Wall clock time and date at job start Mon Mar 8 2021 07:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99820 * 2 1 4 4 O 1.20824 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99664 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.90615 * 48.75236 * 5 3 2 7 7 C 1.53782 * 113.61194 * 179.97438 * 5 3 2 8 8 C 1.53777 * 87.17077 * 140.02475 * 7 5 3 9 9 H 1.08998 * 113.61628 * 89.15935 * 8 7 5 10 10 S 1.81407 * 113.61455 * 219.97618 * 8 7 5 11 11 O 1.42099 * 110.54197 * 285.52385 * 10 8 7 12 12 O 1.42101 * 110.54097 * 62.27543 * 10 8 7 13 13 O 1.52198 * 104.44746 * 173.89702 * 10 8 7 14 14 C 1.35912 * 114.00069 * 74.65465 * 13 10 8 15 15 C 1.38708 * 120.47226 * 94.68612 * 14 13 10 16 16 C 1.50703 * 119.65972 * 359.97438 * 15 14 13 17 17 O 1.42897 * 109.46988 * 38.71221 * 16 15 14 18 18 Si 1.86294 * 109.47197 * 158.71166 * 16 15 14 19 19 N 1.31844 * 120.68290 * 179.70694 * 15 14 13 20 20 C 1.31842 * 121.77781 * 0.58065 * 19 15 14 21 21 C 1.38258 * 120.89020 * 359.70533 * 20 19 15 22 22 C 1.38535 * 119.21722 * 359.97438 * 21 20 19 23 23 C 1.53774 * 87.08198 * 334.52407 * 8 7 5 24 24 H 1.09007 * 109.47451 * 59.99950 * 1 2 3 25 25 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47152 * 300.00244 * 1 2 3 27 27 H 1.08995 * 113.61520 * 25.43058 * 7 5 3 28 28 H 1.08999 * 113.61398 * 254.61406 * 7 5 3 29 29 H 1.09006 * 109.46861 * 278.71043 * 16 15 14 30 30 H 0.96700 * 114.00317 * 65.66044 * 17 16 15 31 31 H 1.48504 * 110.00079 * 58.68444 * 18 16 15 32 32 H 1.48500 * 110.00052 * 180.02562 * 18 16 15 33 33 H 1.08001 * 119.55513 * 179.72649 * 20 19 15 34 34 H 1.07991 * 120.38889 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.80976 * 180.02562 * 22 21 20 36 36 H 1.09002 * 113.61592 * 139.98257 * 23 8 7 37 37 H 1.09005 * 113.62020 * 270.79885 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0249 0.6358 -0.7540 7 6 4.1077 2.7142 -0.0001 8 6 5.1822 2.2295 0.9874 9 1 6.0824 1.8519 0.5025 10 16 5.5404 3.4162 2.3118 11 8 6.3079 4.5032 1.8132 12 8 4.3843 3.6397 3.1072 13 8 6.4953 2.6757 3.2372 14 6 7.7592 2.5615 2.7508 15 6 8.7338 3.4843 3.1010 16 6 8.3859 4.6212 4.0271 17 8 7.4996 4.1521 5.0451 18 14 9.9412 5.2799 4.8131 19 7 9.9626 3.3742 2.6362 20 6 10.3112 2.4000 1.8190 21 6 9.3937 1.4456 1.4203 22 6 8.0927 1.5202 1.8904 23 6 4.1935 1.1262 1.3997 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.4171 3.4407 0.4280 28 1 4.5098 3.0290 -0.9631 29 1 7.9004 5.4158 3.4605 30 1 7.8959 3.5043 5.6438 31 1 10.8845 5.7418 3.7633 32 1 9.6116 6.4012 5.7293 33 1 11.3271 2.3467 1.4564 34 1 9.6881 0.6509 0.7510 35 1 7.3554 0.7881 1.5960 36 1 4.6647 0.1576 1.5664 37 1 3.5272 1.4180 2.2116 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10177738_13206342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:59:12 Heat of formation + Delta-G solvation = -135.469148 kcal Electronic energy + Delta-G solvation = -27337.845515 eV Core-core repulsion = 23177.051277 eV Total energy + Delta-G solvation = -4160.794238 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.074 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73327 -41.94825 -40.23016 -39.70289 -38.27987 -37.86659 -37.38392 -37.18148 -33.99980 -32.26381 -29.99277 -27.95595 -27.65474 -27.33725 -25.45905 -23.77788 -23.35244 -21.97205 -20.97377 -19.91739 -19.24932 -18.96120 -18.64552 -18.48919 -18.00588 -17.57373 -17.20676 -17.03658 -16.82758 -16.33278 -16.09587 -15.58432 -15.08849 -14.84464 -14.76456 -14.55873 -14.51365 -14.15434 -14.02798 -13.86815 -13.77177 -13.66130 -13.53840 -13.23930 -13.16825 -13.15085 -12.83449 -12.40954 -12.13405 -11.90347 -11.85460 -11.75266 -11.39966 -11.31139 -11.09732 -10.58962 -10.13038 -4.89519 -1.22627 -0.37240 -0.30497 0.87574 1.05029 1.30613 1.58002 1.85352 2.11681 2.26357 2.36789 2.50762 2.72894 2.77630 2.97018 2.99001 3.09275 3.26426 3.41004 3.53792 3.57074 3.64283 3.75789 3.91815 4.06944 4.11878 4.16404 4.17418 4.20905 4.31043 4.38990 4.43588 4.51172 4.55308 4.55965 4.59183 4.71256 5.22155 5.28694 6.38106 6.56746 6.61885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.138 0.862 7 C -0.087 4.087 8 C -0.662 4.662 9 H 0.159 0.841 10 S 2.602 3.398 11 O -0.947 6.947 12 O -0.908 6.908 13 O -0.637 6.637 14 C 0.039 3.961 15 C 0.134 3.866 16 C -0.091 4.091 17 O -0.529 6.529 18 Si 0.733 3.267 19 N -0.457 5.457 20 C 0.126 3.874 21 C -0.151 4.151 22 C -0.093 4.093 23 C -0.091 4.091 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.140 0.860 30 H 0.381 0.619 31 H -0.246 1.246 32 H -0.258 1.258 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.105 0.895 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -8.458 -2.549 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.115 4.115 6 H 0.156 0.844 7 C -0.126 4.126 8 C -0.767 4.767 9 H 0.177 0.823 10 S 2.695 3.305 11 O -0.945 6.945 12 O -0.907 6.907 13 O -0.594 6.594 14 C -0.005 4.005 15 C -0.006 4.006 16 C -0.201 4.201 17 O -0.333 6.333 18 Si 0.632 3.368 19 N -0.169 5.169 20 C -0.032 4.032 21 C -0.170 4.170 22 C -0.120 4.120 23 C -0.129 4.129 24 H 0.084 0.916 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.157 0.843 30 H 0.229 0.771 31 H -0.170 1.170 32 H -0.183 1.183 33 H 0.193 0.807 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.124 0.876 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.834 -5.932 -1.901 7.884 hybrid contribution -1.525 -1.259 -1.415 2.432 sum 3.308 -7.191 -3.316 8.582 Atomic orbital electron populations 1.23368 0.75613 1.04156 1.02941 1.86498 1.23984 1.32965 1.83766 1.23423 0.91459 0.81703 0.72560 1.90718 1.66800 1.36383 1.44469 1.22459 0.88029 1.00041 1.00971 0.84418 1.22620 0.93996 0.96094 0.99856 1.32391 1.08036 1.16929 1.19345 0.82284 1.05498 0.74766 0.75150 0.75043 1.93629 1.67999 1.51166 1.81721 1.93676 1.49134 1.83057 1.64794 1.85752 1.27436 1.83779 1.62473 1.18742 0.82035 0.99250 1.00504 1.22150 0.88375 0.94885 0.95230 1.25464 1.07180 0.96229 0.91229 1.86573 1.40215 1.63738 1.42726 0.94122 0.75803 0.83730 0.83144 1.67402 1.16423 1.22461 1.10606 1.23115 1.00719 0.88383 0.90990 1.22195 0.92371 1.01252 1.01210 1.22008 0.98889 0.96187 0.94964 1.22689 0.95492 0.98290 0.96422 0.91619 0.87694 0.91516 0.87146 0.87669 0.84264 0.77139 1.17029 1.18316 0.80734 0.82654 0.82775 0.87609 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.30 10.57 -39.27 -0.41 -0.71 16 3 C 0.47 0.73 7.49 36.01 0.27 1.00 16 4 O -0.50 -2.39 15.65 -18.75 -0.29 -2.68 16 5 C -0.10 0.17 4.27 -90.82 -0.39 -0.22 16 6 H 0.14 -0.64 8.14 -51.93 -0.42 -1.06 16 7 C -0.09 0.09 6.99 -25.92 -0.18 -0.09 16 8 C -0.66 1.26 3.75 -25.92 -0.10 1.16 16 9 H 0.16 -0.82 6.06 -51.93 -0.31 -1.14 16 10 S 2.60 6.94 5.08 -107.50 -0.55 6.39 16 11 O -0.95 -4.64 15.27 -67.04 -1.02 -5.67 16 12 O -0.91 -5.67 17.44 -67.04 -1.17 -6.83 16 13 O -0.64 -1.09 8.17 -54.81 -0.45 -1.54 16 14 C 0.04 0.02 4.60 -39.07 -0.18 -0.16 16 15 C 0.13 0.21 5.71 -82.41 -0.47 -0.26 16 16 C -0.09 -0.22 2.40 36.01 0.09 -0.13 16 17 O -0.53 -1.14 11.15 -56.50 -0.63 -1.77 16 18 Si 0.73 0.47 31.65 -169.99 -5.38 -4.90 16 19 N -0.46 -0.25 8.12 -9.35 -0.08 -0.33 16 20 C 0.13 -0.33 11.18 -17.54 -0.20 -0.53 16 21 C -0.15 0.64 10.11 -39.46 -0.40 0.24 16 22 C -0.09 0.28 8.59 -39.14 -0.34 -0.06 16 23 C -0.09 0.21 7.20 -25.78 -0.19 0.03 16 24 H 0.07 -0.05 8.13 -51.92 -0.42 -0.47 16 25 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 26 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 27 H 0.11 0.08 7.39 -51.93 -0.38 -0.30 16 28 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.14 0.55 7.07 -51.93 -0.37 0.18 16 30 H 0.38 -0.90 8.60 45.56 0.39 -0.51 16 31 H -0.25 -0.78 7.11 56.52 0.40 -0.38 16 32 H -0.26 -0.82 7.11 56.52 0.40 -0.42 16 33 H 0.18 -1.00 8.06 -52.49 -0.42 -1.42 16 34 H 0.16 -1.16 8.06 -52.49 -0.42 -1.58 16 35 H 0.15 -0.97 6.91 -52.49 -0.36 -1.33 16 36 H 0.11 -0.56 8.14 -51.93 -0.42 -0.98 16 37 H 0.11 -0.10 7.51 -51.93 -0.39 -0.49 16 LS Contribution 328.65 15.07 4.95 4.95 Total: 0.00 -12.89 328.65 -10.04 -22.94 By element: Atomic # 1 Polarization: -7.86 SS G_CDS: -4.01 Total: -11.87 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.01 Total: 2.02 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -3.98 Total: -19.20 kcal Atomic # 14 Polarization: 0.47 SS G_CDS: -5.38 Total: -4.90 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -0.55 Total: 6.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -12.89 -10.04 -22.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_13206342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.533 kcal (2) G-P(sol) polarization free energy of solvation -12.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds