Wall clock time and date at job start Mon Mar 8 2021 08:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00131 * 2 1 4 4 H 1.09005 * 112.85011 * 18.80433 * 3 2 1 5 5 C 1.53786 * 113.61474 * 149.99813 * 3 2 1 6 6 C 1.53783 * 87.08029 * 140.06801 * 5 3 2 7 7 H 1.08990 * 113.61503 * 89.20131 * 6 5 3 8 8 N 1.46502 * 113.61065 * 220.02010 * 6 5 3 9 9 C 1.46502 * 120.00416 * 54.24750 * 8 6 5 10 10 S 1.65601 * 119.99713 * 234.24272 * 8 6 5 11 11 O 1.42093 * 106.40216 * 336.46329 * 10 8 6 12 12 O 1.42105 * 106.40060 * 203.53977 * 10 8 6 13 13 C 1.76202 * 107.21657 * 90.00660 * 10 8 6 14 14 C 1.33384 * 122.54263 * 84.76704 * 13 10 8 15 15 C 1.50700 * 125.20408 * 0.02562 * 14 13 10 16 16 S 1.75885 * 109.59323 * 179.75299 * 14 13 10 17 17 C 1.75886 * 90.97112 * 0.22473 * 16 14 13 18 18 C 1.50696 * 125.20355 * 180.02562 * 17 16 14 19 19 C 1.33391 * 109.59183 * 0.02562 * 17 16 14 20 20 C 1.50700 * 122.53739 * 180.02562 * 19 17 16 21 21 O 1.42899 * 109.47343 * 23.82091 * 20 19 17 22 22 Si 1.86309 * 109.46940 * 263.82581 * 20 19 17 23 23 C 1.53780 * 87.17209 * 334.60978 * 6 5 3 24 24 H 1.09000 * 109.46911 * 300.00235 * 1 2 3 25 25 H 1.09007 * 109.46748 * 59.99784 * 1 2 3 26 26 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09003 * 113.61487 * 25.51738 * 5 3 2 28 28 H 1.09001 * 113.61369 * 254.61495 * 5 3 2 29 29 H 1.09000 * 109.46591 * 264.80640 * 9 8 6 30 30 H 1.09007 * 109.46910 * 24.79816 * 9 8 6 31 31 H 1.08996 * 109.47579 * 144.80108 * 9 8 6 32 32 H 1.08997 * 109.46964 * 179.72388 * 15 14 13 33 33 H 1.09006 * 109.46906 * 299.72296 * 15 14 13 34 34 H 1.08993 * 109.47146 * 59.71848 * 15 14 13 35 35 H 1.08995 * 109.47173 * 359.97414 * 18 17 16 36 36 H 1.08999 * 109.47057 * 119.97746 * 18 17 16 37 37 H 1.09005 * 109.47142 * 239.97447 * 18 17 16 38 38 H 1.09000 * 109.47411 * 143.82467 * 20 19 17 39 39 H 0.96706 * 114.00085 * 179.97438 * 21 20 19 40 40 H 1.48493 * 109.99825 * 60.00021 * 22 20 19 41 41 H 1.48495 * 110.00048 * 181.31867 * 22 20 19 42 42 H 1.08998 * 113.61337 * 139.94439 * 23 6 5 43 43 H 1.09001 * 113.61369 * 270.84436 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3756 1.3719 0.7046 6 6 3.8220 2.3199 -0.4209 7 1 3.6222 3.3707 -0.2116 8 7 5.1930 2.0818 -0.8794 9 6 5.5964 0.7439 -1.3192 10 16 6.2866 3.3252 -0.9006 11 8 5.5287 4.5250 -0.9724 12 8 7.2765 2.9726 -1.8572 13 6 7.0918 3.3383 0.6666 14 6 8.1462 2.5678 0.9380 15 6 8.7870 1.6017 -0.0248 16 16 8.6792 2.8577 2.5889 17 6 7.3981 4.0390 2.8269 18 6 7.1540 4.8118 4.0974 19 6 6.6755 4.1462 1.7108 20 6 5.4995 5.0811 1.5932 21 8 5.6370 6.1412 2.5416 22 14 3.9252 4.1445 1.9329 23 6 2.7530 1.6533 -1.3028 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9095 0.4216 0.7126 28 1 3.3381 1.8458 1.6855 29 1 6.0623 0.2136 -0.4886 30 1 4.7187 0.1921 -1.6560 31 1 6.3082 0.8305 -2.1401 32 1 9.6305 1.1107 0.4606 33 1 8.0558 0.8523 -0.3282 34 1 9.1381 2.1431 -0.9032 35 1 7.8935 4.5249 4.8449 36 1 7.2374 5.8795 3.8949 37 1 6.1544 4.5899 4.4713 38 1 5.4649 5.4967 0.5862 39 1 4.9137 6.7828 2.5219 40 1 3.9598 3.5729 3.3030 41 1 2.7555 5.0479 1.7889 42 1 2.2139 2.3540 -1.9402 43 1 3.1165 0.7801 -1.8447 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10122446_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:25:05 Heat of formation + Delta-G solvation = -62.415332 kcal Electronic energy + Delta-G solvation = -29024.488968 eV Core-core repulsion = 25099.454876 eV Total energy + Delta-G solvation = -3925.034092 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79989 -40.22264 -38.66645 -37.76896 -37.39694 -37.06978 -34.66152 -34.10706 -30.93685 -28.22138 -28.07776 -27.34451 -26.70933 -25.84652 -24.42468 -23.11762 -20.81239 -20.39174 -19.90140 -19.31520 -18.92531 -17.76726 -17.65965 -17.40908 -17.00254 -16.51148 -16.32914 -16.04459 -15.65391 -15.55491 -15.20538 -14.91007 -14.85760 -14.49100 -14.43424 -14.12055 -14.00342 -13.84077 -13.68757 -13.56716 -13.39401 -13.37326 -13.09235 -13.03233 -12.93517 -12.76251 -12.63802 -12.50887 -12.43331 -12.01869 -11.74904 -11.70338 -11.64235 -11.52312 -10.78598 -10.37900 -10.10118 -9.91953 -9.27388 -5.06100 -0.84701 -0.42508 0.38504 0.66219 0.72835 1.18991 1.37962 1.78369 1.91238 2.55582 2.93224 3.02873 3.15780 3.43258 3.49874 3.64315 3.71524 3.76797 3.82921 4.00537 4.08320 4.17316 4.28777 4.33551 4.51614 4.56971 4.61188 4.63833 4.66704 4.70100 4.71099 4.73675 4.79085 4.87243 4.94210 4.95762 5.00787 5.02526 5.11349 5.13855 5.18700 5.25915 5.37240 5.55235 6.34616 6.50844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.390 6.390 3 C 0.057 3.943 4 H 0.106 0.894 5 C -0.150 4.150 6 C 0.114 3.886 7 H 0.124 0.876 8 N -0.974 5.974 9 C 0.061 3.939 10 S 2.708 3.292 11 O -0.967 6.967 12 O -0.963 6.963 13 C -0.698 4.698 14 C -0.046 4.046 15 C -0.125 4.125 16 S 0.162 5.838 17 C -0.192 4.192 18 C -0.068 4.068 19 C -0.050 4.050 20 C -0.090 4.090 21 O -0.540 6.540 22 Si 0.657 3.343 23 C -0.153 4.153 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.392 0.608 40 H -0.278 1.278 41 H -0.244 1.244 42 H 0.093 0.907 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.115 -4.753 -0.500 5.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.309 6.309 3 C -0.001 4.001 4 H 0.124 0.876 5 C -0.189 4.189 6 C 0.009 3.991 7 H 0.141 0.859 8 N -0.812 5.812 9 C -0.082 4.082 10 S 2.798 3.202 11 O -0.957 6.957 12 O -0.953 6.953 13 C -0.797 4.797 14 C -0.167 4.167 15 C -0.183 4.183 16 S 0.429 5.571 17 C -0.310 4.310 18 C -0.127 4.127 19 C -0.060 4.060 20 C -0.201 4.201 21 O -0.350 6.350 22 Si 0.557 3.443 23 C -0.192 4.192 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.243 0.757 40 H -0.205 1.205 41 H -0.168 1.168 42 H 0.112 0.888 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.798 -5.319 0.387 5.628 hybrid contribution -1.067 2.045 0.657 2.398 sum -2.865 -3.274 1.044 4.475 Atomic orbital electron populations 1.22965 0.80003 1.03618 1.00853 1.87910 1.20914 1.27440 1.94636 1.23654 0.93873 0.85961 0.96651 0.87631 1.23869 0.96398 1.01432 0.97184 1.22276 0.80544 0.99297 0.96999 0.85915 1.57126 1.20381 1.24675 1.79048 1.22087 1.03362 0.81514 1.01279 1.01441 0.72834 0.72913 0.73007 1.93380 1.71179 1.44963 1.86175 1.93547 1.59881 1.83774 1.58076 1.29383 1.14068 1.11975 1.24296 1.24804 0.95411 0.97676 0.98843 1.21189 1.02569 0.97273 0.97312 1.84235 1.30118 1.36010 1.06772 1.24594 1.01080 1.04312 1.01012 1.20291 1.01647 0.99881 0.90846 1.17687 0.98237 0.98206 0.91895 1.25254 1.03903 0.93088 0.97884 1.86535 1.50592 1.38396 1.59455 0.95193 0.76266 0.86844 0.85970 1.24006 0.95540 1.02034 0.97618 0.93320 0.92943 0.89108 0.86434 0.90540 0.90483 0.87620 0.89390 0.88204 0.87092 0.87581 0.91183 0.89330 0.91455 0.85876 0.75698 1.20464 1.16770 0.88808 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 10.85 113.37 1.23 1.13 16 2 O -0.39 0.43 10.72 -148.98 -1.60 -1.17 16 3 C 0.06 -0.25 4.31 31.18 0.13 -0.12 16 4 H 0.11 -0.75 7.87 -2.38 -0.02 -0.77 16 5 C -0.15 0.63 6.62 31.12 0.21 0.84 16 6 C 0.11 -0.38 2.74 45.52 0.12 -0.25 16 7 H 0.12 -0.35 3.60 -2.39 -0.01 -0.35 16 8 N -0.97 2.34 3.40 -513.76 -1.75 0.59 16 9 C 0.06 -0.44 8.93 127.77 1.14 0.70 16 10 S 2.71 10.97 5.13 -56.49 -0.29 10.68 16 11 O -0.97 -7.25 12.43 -128.00 -1.59 -8.84 16 12 O -0.96 -6.67 14.06 -128.00 -1.80 -8.47 16 13 C -0.70 -3.50 5.76 21.22 0.12 -3.38 16 14 C -0.05 -0.12 6.49 24.59 0.16 0.04 16 15 C -0.13 0.33 8.93 71.24 0.64 0.97 16 16 S 0.16 0.49 23.31 -56.49 -1.32 -0.83 16 17 C -0.19 -1.35 6.45 24.59 0.16 -1.19 16 18 C -0.07 -0.35 8.68 71.23 0.62 0.26 16 19 C -0.05 -0.37 4.18 -20.92 -0.09 -0.46 16 20 C -0.09 -0.57 2.35 71.24 0.17 -0.40 16 21 O -0.54 -2.68 9.36 -148.98 -1.39 -4.07 16 22 Si 0.66 2.38 22.82 68.60 1.57 3.94 16 23 C -0.15 0.88 7.42 31.18 0.23 1.11 16 24 H 0.05 -0.29 8.14 -2.39 -0.02 -0.31 16 25 H 0.05 -0.34 8.14 -2.38 -0.02 -0.36 16 26 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H 0.12 -0.66 7.48 -2.39 -0.02 -0.68 16 28 H 0.08 -0.27 4.74 -2.39 -0.01 -0.28 16 29 H 0.08 -0.81 7.28 -2.39 -0.02 -0.83 16 30 H 0.11 -1.07 5.77 -2.38 -0.01 -1.08 16 31 H 0.09 -0.61 7.16 -2.39 -0.02 -0.63 16 32 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.11 -0.77 6.48 -2.38 -0.02 -0.79 16 34 H 0.11 -0.04 6.85 -2.39 -0.02 -0.06 16 35 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.53 6.68 -2.39 -0.02 0.52 16 37 H 0.07 0.39 8.07 -2.38 -0.02 0.37 16 38 H 0.12 0.87 4.88 -2.39 -0.01 0.86 16 39 H 0.39 -1.09 8.74 -74.05 -0.65 -1.73 16 40 H -0.28 -2.40 7.11 99.48 0.71 -1.70 16 41 H -0.24 -1.05 7.11 99.48 0.71 -0.35 16 42 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.11 -0.80 5.98 -2.39 -0.01 -0.81 16 Total: 0.00 -16.77 339.57 -2.87 -19.64 By element: Atomic # 1 Polarization: -11.18 SS G_CDS: 0.45 Total: -10.73 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.84 Total: -0.76 kcal Atomic # 7 Polarization: 2.34 SS G_CDS: -1.75 Total: 0.59 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -6.38 Total: -22.55 kcal Atomic # 14 Polarization: 2.38 SS G_CDS: 1.57 Total: 3.94 kcal Atomic # 16 Polarization: 11.46 SS G_CDS: -1.61 Total: 9.85 kcal Total: -16.77 -2.87 -19.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10122446_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.771 kcal (2) G-P(sol) polarization free energy of solvation -16.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds