Wall clock time and date at job start Mon Mar 8 2021 08:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 113.99913 * 2 1 4 4 H 1.08999 * 112.84463 * 341.19060 * 3 2 1 5 5 C 1.53775 * 113.61797 * 112.50151 * 3 2 1 6 6 C 1.53772 * 87.08350 * 139.97735 * 5 3 2 7 7 H 1.09008 * 113.68698 * 89.12498 * 6 5 3 8 8 N 1.46502 * 113.61766 * 220.01521 * 6 5 3 9 9 C 1.46496 * 119.99568 * 37.50004 * 8 6 5 10 10 S 1.65596 * 119.99914 * 217.49923 * 8 6 5 11 11 O 1.42099 * 106.40583 * 336.45938 * 10 8 6 12 12 O 1.42111 * 106.39920 * 203.54049 * 10 8 6 13 13 C 1.76199 * 107.21852 * 90.00533 * 10 8 6 14 14 C 1.33389 * 125.20554 * 150.00100 * 13 10 8 15 15 C 1.50696 * 122.53722 * 359.97438 * 14 13 10 16 16 O 1.42903 * 109.47131 * 284.99774 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 165.00315 * 15 14 13 18 18 C 1.38421 * 114.92082 * 180.24453 * 14 13 10 19 19 C 1.33388 * 114.91873 * 359.48975 * 18 14 13 20 20 S 1.75879 * 125.20072 * 329.96672 * 13 10 8 21 21 C 1.53773 * 87.08365 * 334.56921 * 6 5 3 22 22 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47687 * 300.00665 * 1 2 3 24 24 H 1.09003 * 109.47088 * 60.00730 * 1 2 3 25 25 H 1.09003 * 113.61231 * 25.42807 * 5 3 2 26 26 H 1.08999 * 113.61215 * 254.52959 * 5 3 2 27 27 H 1.08997 * 109.46950 * 269.99783 * 9 8 6 28 28 H 1.09003 * 109.47211 * 30.00064 * 9 8 6 29 29 H 1.08998 * 109.47163 * 149.99824 * 9 8 6 30 30 H 1.08999 * 109.47358 * 45.00134 * 15 14 13 31 31 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 32 32 H 1.48499 * 109.99670 * 58.67633 * 17 15 14 33 33 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 34 34 H 1.07998 * 122.54067 * 179.73079 * 18 14 13 35 35 H 1.08006 * 125.20385 * 180.20534 * 19 18 14 36 36 H 1.09001 * 113.61851 * 139.97894 * 21 6 5 37 37 H 1.09003 * 113.61615 * 270.80029 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 -0.3239 5 6 2.7533 1.6491 1.3017 6 6 3.8226 2.3182 0.4222 7 1 3.6234 3.3695 0.2142 8 7 5.1934 2.0788 0.8804 9 6 5.5625 0.7747 1.4364 10 16 6.3254 3.2823 0.7697 11 8 5.8789 4.1604 -0.2543 12 8 7.5928 2.6399 0.7447 13 6 6.2616 4.1982 2.2736 14 6 7.2936 4.8326 2.8320 15 6 8.6706 4.8357 2.2198 16 8 9.2887 3.5647 2.4313 17 14 9.7014 6.1676 3.0163 18 6 7.0052 5.4830 4.0193 19 6 5.7365 5.3857 4.4197 20 16 4.8272 4.4166 3.2675 21 6 3.3755 1.3720 -0.7045 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 3.1165 0.7742 1.8410 26 1 2.2139 2.3479 1.9410 27 1 5.3973 0.7792 2.5138 28 1 4.9504 -0.0021 0.9781 29 1 6.6145 0.5767 1.2309 30 1 8.5922 5.0280 1.1498 31 1 9.3912 3.3273 3.3631 32 1 9.7895 5.9343 4.4802 33 1 11.0621 6.1805 2.4217 34 1 7.7500 6.0311 4.5773 35 1 5.3308 5.8301 5.3166 36 1 3.3384 1.8471 -1.6848 37 1 3.9098 0.4219 -0.7146 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10122446_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:56 Heat of formation + Delta-G solvation = -62.087041 kcal Electronic energy + Delta-G solvation = -23936.978981 eV Core-core repulsion = 20323.034362 eV Total energy + Delta-G solvation = -3613.944618 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83772 -40.06874 -38.10620 -37.83291 -37.08111 -36.72170 -34.72555 -31.46783 -28.34055 -28.01376 -27.46818 -26.74993 -24.50339 -24.36934 -21.40926 -20.67153 -19.77333 -19.68016 -18.54591 -18.34947 -17.63206 -17.06299 -16.74284 -16.32636 -16.32150 -16.04133 -15.86103 -15.45858 -15.27299 -15.07454 -14.90349 -14.24794 -14.06769 -13.67414 -13.65398 -13.50928 -13.30059 -13.03964 -12.93516 -12.81359 -12.66196 -12.60734 -12.54905 -12.19956 -12.18291 -11.87956 -11.78915 -11.59906 -10.63445 -10.50828 -10.44860 -10.14660 -9.70920 -5.02302 -0.75307 -0.58949 0.22695 0.57559 1.16344 1.18902 1.50942 1.83906 1.91940 2.67571 2.81354 3.31167 3.36370 3.41072 3.44094 3.56582 3.71605 3.72434 3.88558 3.92509 4.06032 4.17934 4.30735 4.38560 4.41620 4.48836 4.59447 4.60935 4.66514 4.72218 4.73554 4.80425 4.81738 4.89834 4.97085 5.00427 5.24505 5.45484 6.20201 6.44168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.063 3.937 4 H 0.093 0.907 5 C -0.164 4.164 6 C 0.120 3.880 7 H 0.124 0.876 8 N -0.985 5.985 9 C 0.080 3.920 10 S 2.703 3.297 11 O -0.947 6.947 12 O -0.916 6.916 13 C -0.766 4.766 14 C 0.003 3.997 15 C -0.086 4.086 16 O -0.491 6.491 17 Si 0.699 3.301 18 C -0.164 4.164 19 C -0.163 4.163 20 S 0.206 5.794 21 C -0.147 4.147 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.370 0.630 32 H -0.254 1.254 33 H -0.248 1.248 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.083 0.917 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 1.752 4.174 6.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.004 3.996 4 H 0.111 0.889 5 C -0.203 4.203 6 C 0.014 3.986 7 H 0.141 0.859 8 N -0.823 5.823 9 C -0.065 4.065 10 S 2.788 3.212 11 O -0.937 6.937 12 O -0.906 6.906 13 C -0.966 4.966 14 C -0.015 4.015 15 C -0.198 4.198 16 O -0.296 6.296 17 Si 0.598 3.402 18 C -0.194 4.194 19 C -0.300 4.300 20 S 0.473 5.527 21 C -0.186 4.186 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.217 0.783 32 H -0.178 1.178 33 H -0.173 1.173 34 H 0.173 0.827 35 H 0.196 0.804 36 H 0.102 0.898 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.983 1.444 3.247 6.120 hybrid contribution 0.818 -0.144 1.506 1.720 sum -4.165 1.299 4.754 6.453 Atomic orbital electron populations 1.22826 0.80815 1.03045 1.00098 1.87952 1.19930 1.26831 1.94539 1.23485 0.93880 0.85869 0.96327 0.88870 1.23976 0.96758 1.01776 0.97794 1.22232 0.79921 1.00366 0.96092 0.85873 1.57388 1.22751 1.25585 1.76605 1.21663 1.02631 0.83709 0.98503 1.02067 0.73285 0.72926 0.72881 1.93625 1.81947 1.65657 1.52465 1.93706 1.37311 1.73961 1.85618 1.35880 1.04369 1.26275 1.30036 1.19068 0.95683 0.93042 0.93671 1.25137 0.92564 0.95839 1.06250 1.86922 1.80289 1.32590 1.29796 0.94880 0.81048 0.85182 0.79058 1.20335 0.97573 1.04094 0.97403 1.26113 0.97556 1.02618 1.03752 1.84054 1.08291 1.46687 1.13702 1.23695 0.95214 1.01005 0.98689 0.89509 0.93905 0.93796 0.87958 0.90382 0.92403 0.89745 0.89285 0.86637 0.78321 1.17837 1.17271 0.82686 0.80442 0.89819 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.06 16 2 O -0.37 -0.36 10.71 -35.23 -0.38 -0.74 16 3 C 0.06 -0.05 4.31 -25.92 -0.11 -0.16 16 4 H 0.09 -0.21 7.87 -51.93 -0.41 -0.62 16 5 C -0.16 0.26 7.34 -25.93 -0.19 0.07 16 6 C 0.12 -0.05 4.13 -67.13 -0.28 -0.33 16 7 H 0.12 -0.11 7.41 -51.92 -0.38 -0.49 16 8 N -0.99 -0.49 3.39 -113.75 -0.39 -0.87 16 9 C 0.08 -0.07 9.26 59.84 0.55 0.48 16 10 S 2.70 8.48 5.36 -107.50 -0.58 7.90 16 11 O -0.95 -5.23 16.83 -57.17 -0.96 -6.19 16 12 O -0.92 -5.03 13.71 -65.82 -0.90 -5.93 16 13 C -0.77 -1.26 6.48 29.04 0.19 -1.07 16 14 C 0.00 0.00 5.13 -106.25 -0.54 -0.54 16 15 C -0.09 -0.14 1.87 36.00 0.07 -0.07 16 16 O -0.49 -1.45 11.04 -56.06 -0.62 -2.06 16 17 Si 0.70 -0.46 30.47 -169.99 -5.18 -5.64 16 18 C -0.16 0.14 8.74 -41.21 -0.36 -0.22 16 19 C -0.16 0.28 11.23 29.04 0.33 0.60 16 20 S 0.21 -0.16 23.34 -107.50 -2.51 -2.67 16 21 C -0.15 0.05 7.45 -25.92 -0.19 -0.15 16 22 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 23 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 24 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.10 -0.14 6.72 -51.93 -0.35 -0.49 16 26 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 27 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 28 H 0.08 -0.16 6.34 -51.93 -0.33 -0.49 16 29 H 0.09 -0.01 7.02 -51.93 -0.36 -0.38 16 30 H 0.12 0.23 7.60 -51.93 -0.39 -0.17 16 31 H 0.37 -0.29 8.70 45.56 0.40 0.11 16 32 H -0.25 -0.01 6.80 56.52 0.38 0.38 16 33 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 34 H 0.16 -0.41 5.54 -52.49 -0.29 -0.70 16 35 H 0.18 -0.80 8.06 -52.48 -0.42 -1.22 16 36 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.10 0.00 6.92 -51.93 -0.36 -0.36 16 LS Contribution 326.58 15.07 4.92 4.92 Total: 0.00 -8.83 326.58 -10.70 -19.53 By element: Atomic # 1 Polarization: -3.25 SS G_CDS: -4.66 Total: -7.90 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 0.55 Total: -0.33 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -0.39 Total: -0.87 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -2.86 Total: -14.93 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: -5.18 Total: -5.64 kcal Atomic # 16 Polarization: 8.32 SS G_CDS: -3.09 Total: 5.23 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -8.83 -10.70 -19.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10122446_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.561 kcal (2) G-P(sol) polarization free energy of solvation -8.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds