Wall clock time and date at job start Mon Mar 8 2021 08:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42908 * 113.99913 * 2 1 4 4 H 1.08999 * 112.84463 * 341.19060 * 3 2 1 5 5 C 1.53775 * 113.61797 * 112.50151 * 3 2 1 6 6 C 1.53772 * 87.08350 * 139.97735 * 5 3 2 7 7 H 1.09008 * 113.68698 * 89.12498 * 6 5 3 8 8 N 1.46502 * 113.61766 * 220.01521 * 6 5 3 9 9 C 1.46496 * 119.99568 * 37.50004 * 8 6 5 10 10 S 1.65596 * 119.99914 * 217.49923 * 8 6 5 11 11 O 1.42099 * 106.40583 * 336.45938 * 10 8 6 12 12 O 1.42111 * 106.39920 * 203.54049 * 10 8 6 13 13 C 1.76199 * 107.21852 * 90.00533 * 10 8 6 14 14 C 1.33389 * 125.20554 * 150.00100 * 13 10 8 15 15 C 1.50696 * 122.53722 * 359.97438 * 14 13 10 16 16 O 1.42903 * 109.47131 * 284.99774 * 15 14 13 17 17 Si 1.86305 * 109.47185 * 165.00315 * 15 14 13 18 18 C 1.38421 * 114.92082 * 180.24453 * 14 13 10 19 19 C 1.33388 * 114.91873 * 359.48975 * 18 14 13 20 20 S 1.75879 * 125.20072 * 329.96672 * 13 10 8 21 21 C 1.53773 * 87.08365 * 334.56921 * 6 5 3 22 22 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47687 * 300.00665 * 1 2 3 24 24 H 1.09003 * 109.47088 * 60.00730 * 1 2 3 25 25 H 1.09003 * 113.61231 * 25.42807 * 5 3 2 26 26 H 1.08999 * 113.61215 * 254.52959 * 5 3 2 27 27 H 1.08997 * 109.46950 * 269.99783 * 9 8 6 28 28 H 1.09003 * 109.47211 * 30.00064 * 9 8 6 29 29 H 1.08998 * 109.47163 * 149.99824 * 9 8 6 30 30 H 1.08999 * 109.47358 * 45.00134 * 15 14 13 31 31 H 0.96700 * 114.00311 * 300.00591 * 16 15 14 32 32 H 1.48499 * 109.99670 * 58.67633 * 17 15 14 33 33 H 1.48497 * 110.00233 * 179.97438 * 17 15 14 34 34 H 1.07998 * 122.54067 * 179.73079 * 18 14 13 35 35 H 1.08006 * 125.20385 * 180.20534 * 19 18 14 36 36 H 1.09001 * 113.61851 * 139.97894 * 21 6 5 37 37 H 1.09003 * 113.61615 * 270.80029 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0789 -0.3239 5 6 2.7533 1.6491 1.3017 6 6 3.8226 2.3182 0.4222 7 1 3.6234 3.3695 0.2142 8 7 5.1934 2.0788 0.8804 9 6 5.5625 0.7747 1.4364 10 16 6.3254 3.2823 0.7697 11 8 5.8789 4.1604 -0.2543 12 8 7.5928 2.6399 0.7447 13 6 6.2616 4.1982 2.2736 14 6 7.2936 4.8326 2.8320 15 6 8.6706 4.8357 2.2198 16 8 9.2887 3.5647 2.4313 17 14 9.7014 6.1676 3.0163 18 6 7.0052 5.4830 4.0193 19 6 5.7365 5.3857 4.4197 20 16 4.8272 4.4166 3.2675 21 6 3.3755 1.3720 -0.7045 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 3.1165 0.7742 1.8410 26 1 2.2139 2.3479 1.9410 27 1 5.3973 0.7792 2.5138 28 1 4.9504 -0.0021 0.9781 29 1 6.6145 0.5767 1.2309 30 1 8.5922 5.0280 1.1498 31 1 9.3912 3.3273 3.3631 32 1 9.7895 5.9343 4.4802 33 1 11.0621 6.1805 2.4217 34 1 7.7500 6.0311 4.5773 35 1 5.3308 5.8301 5.3166 36 1 3.3384 1.8471 -1.6848 37 1 3.9098 0.4219 -0.7146 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10122446_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:24:56 Heat of formation + Delta-G solvation = -63.931923 kcal Electronic energy + Delta-G solvation = -23937.058981 eV Core-core repulsion = 20323.034362 eV Total energy + Delta-G solvation = -3614.024618 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78941 -40.06563 -38.40283 -37.81075 -37.18751 -37.00895 -34.72241 -31.42690 -28.29642 -28.05393 -27.39387 -26.67962 -24.48311 -24.32725 -21.44973 -20.63201 -19.82697 -19.71005 -18.69347 -18.39610 -17.65675 -17.05581 -16.79393 -16.45012 -16.31086 -16.04055 -15.84727 -15.48063 -15.26604 -15.06499 -14.86793 -14.23439 -14.03434 -13.80790 -13.61602 -13.54565 -13.36924 -13.26117 -13.05804 -12.78276 -12.73990 -12.71310 -12.52651 -12.30312 -12.13045 -11.81327 -11.72799 -11.60455 -10.70078 -10.43656 -10.40938 -10.15043 -9.63378 -4.97886 -0.86183 -0.63446 0.25214 0.67208 1.16399 1.25339 1.52855 1.75758 1.91681 2.50994 2.88897 3.26825 3.37639 3.39709 3.48634 3.52372 3.76978 3.79068 3.92736 4.02128 4.15943 4.27634 4.30249 4.51253 4.57055 4.58424 4.67630 4.70562 4.73000 4.80822 4.84299 4.89435 4.90782 4.99153 5.01589 5.09060 5.28810 5.46227 6.30152 6.48569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.062 3.938 4 H 0.109 0.891 5 C -0.153 4.153 6 C 0.115 3.885 7 H 0.126 0.874 8 N -0.981 5.981 9 C 0.076 3.924 10 S 2.709 3.291 11 O -0.982 6.982 12 O -0.951 6.951 13 C -0.793 4.793 14 C 0.000 4.000 15 C -0.113 4.113 16 O -0.518 6.518 17 Si 0.790 3.210 18 C -0.175 4.175 19 C -0.149 4.149 20 S 0.227 5.773 21 C -0.154 4.154 22 H 0.089 0.911 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.383 0.617 32 H -0.250 1.250 33 H -0.297 1.297 34 H 0.177 0.823 35 H 0.212 0.788 36 H 0.081 0.919 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 2.564 6.283 9.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.004 3.996 4 H 0.126 0.874 5 C -0.192 4.192 6 C 0.009 3.991 7 H 0.143 0.857 8 N -0.820 5.820 9 C -0.068 4.068 10 S 2.798 3.202 11 O -0.972 6.972 12 O -0.941 6.941 13 C -0.996 4.996 14 C -0.019 4.019 15 C -0.222 4.222 16 O -0.325 6.325 17 Si 0.690 3.310 18 C -0.204 4.204 19 C -0.286 4.286 20 S 0.493 5.507 21 C -0.194 4.194 22 H 0.108 0.892 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.231 0.769 32 H -0.175 1.175 33 H -0.225 1.225 34 H 0.194 0.806 35 H 0.229 0.771 36 H 0.099 0.901 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.375 2.222 5.333 8.603 hybrid contribution 1.205 -0.437 0.835 1.529 sum -5.170 1.786 6.168 8.244 Atomic orbital electron populations 1.22951 0.79810 1.03577 1.00901 1.87916 1.21178 1.27826 1.94687 1.23579 0.93711 0.85750 0.96576 0.87360 1.23919 0.95906 1.01855 0.97567 1.22379 0.79539 1.00602 0.96601 0.85677 1.57196 1.22674 1.25336 1.76809 1.21780 1.02151 0.83240 0.99611 1.01384 0.72856 0.72838 0.73085 1.93569 1.82348 1.66673 1.54608 1.93657 1.39325 1.74663 1.86432 1.35568 1.06273 1.27568 1.30177 1.19209 0.95063 0.93142 0.94441 1.25580 0.94087 0.96505 1.06054 1.86875 1.80590 1.33781 1.31229 0.93864 0.76810 0.83022 0.77322 1.20483 0.98621 1.04489 0.96821 1.26583 0.96948 1.01065 1.04023 1.83933 1.07002 1.46585 1.13155 1.23750 0.96027 1.00749 0.98859 0.89213 0.92880 0.93192 0.87994 0.88670 0.90703 0.88729 0.90470 0.88361 0.76865 1.17503 1.22481 0.80648 0.77123 0.90052 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.40 -0.74 10.71 -148.98 -1.60 -2.33 16 3 C 0.06 -0.11 4.31 31.12 0.13 0.02 16 4 H 0.11 -0.57 7.87 -2.39 -0.02 -0.59 16 5 C -0.15 0.58 7.34 31.12 0.23 0.81 16 6 C 0.11 -0.04 4.13 45.51 0.19 0.15 16 7 H 0.13 -0.11 7.41 -2.38 -0.02 -0.13 16 8 N -0.98 -2.16 3.39 -513.79 -1.74 -3.90 16 9 C 0.08 -0.06 9.26 127.77 1.18 1.12 16 10 S 2.71 22.70 5.36 -56.49 -0.30 22.39 16 11 O -0.98 -13.34 16.83 -128.00 -2.15 -15.50 16 12 O -0.95 -13.26 13.71 -119.73 -1.64 -14.90 16 13 C -0.79 -3.14 6.48 66.72 0.43 -2.71 16 14 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 15 C -0.11 -0.52 1.87 71.23 0.13 -0.39 16 16 O -0.52 -4.04 11.04 -129.06 -1.42 -5.47 16 17 Si 0.79 -1.06 30.47 68.60 2.09 1.03 16 18 C -0.18 0.58 8.74 21.22 0.19 0.77 16 19 C -0.15 0.88 11.23 66.72 0.75 1.62 16 20 S 0.23 -0.60 23.34 -56.49 -1.32 -1.92 16 21 C -0.15 -0.05 7.45 31.12 0.23 0.18 16 22 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 23 H 0.05 -0.28 8.14 -2.39 -0.02 -0.30 16 24 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.10 -0.35 6.72 -2.39 -0.02 -0.37 16 26 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.09 -0.28 6.34 -2.39 -0.02 -0.30 16 29 H 0.08 0.13 7.02 -2.39 -0.02 0.12 16 30 H 0.10 0.68 7.60 -2.39 -0.02 0.67 16 31 H 0.38 -0.10 8.70 -74.06 -0.64 -0.74 16 32 H -0.25 0.47 6.80 99.48 0.68 1.15 16 33 H -0.30 -1.93 7.11 99.48 0.71 -1.23 16 34 H 0.18 -1.38 5.54 -2.91 -0.02 -1.39 16 35 H 0.21 -2.73 8.06 -2.91 -0.02 -2.76 16 36 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.09 0.13 6.92 -2.39 -0.02 0.12 16 Total: 0.00 -22.34 326.58 -3.04 -25.38 By element: Atomic # 1 Polarization: -7.87 SS G_CDS: 0.46 Total: -7.41 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.59 Total: 2.63 kcal Atomic # 7 Polarization: -2.16 SS G_CDS: -1.74 Total: -3.90 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -6.82 Total: -38.20 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.09 Total: 1.03 kcal Atomic # 16 Polarization: 22.10 SS G_CDS: -1.62 Total: 20.48 kcal Total: -22.34 -3.04 -25.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10122446_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.556 kcal (2) G-P(sol) polarization free energy of solvation -22.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds