Wall clock time and date at job start Mon Mar 8 2021 08:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00016 * 2 1 4 4 H 1.09002 * 112.90854 * 341.25072 * 3 2 1 5 5 C 1.53780 * 113.61369 * 112.50531 * 3 2 1 6 6 C 1.53779 * 87.08028 * 139.97893 * 5 3 2 7 7 H 1.08996 * 113.61326 * 89.12099 * 6 5 3 8 8 N 1.46504 * 113.61083 * 220.01652 * 6 5 3 9 9 C 1.46493 * 120.00282 * 43.46899 * 8 6 5 10 10 S 1.65603 * 119.99754 * 223.45975 * 8 6 5 11 11 O 1.42100 * 106.40312 * 203.54116 * 10 8 6 12 12 O 1.42103 * 106.40416 * 336.46658 * 10 8 6 13 13 C 1.76207 * 107.21571 * 90.00544 * 10 8 6 14 14 C 1.33390 * 122.53698 * 269.70831 * 13 10 8 15 15 S 1.75881 * 109.58938 * 179.90448 * 14 13 10 16 16 C 1.75885 * 90.97250 * 0.30164 * 15 14 13 17 17 C 1.50698 * 125.20145 * 179.79507 * 16 15 14 18 18 O 1.42907 * 109.46948 * 245.04217 * 17 16 15 19 19 Si 1.86302 * 109.47281 * 5.03946 * 17 16 15 20 20 C 1.33385 * 109.59046 * 359.83110 * 16 15 14 21 21 C 1.53772 * 87.08271 * 334.56746 * 6 5 3 22 22 H 1.09003 * 109.47352 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47246 * 299.99725 * 1 2 3 24 24 H 1.09000 * 109.47482 * 60.00048 * 1 2 3 25 25 H 1.08999 * 113.61320 * 254.52547 * 5 3 2 26 26 H 1.09000 * 113.61513 * 25.42955 * 5 3 2 27 27 H 1.08996 * 109.47443 * 92.20702 * 9 8 6 28 28 H 1.08998 * 109.47389 * 212.21640 * 9 8 6 29 29 H 1.09007 * 109.46794 * 332.20913 * 9 8 6 30 30 H 1.08001 * 125.20501 * 0.02681 * 14 13 10 31 31 H 1.08993 * 109.47329 * 125.04328 * 17 16 15 32 32 H 0.96701 * 114.00249 * 60.00166 * 18 17 16 33 33 H 1.48495 * 110.00002 * 58.68206 * 19 17 16 34 34 H 1.48507 * 109.99870 * 180.02562 * 19 17 16 35 35 H 1.07999 * 122.53612 * 179.97438 * 20 16 15 36 36 H 1.09007 * 113.61781 * 270.88403 * 21 6 5 37 37 H 1.08997 * 113.61970 * 139.98080 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0797 -0.3227 5 6 2.7535 1.6488 1.3017 6 6 3.8227 2.3180 0.4221 7 1 3.6223 3.3691 0.2150 8 7 5.1935 2.0784 0.8803 9 6 5.5973 0.7386 1.3138 10 16 6.2866 3.3221 0.9079 11 8 7.5748 2.7257 0.8442 12 8 5.8268 4.2815 -0.0342 13 6 6.1691 4.0846 2.4921 14 6 5.3390 5.0987 2.7405 15 16 5.4969 5.5920 4.4213 16 6 6.7242 4.3628 4.6980 17 6 7.4295 4.1186 6.0072 18 8 8.8196 4.4163 5.8620 19 14 6.6940 5.2138 7.3226 20 6 6.9356 3.6804 3.5716 21 6 3.3755 1.3718 -0.7045 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 2.2141 2.3476 1.9411 26 1 3.1167 0.7739 1.8410 27 1 6.0157 0.1936 0.4677 28 1 6.3481 0.8218 2.0996 29 1 4.7284 0.2034 1.6969 30 1 4.6705 5.5469 2.0203 31 1 7.3097 3.0743 6.2951 32 1 9.0014 5.3310 5.6063 33 1 5.2417 4.9363 7.4609 34 1 7.3814 4.9829 8.6185 35 1 7.6509 2.8739 3.5066 36 1 3.9088 0.4211 -0.7139 37 1 3.3383 1.8470 -1.6848 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10122446_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:25:02 Heat of formation + Delta-G solvation = -71.311878 kcal Electronic energy + Delta-G solvation = -23351.821590 eV Core-core repulsion = 19737.476953 eV Total energy + Delta-G solvation = -3614.344637 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75266 -39.49187 -38.49516 -37.79611 -37.54807 -37.06924 -34.68032 -31.84057 -28.25754 -27.42326 -27.19693 -26.68057 -24.99438 -24.36013 -21.38577 -20.63017 -19.91822 -19.23862 -18.83880 -17.97620 -17.73672 -17.66284 -16.95072 -16.40808 -16.27915 -16.10753 -15.55455 -15.40632 -15.17011 -14.94333 -14.79999 -14.32174 -14.13346 -13.97939 -13.84132 -13.60241 -13.39978 -13.34554 -13.09463 -12.96411 -12.72157 -12.65229 -12.55773 -12.22491 -12.08766 -11.83177 -11.72903 -11.62600 -10.68287 -10.43270 -10.22633 -10.05379 -9.83242 -5.19238 -0.87741 -0.48565 0.33200 0.57547 0.93827 1.16906 1.53184 1.83343 1.89758 2.61617 2.89742 3.13222 3.38621 3.43478 3.52025 3.63148 3.80598 3.82153 3.88797 3.94710 4.18047 4.29065 4.36013 4.48813 4.53955 4.57120 4.61184 4.67233 4.73998 4.81688 4.86684 4.88911 4.91391 5.00970 5.01922 5.05688 5.32974 5.50848 6.30666 6.62110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.060 3.940 4 H 0.109 0.891 5 C -0.161 4.161 6 C 0.120 3.880 7 H 0.137 0.863 8 N -0.980 5.980 9 C 0.080 3.920 10 S 2.716 3.284 11 O -0.982 6.982 12 O -0.975 6.975 13 C -0.694 4.694 14 C -0.086 4.086 15 S 0.195 5.805 16 C -0.235 4.235 17 C -0.035 4.035 18 O -0.550 6.550 19 Si 0.733 3.267 20 C -0.059 4.059 21 C -0.151 4.151 22 H 0.088 0.912 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.206 0.794 31 H 0.123 0.877 32 H 0.397 0.603 33 H -0.259 1.259 34 H -0.270 1.270 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 2.738 2.647 7.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.002 3.998 4 H 0.127 0.873 5 C -0.200 4.200 6 C 0.014 3.986 7 H 0.154 0.846 8 N -0.817 5.817 9 C -0.065 4.065 10 S 2.807 3.193 11 O -0.972 6.972 12 O -0.965 6.965 13 C -0.795 4.795 14 C -0.225 4.225 15 S 0.459 5.541 16 C -0.353 4.353 17 C -0.147 4.147 18 O -0.358 6.358 19 Si 0.634 3.366 20 C -0.088 4.088 21 C -0.191 4.191 22 H 0.107 0.893 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.223 0.777 31 H 0.140 0.860 32 H 0.247 0.753 33 H -0.184 1.184 34 H -0.195 1.195 35 H 0.166 0.834 36 H 0.110 0.890 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.345 3.329 3.847 8.133 hybrid contribution 0.439 -1.504 -0.563 1.665 sum -5.906 1.825 3.284 7.000 Atomic orbital electron populations 1.22941 0.79881 1.03527 1.00856 1.87917 1.21120 1.28041 1.94698 1.23618 0.93912 0.85657 0.96654 0.87315 1.23955 0.96475 1.01855 0.97712 1.22373 0.79244 1.01046 0.95910 0.84558 1.57209 1.23448 1.21919 1.79164 1.21728 1.01881 0.82283 1.00607 1.01182 0.72381 0.72411 0.73372 1.93555 1.39417 1.77345 1.86913 1.93551 1.81912 1.61626 1.59434 1.29848 1.11257 1.14216 1.24215 1.26240 0.98927 0.96284 1.01017 1.84178 1.34228 1.32020 1.03633 1.25193 1.05624 1.03418 1.01042 1.24643 0.85254 1.07169 0.97647 1.86513 1.20946 1.36344 1.91997 0.94153 0.77931 0.86862 0.77604 1.19643 0.98371 1.00656 0.90112 1.23717 0.95675 1.00758 0.98963 0.89300 0.93059 0.93078 0.89052 0.88476 0.91900 0.90412 0.88679 0.77723 0.85986 0.75315 1.18422 1.19509 0.83413 0.89029 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.40 -0.64 10.71 -148.98 -1.60 -2.24 16 3 C 0.06 -0.16 4.31 31.12 0.13 -0.03 16 4 H 0.11 -0.69 7.87 -2.39 -0.02 -0.71 16 5 C -0.16 0.71 7.41 31.12 0.23 0.94 16 6 C 0.12 -0.33 4.19 45.51 0.19 -0.14 16 7 H 0.14 -0.68 7.28 -2.39 -0.02 -0.70 16 8 N -0.98 0.24 3.40 -513.79 -1.75 -1.51 16 9 C 0.08 -0.16 9.28 127.77 1.19 1.03 16 10 S 2.72 12.10 5.71 -56.49 -0.32 11.77 16 11 O -0.98 -11.05 16.75 -128.00 -2.14 -13.19 16 12 O -0.97 -7.91 16.37 -128.00 -2.10 -10.01 16 13 C -0.69 -0.90 5.89 21.22 0.12 -0.78 16 14 C -0.09 0.22 10.70 66.72 0.71 0.93 16 15 S 0.20 -0.80 20.60 -56.49 -1.16 -1.96 16 16 C -0.23 0.15 5.70 24.59 0.14 0.29 16 17 C -0.03 0.05 2.96 71.24 0.21 0.26 16 18 O -0.55 -0.03 12.88 -148.98 -1.92 -1.95 16 19 Si 0.73 -2.59 30.98 68.60 2.13 -0.47 16 20 C -0.06 -0.13 9.59 21.21 0.20 0.08 16 21 C -0.15 0.22 7.50 31.12 0.23 0.46 16 22 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 23 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 24 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.10 -0.33 5.96 -2.39 -0.01 -0.35 16 27 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.08 -0.22 7.87 -2.39 -0.02 -0.24 16 29 H 0.09 -0.46 5.78 -2.38 -0.01 -0.47 16 30 H 0.21 -1.53 8.00 -2.91 -0.02 -1.56 16 31 H 0.12 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H 0.40 -3.09 8.70 -74.06 -0.64 -3.73 16 33 H -0.26 0.04 7.11 99.48 0.71 0.75 16 34 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 35 H 0.15 0.44 7.96 -2.91 -0.02 0.42 16 36 H 0.09 0.02 7.47 -2.38 -0.02 0.00 16 37 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: 0.00 -20.32 333.71 -3.78 -24.10 By element: Atomic # 1 Polarization: -9.24 SS G_CDS: 0.49 Total: -8.75 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 4.60 Total: 4.20 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -1.75 Total: -1.51 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -7.75 Total: -27.38 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.13 Total: -0.47 kcal Atomic # 16 Polarization: 11.30 SS G_CDS: -1.49 Total: 9.81 kcal Total: -20.32 -3.78 -24.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10122446_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.214 kcal (2) G-P(sol) polarization free energy of solvation -20.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds