74943 4.92016 4.93402 4.97270 5.09431 5.12741 5.25740 5.37502 5.43951 5.48387 5.51912 5.57575 5.59096 5.59963 6.08365 6.26401 6.49320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.090 4.090 9 C 0.098 3.902 10 O -0.299 6.299 11 C 0.163 3.837 12 C -0.131 4.131 13 C -0.007 4.007 14 C -0.083 4.083 15 O -0.542 6.542 16 Si 0.945 3.055 17 H -0.248 1.248 18 H -0.245 1.245 19 H -0.253 1.253 20 C -0.199 4.199 21 C 0.149 3.851 22 F -0.132 7.132 23 C -0.245 4.245 24 C -0.106 4.106 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.085 0.915 41 H 0.384 0.616 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 2.071 -1.382 2.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.090 4.090 9 C 0.023 3.977 10 O -0.213 6.213 11 C 0.117 3.883 12 C -0.150 4.150 13 C -0.007 4.007 14 C -0.193 4.193 15 O -0.348 6.348 16 Si 0.767 3.233 17 H -0.171 1.171 18 H -0.168 1.168 19 H -0.177 1.177 20 C -0.218 4.218 21 C 0.130 3.870 22 F -0.110 7.110 23 C -0.264 4.264 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.103 0.897 41 H 0.231 0.769 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.092 1.631 -0.839 1.836 hybrid contribution 0.124 -0.042 0.278 0.307 sum 0.216 1.589 -0.561 1.699 Atomic orbital electron populations 1.26125 1.20430 1.04592 1.04517 0.78179 0.66839 0.66128 0.63672 1.26136 1.06511 1.18533 1.04578 1.26138 1.06516 1.08050 1.15064 1.27494 1.02929 0.99519 1.10234 1.21085 0.97461 0.94676 0.97718 1.21161 0.98679 0.99945 0.92564 1.19420 1.01055 0.94193 0.94318 1.21720 0.78386 1.00685 0.96905 1.86216 1.21199 1.72362 1.41484 1.18670 0.91899 0.91427 0.86305 1.20292 0.90976 1.03733 0.99952 1.18793 0.93649 0.95143 0.93162 1.24728 0.92789 1.01772 0.99985 1.86510 1.26520 1.78468 1.43283 0.85744 0.80426 0.81124 0.75983 1.17135 1.16837 1.17709 1.20837 0.92442 1.06323 1.02152 1.17120 0.88620 0.95078 0.86190 1.91539 1.77083 1.82377 1.60047 1.21210 1.01396 1.07254 0.96563 1.21154 0.98765 0.93512 0.98951 1.21083 0.97510 0.99768 0.92604 0.91166 0.90999 0.91163 0.91018 0.90922 0.91173 0.91162 0.90929 0.91014 0.85837 0.86060 0.90737 0.90730 0.83928 0.89744 0.76868 0.84748 0.83872 0.86079 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.74 8.65 101.05 0.87 1.61 16 2 Si 1.06 -2.74 12.32 -169.99 -2.09 -4.84 16 3 C -0.45 0.83 8.53 101.05 0.86 1.69 16 4 C -0.45 0.81 8.53 101.05 0.86 1.67 16 5 C -0.36 0.08 4.59 -39.58 -0.18 -0.10 16 6 C -0.09 -0.03 9.29 -39.58 -0.37 -0.40 16 7 C -0.11 -0.11 9.70 -39.58 -0.38 -0.50 16 8 C -0.09 -0.12 5.51 -104.62 -0.58 -0.69 16 9 C 0.10 0.04 4.87 36.01 0.18 0.22 16 10 O -0.30 -0.75 10.12 -19.40 -0.20 -0.95 16 11 C 0.16 0.38 6.69 -39.23 -0.26 0.12 16 12 C -0.13 -0.29 9.55 -39.42 -0.38 -0.66 16 13 C -0.01 -0.01 5.42 -104.65 -0.57 -0.58 16 14 C -0.08 0.05 2.81 36.01 0.10 0.15 16 15 O -0.54 0.08 12.74 -35.23 -0.45 -0.37 16 16 Si 0.95 -0.63 25.07 -169.99 -4.26 -4.89 16 17 H -0.25 0.01 7.11 56.52 0.40 0.41 16 18 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 19 H -0.25 0.20 7.11 56.52 0.40 0.60 16 20 C -0.20 -0.43 8.65 -39.49 -0.34 -0.77 16 21 C 0.15 0.40 7.30 -39.44 -0.29 0.11 16 22 F -0.13 -0.45 17.27 2.25 0.04 -0.41 16 23 C -0.24 -0.45 9.02 -39.37 -0.35 -0.80 16 24 C -0.11 -0.10 9.70 -39.58 -0.38 -0.48 16 25 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 32 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.12 -0.19 7.43 -52.49 -0.39 -0.58 16 36 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 37 H 0.07 -0.05 7.60 -51.93 -0.39 -0.45 16 38 H 0.07 -0.07 7.61 -51.93 -0.40 -0.46 16 39 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 41 H 0.38 -1.80 8.74 45.56 0.40 -1.40 16 42 H 0.14 0.14 4.87 -52.49 -0.26 -0.12 16 43 H 0.14 0.00 6.30 -52.48 -0.33 -0.33 16 44 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 45 H 0.12 -0.21 7.43 -52.49 -0.39 -0.60 16 LS Contribution 380.16 15.07 5.73 5.73 Total: 0.00 -6.10 380.16 -8.74 -14.83 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -5.93 Total: -9.29 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.58 Total: 0.19 kcal Atomic # 8 Polarization: -0.68 SS G_CDS: -0.65 Total: -1.32 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: -6.36 Total: -9.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -6.10 -8.74 -14.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8925530_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.890 kcal (2) G-P(sol) polarization free energy of solvation -6.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds