Wall clock time and date at job start Mon Mar 8 2021 07:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99820 * 2 1 4 4 O 1.20824 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99664 * 179.97438 * 3 2 1 6 6 H 1.09004 * 112.90615 * 48.75236 * 5 3 2 7 7 C 1.53782 * 113.61194 * 179.97438 * 5 3 2 8 8 C 1.53777 * 87.17077 * 140.02475 * 7 5 3 9 9 H 1.08998 * 113.61628 * 89.15935 * 8 7 5 10 10 S 1.81407 * 113.61455 * 219.97618 * 8 7 5 11 11 O 1.42099 * 110.54197 * 285.52385 * 10 8 7 12 12 O 1.42101 * 110.54097 * 62.27543 * 10 8 7 13 13 O 1.52198 * 104.44746 * 173.89702 * 10 8 7 14 14 C 1.35912 * 114.00069 * 74.65465 * 13 10 8 15 15 C 1.38708 * 120.47226 * 94.68612 * 14 13 10 16 16 C 1.50703 * 119.65972 * 359.97438 * 15 14 13 17 17 O 1.42897 * 109.46988 * 38.71221 * 16 15 14 18 18 Si 1.86294 * 109.47197 * 158.71166 * 16 15 14 19 19 N 1.31844 * 120.68290 * 179.70694 * 15 14 13 20 20 C 1.31842 * 121.77781 * 0.58065 * 19 15 14 21 21 C 1.38258 * 120.89020 * 359.70533 * 20 19 15 22 22 C 1.38535 * 119.21722 * 359.97438 * 21 20 19 23 23 C 1.53774 * 87.08198 * 334.52407 * 8 7 5 24 24 H 1.09007 * 109.47451 * 59.99950 * 1 2 3 25 25 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47152 * 300.00244 * 1 2 3 27 27 H 1.08995 * 113.61520 * 25.43058 * 7 5 3 28 28 H 1.08999 * 113.61398 * 254.61406 * 7 5 3 29 29 H 1.09006 * 109.46861 * 278.71043 * 16 15 14 30 30 H 0.96700 * 114.00317 * 65.66044 * 17 16 15 31 31 H 1.48504 * 110.00079 * 58.68444 * 18 16 15 32 32 H 1.48500 * 110.00052 * 180.02562 * 18 16 15 33 33 H 1.08001 * 119.55513 * 179.72649 * 20 19 15 34 34 H 1.07991 * 120.38889 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.80976 * 180.02562 * 22 21 20 36 36 H 1.09002 * 113.61592 * 139.98257 * 23 8 7 37 37 H 1.09005 * 113.62020 * 270.79885 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0249 0.6358 -0.7540 7 6 4.1077 2.7142 -0.0001 8 6 5.1822 2.2295 0.9874 9 1 6.0824 1.8519 0.5025 10 16 5.5404 3.4162 2.3118 11 8 6.3079 4.5032 1.8132 12 8 4.3843 3.6397 3.1072 13 8 6.4953 2.6757 3.2372 14 6 7.7592 2.5615 2.7508 15 6 8.7338 3.4843 3.1010 16 6 8.3859 4.6212 4.0271 17 8 7.4996 4.1521 5.0451 18 14 9.9412 5.2799 4.8131 19 7 9.9626 3.3742 2.6362 20 6 10.3112 2.4000 1.8190 21 6 9.3937 1.4456 1.4203 22 6 8.0927 1.5202 1.8904 23 6 4.1935 1.1262 1.3997 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.4171 3.4407 0.4280 28 1 4.5098 3.0290 -0.9631 29 1 7.9004 5.4158 3.4605 30 1 7.8959 3.5043 5.6438 31 1 10.8845 5.7418 3.7633 32 1 9.6116 6.4012 5.7293 33 1 11.3271 2.3467 1.4564 34 1 9.6881 0.6509 0.7510 35 1 7.3554 0.7881 1.5960 36 1 4.6647 0.1576 1.5664 37 1 3.5272 1.4180 2.2116 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_13206342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:59:11 Heat of formation + Delta-G solvation = -141.259750 kcal Electronic energy + Delta-G solvation = -27338.096614 eV Core-core repulsion = 23177.051277 eV Total energy + Delta-G solvation = -4161.045337 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.074 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.64677 -41.97660 -40.14896 -39.64373 -38.51368 -37.96126 -37.50324 -37.42245 -33.79986 -32.13823 -29.95261 -27.88300 -27.61974 -27.18166 -25.29945 -23.72428 -23.34797 -21.95871 -20.87946 -19.94938 -19.29646 -18.94603 -18.68704 -18.46470 -18.01122 -17.58107 -17.11203 -17.00722 -16.78552 -16.39465 -16.15771 -15.50527 -14.97709 -14.82702 -14.71528 -14.53569 -14.37771 -14.21398 -14.02922 -13.86412 -13.81769 -13.62614 -13.56364 -13.44554 -13.38880 -13.05878 -12.80619 -12.48528 -12.10697 -11.94745 -11.89784 -11.70488 -11.42015 -11.18092 -11.01596 -10.51828 -10.04090 -5.01796 -1.27773 -0.23541 -0.08145 0.84463 0.99348 1.21307 1.63248 1.71852 1.97909 2.37578 2.43849 2.53589 2.77269 2.88625 2.97251 3.13346 3.18964 3.50425 3.58830 3.69870 3.76394 3.85621 3.88153 4.17563 4.23966 4.25595 4.27279 4.29140 4.34648 4.44299 4.56406 4.62064 4.66856 4.68775 4.80940 4.88201 4.90246 5.26711 5.48251 6.53074 6.56224 6.69475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.461 3.539 4 O -0.542 6.542 5 C -0.086 4.086 6 H 0.183 0.817 7 C -0.106 4.106 8 C -0.625 4.625 9 H 0.206 0.794 10 S 2.587 3.413 11 O -0.984 6.984 12 O -0.966 6.966 13 O -0.641 6.641 14 C 0.012 3.988 15 C 0.108 3.892 16 C -0.108 4.108 17 O -0.548 6.548 18 Si 0.827 3.173 19 N -0.484 5.484 20 C 0.118 3.882 21 C -0.130 4.130 22 C -0.089 4.089 23 C -0.094 4.094 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.397 0.603 31 H -0.280 1.280 32 H -0.298 1.298 33 H 0.205 0.795 34 H 0.201 0.799 35 H 0.196 0.804 36 H 0.151 0.849 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -12.327 -4.658 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.305 3.695 4 O -0.431 6.431 5 C -0.105 4.105 6 H 0.200 0.800 7 C -0.145 4.145 8 C -0.735 4.735 9 H 0.223 0.777 10 S 2.687 3.313 11 O -0.983 6.983 12 O -0.964 6.964 13 O -0.598 6.598 14 C -0.032 4.032 15 C -0.032 4.032 16 C -0.216 4.216 17 O -0.354 6.354 18 Si 0.729 3.271 19 N -0.197 5.197 20 C -0.039 4.039 21 C -0.149 4.149 22 C -0.116 4.116 23 C -0.132 4.132 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.248 0.752 31 H -0.206 1.206 32 H -0.226 1.226 33 H 0.221 0.779 34 H 0.218 0.782 35 H 0.213 0.787 36 H 0.169 0.831 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.553 -9.801 -3.961 12.438 hybrid contribution -2.039 -0.123 -0.853 2.214 sum 4.514 -9.924 -4.814 11.918 Atomic orbital electron populations 1.23560 0.75059 1.05807 1.02378 1.86501 1.24680 1.32559 1.83353 1.24204 0.92910 0.81207 0.71144 1.90706 1.68056 1.37783 1.46595 1.22684 0.85626 0.99803 1.02402 0.79973 1.22785 0.94082 0.96595 1.00990 1.32177 1.09748 1.15036 1.16545 0.77659 1.05643 0.73781 0.76068 0.75801 1.93576 1.68432 1.53964 1.82281 1.93599 1.51032 1.84629 1.67173 1.85717 1.28109 1.83269 1.62708 1.19114 0.81079 1.00716 1.02303 1.21936 0.89567 0.95271 0.96376 1.25569 1.07416 0.96838 0.91811 1.86523 1.41112 1.64517 1.43297 0.93110 0.73022 0.81143 0.79790 1.67310 1.16076 1.24243 1.12045 1.23788 1.02560 0.87746 0.89846 1.22713 0.91105 1.01050 1.00076 1.22527 1.00478 0.95325 0.93233 1.22861 0.94951 0.99935 0.95445 0.91971 0.84918 0.92414 0.90133 0.85213 0.87384 0.75248 1.20611 1.22611 0.77880 0.78165 0.78730 0.83061 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.30 10.57 -51.45 -0.54 -0.84 16 3 C 0.46 1.38 7.49 71.24 0.53 1.91 16 4 O -0.54 -6.17 15.65 21.97 0.34 -5.82 16 5 C -0.09 0.50 4.27 -10.92 -0.05 0.46 16 6 H 0.18 -2.66 8.14 -2.39 -0.02 -2.68 16 7 C -0.11 0.28 6.99 31.12 0.22 0.50 16 8 C -0.62 3.49 3.75 31.12 0.12 3.61 16 9 H 0.21 -3.13 6.06 -2.39 -0.01 -3.15 16 10 S 2.59 18.75 5.08 -56.49 -0.29 18.46 16 11 O -0.98 -12.61 15.27 -118.57 -1.81 -14.42 16 12 O -0.97 -15.93 17.44 -118.57 -2.07 -18.00 16 13 O -0.64 -2.91 8.17 -58.77 -0.48 -3.39 16 14 C 0.01 0.01 4.60 22.60 0.10 0.11 16 15 C 0.11 0.46 5.71 42.67 0.24 0.71 16 16 C -0.11 -0.84 2.40 71.24 0.17 -0.67 16 17 O -0.55 -4.08 11.15 -128.65 -1.43 -5.52 16 18 Si 0.83 3.03 31.65 68.60 2.17 5.20 16 19 N -0.48 -0.53 8.12 -183.50 -1.49 -2.02 16 20 C 0.12 -0.91 11.18 84.70 0.95 0.04 16 21 C -0.13 1.67 10.11 22.35 0.23 1.90 16 22 C -0.09 0.84 8.59 22.56 0.19 1.04 16 23 C -0.09 0.64 7.20 31.21 0.22 0.87 16 24 H 0.06 -0.06 8.13 -2.38 -0.02 -0.08 16 25 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H 0.06 0.01 8.13 -2.38 -0.02 -0.01 16 27 H 0.08 0.32 7.39 -2.39 -0.02 0.30 16 28 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H 0.11 1.40 7.07 -2.38 -0.02 1.38 16 30 H 0.40 -0.90 8.60 -74.06 -0.64 -1.54 16 31 H -0.28 -2.44 7.11 99.48 0.71 -1.73 16 32 H -0.30 -2.85 7.11 99.48 0.71 -2.14 16 33 H 0.20 -2.97 8.06 -2.91 -0.02 -2.99 16 34 H 0.20 -4.35 8.06 -2.92 -0.02 -4.37 16 35 H 0.20 -3.62 6.91 -2.91 -0.02 -3.64 16 36 H 0.15 -2.38 8.14 -2.39 -0.02 -2.40 16 37 H 0.09 -0.11 7.51 -2.38 -0.02 -0.13 16 Total: 0.00 -39.03 328.65 -0.94 -39.97 By element: Atomic # 1 Polarization: -25.77 SS G_CDS: 0.53 Total: -25.24 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 4.13 Total: 11.62 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -1.49 Total: -2.02 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -5.99 Total: -47.99 kcal Atomic # 14 Polarization: 3.03 SS G_CDS: 2.17 Total: 5.20 kcal Atomic # 16 Polarization: 18.75 SS G_CDS: -0.29 Total: 18.46 kcal Total: -39.03 -0.94 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_13206342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.285 kcal (2) G-P(sol) polarization free energy of solvation -39.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds