Wall clock time and date at job start Mon Mar 8 2021 08:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86295 * 109.47098 * 2 1 4 4 C 1.86303 * 109.47029 * 239.99878 * 2 1 3 5 5 C 1.86800 * 109.47147 * 120.00301 * 2 1 3 6 6 C 1.38236 * 120.00055 * 90.00082 * 5 2 1 7 7 C 1.38241 * 119.99884 * 180.02562 * 6 5 2 8 8 C 1.38235 * 119.99840 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99915 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47456 * 89.99914 * 9 8 7 11 11 C 1.35891 * 116.99973 * 180.02562 * 10 9 8 12 12 C 1.38727 * 120.04183 * 180.02562 * 11 10 9 13 13 C 1.38180 * 119.99349 * 179.97438 * 12 11 10 14 14 C 1.50700 * 119.95639 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.47093 * 299.97695 * 14 13 12 16 16 Si 1.86305 * 109.46953 * 179.97438 * 14 13 12 17 17 H 1.48499 * 109.47096 * 299.99769 * 16 14 13 18 18 H 1.48493 * 109.47203 * 59.99727 * 16 14 13 19 19 H 1.48501 * 109.47277 * 180.02562 * 16 14 13 20 20 C 1.38209 * 120.08200 * 0.02562 * 13 12 11 21 21 C 1.38512 * 120.08309 * 359.97438 * 20 13 12 22 22 F 1.35099 * 119.99575 * 180.02562 * 21 20 13 23 23 C 1.38345 * 120.00832 * 359.97438 * 21 20 13 24 24 C 1.38240 * 120.00440 * 0.25474 * 8 7 6 25 25 C 1.38235 * 119.99669 * 270.02143 * 5 2 1 26 26 H 1.09000 * 109.47041 * 299.99768 * 1 2 3 27 27 H 1.08995 * 109.47498 * 60.00313 * 1 2 3 28 28 H 1.09008 * 109.47398 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47215 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47408 * 299.99988 * 3 2 1 31 31 H 1.09000 * 109.46985 * 60.00197 * 3 2 1 32 32 H 1.08995 * 109.47303 * 300.00090 * 4 2 1 33 33 H 1.09007 * 109.46906 * 60.00285 * 4 2 1 34 34 H 1.09003 * 109.47051 * 179.97438 * 4 2 1 35 35 H 1.07988 * 120.00295 * 359.97438 * 6 5 2 36 36 H 1.08000 * 120.00120 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.46686 * 329.99532 * 9 8 7 38 38 H 1.08999 * 109.46924 * 209.99909 * 9 8 7 39 39 H 1.07999 * 120.00544 * 0.02562 * 12 11 10 40 40 H 1.08999 * 109.47763 * 59.98041 * 14 13 12 41 41 H 0.96711 * 113.99549 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.95525 * 179.97438 * 20 13 12 43 43 H 1.08003 * 120.04109 * 179.75104 * 23 21 20 44 44 H 1.07998 * 120.00324 * 179.72894 * 24 8 7 45 45 H 1.07995 * 120.00406 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5252 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4067 -2.1841 3.7827 9 6 3.9080 -2.8947 5.0135 10 8 5.3369 -2.8958 5.0142 11 6 5.9529 -3.5020 6.0629 12 6 7.3381 -3.5394 6.1277 13 6 7.9634 -4.1557 7.1948 14 6 9.4682 -4.1953 7.2645 15 8 9.9802 -4.8821 6.1207 16 14 9.9948 -5.0884 8.8124 17 1 9.4628 -4.3746 10.0010 18 1 9.4636 -6.4749 8.7889 19 1 11.4777 -5.1270 8.8816 20 6 7.2104 -4.7356 8.1981 21 6 5.8270 -4.7002 8.1368 22 9 5.0927 -5.2672 9.1188 23 6 5.1973 -4.0832 7.0706 24 6 3.1718 -0.8223 3.8184 25 6 2.7156 -0.1698 2.6882 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5740 1.7564 0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4112 34 1 3.5740 -0.8779 -1.5214 35 1 2.5357 -2.7987 0.5825 36 1 3.3560 -3.9597 2.5931 37 1 3.5438 -3.9220 5.0134 38 1 3.5446 -2.3805 5.9032 39 1 7.9278 -3.0863 5.3445 40 1 9.8582 -3.1776 7.2819 41 1 10.9449 -4.9460 6.0995 42 1 7.7012 -5.2171 9.0310 43 1 4.1187 -4.0588 7.0202 44 1 3.3476 -0.2676 4.7282 45 1 2.5357 0.8947 2.7150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_8925530_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:43:37 Heat of formation + Delta-G solvation = -100.412145 kcal Electronic energy + Delta-G solvation = -25091.118702 eV Core-core repulsion = 21304.960245 eV Total energy + Delta-G solvation = -3786.158457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.11750 -41.46585 -40.08382 -38.93548 -37.27474 -33.26397 -32.52537 -31.88981 -31.04631 -29.43061 -28.29132 -28.26802 -27.72769 -26.63382 -23.90941 -23.49695 -22.84615 -21.82219 -19.38620 -18.64194 -18.23896 -17.69784 -17.29018 -17.25409 -17.16825 -16.67550 -16.08874 -15.75298 -15.54940 -15.44251 -15.28891 -14.76615 -14.34369 -14.24836 -14.05927 -14.03986 -13.80234 -13.74049 -13.46161 -13.43780 -13.23828 -13.14024 -13.10884 -12.99146 -12.96423 -12.47667 -12.39223 -12.15987 -11.96181 -11.87376 -11.80274 -10.92533 -10.78230 -10.75553 -10.45372 -9.96703 -9.81496 -9.70356 -9.47161 -0.11539 0.02759 0.13587 0.51289 1.10660 1.44126 1.49232 1.83241 1.88037 1.95020 2.02799 2.22652 2.30410 2.66839 2.90960 3.02180 3.31130 3.60847 3.70634 3.77891 3.79353 3.85389 4.01677 4.10629 4.11712 4.21704 4.26180 4.51671 4.52644 4.70404 4.79234 4.80043 4.84916 4.85069 4.88949 4.89684 4.90157 4.90983 4.97774 4.99109 5.13553 5.15244 5.38690 5.46083 5.55807 5.58718 5.59563 5.68194 5.71043 6.10989 6.16480 6.80184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.105 4.105 9 C 0.095 3.905 10 O -0.312 6.312 11 C 0.157 3.843 12 C -0.139 4.139 13 C -0.012 4.012 14 C -0.081 4.081 15 O -0.559 6.559 16 Si 0.974 3.026 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.246 1.246 20 C -0.208 4.208 21 C 0.134 3.866 22 F -0.139 7.139 23 C -0.244 4.244 24 C -0.121 4.121 25 C -0.104 4.104 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.402 0.598 42 H 0.141 0.859 43 H 0.158 0.842 44 H 0.129 0.871 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 2.703 -1.919 3.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.140 4.140 8 C -0.105 4.105 9 C 0.021 3.979 10 O -0.226 6.226 11 C 0.111 3.889 12 C -0.157 4.157 13 C -0.013 4.013 14 C -0.191 4.191 15 O -0.369 6.369 16 Si 0.798 3.202 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.169 1.169 20 C -0.226 4.226 21 C 0.115 3.885 22 F -0.118 7.118 23 C -0.264 4.264 24 C -0.139 4.139 25 C -0.121 4.121 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.165 0.835 40 H 0.127 0.873 41 H 0.254 0.746 42 H 0.158 0.842 43 H 0.175 0.825 44 H 0.147 0.853 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.343 2.262 -1.368 2.666 hybrid contribution 0.050 -0.248 0.421 0.492 sum 0.393 2.014 -0.947 2.260 Atomic orbital electron populations 1.26280 1.21497 1.04479 1.04610 0.77156 0.65207 0.64600 0.61537 1.26279 1.06385 1.19383 1.04909 1.26291 1.06376 1.08505 1.15854 1.28074 1.02286 0.99578 1.11235 1.21395 0.97358 0.95251 0.98159 1.21392 0.99154 1.00496 0.92980 1.19587 1.01559 0.94585 0.94736 1.21846 0.77479 1.01368 0.97197 1.86196 1.22296 1.72455 1.41640 1.18771 0.92131 0.91607 0.86433 1.20457 0.91125 1.03902 1.00265 1.19079 0.95039 0.94500 0.92669 1.24748 0.91352 1.03178 0.99784 1.86461 1.28501 1.78609 1.43331 0.85338 0.80365 0.79058 0.75403 1.18217 1.19805 1.16945 1.21020 0.92464 1.06481 1.02659 1.17311 0.88968 0.95759 0.86478 1.91515 1.77276 1.82612 1.60380 1.21329 1.02179 1.06765 0.96089 1.21398 0.99080 0.93673 0.99731 1.21406 0.97328 1.00795 0.92596 0.91348 0.90644 0.91400 0.91364 0.90619 0.90865 0.90935 0.90624 0.91389 0.84281 0.85500 0.89861 0.89590 0.83548 0.87289 0.74643 0.84182 0.82465 0.85273 0.84166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.75 8.65 113.37 0.98 2.73 16 2 Si 1.13 -6.47 12.32 68.60 0.85 -5.62 16 3 C -0.46 2.00 8.53 113.37 0.97 2.96 16 4 C -0.46 1.90 8.53 113.37 0.97 2.87 16 5 C -0.37 0.18 4.59 22.27 0.10 0.29 16 6 C -0.10 -0.10 9.29 22.27 0.21 0.11 16 7 C -0.12 -0.35 9.70 22.27 0.22 -0.13 16 8 C -0.10 -0.35 5.51 -19.86 -0.11 -0.46 16 9 C 0.10 0.14 4.87 71.24 0.35 0.49 16 10 O -0.31 -1.80 10.12 -92.32 -0.93 -2.74 16 11 C 0.16 0.84 6.69 22.50 0.15 1.00 16 12 C -0.14 -0.67 9.55 22.37 0.21 -0.46 16 13 C -0.01 -0.05 5.42 -19.89 -0.11 -0.15 16 14 C -0.08 0.13 2.81 71.24 0.20 0.33 16 15 O -0.56 0.46 12.74 -148.98 -1.90 -1.44 16 16 Si 0.97 -1.34 25.07 68.60 1.72 0.38 16 17 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 18 H -0.27 -0.84 7.11 99.48 0.71 -0.14 16 19 H -0.25 0.64 7.11 99.48 0.71 1.35 16 20 C -0.21 -1.06 8.65 22.33 0.19 -0.87 16 21 C 0.13 0.85 7.30 22.36 0.16 1.01 16 22 F -0.14 -1.09 17.27 44.97 0.78 -0.31 16 23 C -0.24 -1.06 9.02 22.41 0.20 -0.86 16 24 C -0.12 -0.29 9.70 22.27 0.22 -0.08 16 25 C -0.10 -0.06 9.29 22.27 0.21 0.14 16 26 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 27 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 29 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.37 16 31 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 32 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 33 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.14 -0.45 7.43 -2.92 -0.02 -0.47 16 36 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.08 -0.07 7.60 -2.39 -0.02 -0.08 16 38 H 0.09 -0.11 7.61 -2.39 -0.02 -0.13 16 39 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 40 H 0.11 -0.71 7.96 -2.39 -0.02 -0.73 16 41 H 0.40 -4.14 8.74 -74.05 -0.65 -4.79 16 42 H 0.14 0.43 4.87 -2.91 -0.01 0.41 16 43 H 0.16 0.07 6.30 -2.91 -0.02 0.06 16 44 H 0.13 -0.04 8.06 -2.91 -0.02 -0.07 16 45 H 0.14 -0.53 7.43 -2.91 -0.02 -0.55 16 Total: 0.00 -14.21 380.16 6.73 -7.48 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: 1.10 Total: -6.67 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.12 Total: 8.92 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: -2.83 Total: -4.18 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.78 Total: -0.31 kcal Atomic # 14 Polarization: -7.81 SS G_CDS: 2.56 Total: -5.24 kcal Total: -14.21 6.73 -7.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_8925530_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.928 kcal (2) G-P(sol) polarization free energy of solvation -14.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds