Wall clock time and date at job start Mon Mar 8 2021 08:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86303 * 109.47325 * 2 1 4 4 C 1.86303 * 109.46571 * 240.00319 * 2 1 3 5 5 C 1.86295 * 109.47400 * 120.00140 * 2 1 3 6 6 C 1.53003 * 109.47166 * 59.99859 * 5 2 1 7 7 C 1.52993 * 109.47296 * 179.97438 * 6 5 2 8 8 S 1.81409 * 109.47079 * 179.97438 * 7 6 5 9 9 O 1.42095 * 110.54153 * 68.59171 * 8 7 6 10 10 O 1.42099 * 110.53996 * 291.83878 * 8 7 6 11 11 O 1.52205 * 104.44676 * 180.21604 * 8 7 6 12 12 C 1.35909 * 114.00217 * 75.67470 * 11 8 7 13 13 C 1.39096 * 120.47502 * 274.16267 * 12 11 8 14 14 C 1.38585 * 118.37106 * 179.97438 * 13 12 11 15 15 C 1.38206 * 119.22673 * 359.97438 * 14 13 12 16 16 N 1.31883 * 120.88770 * 0.02840 * 15 14 13 17 17 C 1.31809 * 121.77861 * 359.97006 * 16 15 14 18 18 C 1.50702 * 119.65659 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.46894 * 218.20556 * 18 17 16 20 20 Si 1.86294 * 109.47121 * 338.20265 * 18 17 16 21 21 H 1.48500 * 109.47060 * 60.00116 * 20 18 17 22 22 H 1.48501 * 109.47311 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47397 * 300.00228 * 20 18 17 24 24 H 1.09007 * 109.46768 * 299.99662 * 1 2 3 25 25 H 1.09000 * 109.47284 * 59.99645 * 1 2 3 26 26 H 1.09002 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47195 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46738 * 300.00585 * 3 2 1 29 29 H 1.08995 * 109.47179 * 60.00124 * 3 2 1 30 30 H 1.09005 * 109.47340 * 299.99332 * 4 2 1 31 31 H 1.09000 * 109.47287 * 60.00038 * 4 2 1 32 32 H 1.09009 * 109.46527 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47451 * 299.99768 * 5 2 1 34 34 H 1.08997 * 109.47141 * 179.97438 * 5 2 1 35 35 H 1.09007 * 109.47000 * 59.99802 * 6 5 2 36 36 H 1.09009 * 109.47030 * 300.00420 * 6 5 2 37 37 H 1.09007 * 109.47122 * 60.00042 * 7 6 5 38 38 H 1.08997 * 109.47211 * 299.99947 * 7 6 5 39 39 H 1.07996 * 120.81408 * 0.25446 * 13 12 11 40 40 H 1.08004 * 120.38234 * 180.02562 * 14 13 12 41 41 H 1.07997 * 119.55710 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.47178 * 98.20813 * 18 17 16 43 43 H 0.96697 * 114.00454 * 65.36299 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4838 -0.8782 -1.5213 5 6 2.4841 -0.8782 1.5210 6 6 1.9741 -2.3208 1.5211 7 6 2.4846 -3.0422 2.7699 8 16 1.8793 -4.7523 2.7702 9 8 2.4946 -5.4992 1.7297 10 8 0.4714 -4.7828 2.9601 11 8 2.4436 -5.3546 4.0490 12 6 1.8000 -4.9573 5.1782 13 6 2.1640 -3.7781 5.8199 14 6 1.4782 -3.4143 6.9678 15 6 0.4627 -4.2279 7.4337 16 7 0.1423 -5.3400 6.8014 17 6 0.7696 -5.7216 5.7068 18 6 0.3637 -7.0014 5.0224 19 8 1.5278 -7.6685 4.5305 20 14 -0.5164 -8.1041 6.2390 21 1 -1.7261 -7.4109 6.7502 22 1 -0.9170 -9.3650 5.5645 23 1 0.3918 -8.4152 7.3721 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.5741 1.7564 -0.0005 28 1 2.1206 2.2703 -0.8899 29 1 2.1208 2.2703 0.8899 30 1 2.1206 -1.9059 -1.5213 31 1 2.1205 -0.3643 -2.4112 32 1 3.5739 -0.8786 -1.5210 33 1 2.1208 -0.3645 2.4111 34 1 3.5740 -0.8786 1.5208 35 1 2.3374 -2.8346 0.6310 36 1 0.8840 -2.3207 1.5210 37 1 2.1217 -2.5285 3.6602 38 1 3.5746 -3.0422 2.7694 39 1 2.9586 -3.1589 5.4305 40 1 1.7337 -2.5051 7.4917 41 1 -0.0750 -3.9497 8.3280 42 1 -0.3029 -6.7731 4.1907 43 1 2.1279 -7.9753 5.2239 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_14927650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:58:20 Heat of formation + Delta-G solvation = -146.802101 kcal Electronic energy + Delta-G solvation = -25627.540554 eV Core-core repulsion = 21924.327207 eV Total energy + Delta-G solvation = -3703.213348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 333.107 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.63634 -40.13697 -38.40614 -37.96804 -37.29342 -35.90578 -33.80269 -32.14327 -29.62483 -28.42311 -28.31777 -28.25978 -27.64837 -25.32223 -23.59906 -22.89312 -21.74622 -19.68617 -19.03545 -18.84081 -18.53148 -17.46863 -17.18620 -16.83341 -16.44600 -15.89900 -15.67633 -14.98034 -14.83777 -14.80779 -14.57648 -14.35163 -14.11703 -14.02347 -13.96472 -13.83471 -13.59678 -13.55981 -13.51806 -13.37401 -13.30932 -13.15586 -13.06137 -12.99539 -12.98594 -12.55828 -12.13173 -11.99232 -11.84247 -11.83036 -11.22245 -11.03189 -10.71764 -10.69348 -10.58322 -10.40252 -10.03204 -1.16543 -0.22911 -0.11050 0.97684 1.07796 1.46996 1.59380 1.90873 1.92176 1.99596 2.01769 2.40410 2.54011 2.73234 2.84395 2.89221 3.16899 3.49539 3.62687 3.63415 3.68500 3.82471 3.87012 4.14989 4.31106 4.37636 4.48863 4.59582 4.64065 4.75343 4.80286 4.80764 4.82905 4.85445 4.85951 4.87135 4.87517 4.87860 5.08295 5.44152 5.45431 5.59370 5.65619 5.66666 6.46202 6.64987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.474 4.474 2 Si 1.068 2.932 3 C -0.461 4.461 4 C -0.477 4.477 5 C -0.407 4.407 6 C -0.121 4.121 7 C -0.628 4.628 8 S 2.575 3.425 9 O -0.969 6.969 10 O -0.980 6.980 11 O -0.649 6.649 12 C 0.016 3.984 13 C -0.091 4.091 14 C -0.134 4.134 15 C 0.117 3.883 16 N -0.489 5.489 17 C 0.106 3.894 18 C -0.114 4.114 19 O -0.545 6.545 20 Si 1.032 2.968 21 H -0.252 1.252 22 H -0.274 1.274 23 H -0.254 1.254 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.190 0.810 40 H 0.198 0.802 41 H 0.204 0.796 42 H 0.127 0.873 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.547 8.233 5.972 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.580 4.580 2 Si 1.260 2.740 3 C -0.568 4.568 4 C -0.583 4.583 5 C -0.493 4.493 6 C -0.160 4.160 7 C -0.759 4.759 8 S 2.676 3.324 9 O -0.968 6.968 10 O -0.978 6.978 11 O -0.606 6.606 12 C -0.028 4.028 13 C -0.118 4.118 14 C -0.153 4.153 15 C -0.041 4.041 16 N -0.202 5.202 17 C -0.034 4.034 18 C -0.223 4.223 19 O -0.350 6.350 20 Si 0.852 3.148 21 H -0.175 1.175 22 H -0.199 1.199 23 H -0.178 1.178 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.181 0.819 38 H 0.185 0.815 39 H 0.207 0.793 40 H 0.215 0.785 41 H 0.221 0.779 42 H 0.145 0.855 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.055 6.503 6.036 8.935 hybrid contribution 1.359 0.909 -0.674 1.768 sum 2.413 7.412 5.361 9.461 Atomic orbital electron populations 1.26437 1.22722 1.04262 1.04536 0.78314 0.65035 0.65536 0.65101 1.26246 1.06487 1.19601 1.04456 1.26480 1.06658 1.08289 1.16823 1.26194 1.07197 0.98993 1.16948 1.21216 1.02237 0.98107 0.94466 1.30856 1.15239 1.19888 1.09886 1.05980 0.74159 0.78752 0.73494 1.93587 1.77949 1.70106 1.55113 1.93580 1.33317 1.87270 1.83664 1.85707 1.68386 1.77212 1.29299 1.19037 0.96948 0.97962 0.88866 1.22497 0.99972 0.93495 0.95850 1.22678 0.94964 1.02559 0.95094 1.23743 0.94112 0.87603 0.98605 1.67330 1.27163 1.18749 1.06935 1.22043 0.91464 0.97302 0.92583 1.25464 0.94210 0.94572 1.08027 1.86537 1.34582 1.76133 1.37798 0.84416 0.79739 0.75596 0.75067 1.17549 1.19906 1.17751 0.90815 0.91612 0.91644 0.91025 0.91718 0.90853 0.91686 0.91595 0.91006 0.88347 0.88670 0.90084 0.89680 0.81903 0.81496 0.79287 0.78467 0.77890 0.85545 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.62 8.65 113.37 0.98 2.60 16 2 Si 1.07 -7.58 12.19 68.60 0.84 -6.75 16 3 C -0.46 2.44 8.65 113.37 0.98 3.42 16 4 C -0.48 1.29 8.65 113.37 0.98 2.27 16 5 C -0.41 3.35 4.45 71.98 0.32 3.67 16 6 C -0.12 0.50 4.59 30.59 0.14 0.64 16 7 C -0.63 3.40 5.41 71.98 0.39 3.79 16 8 S 2.57 15.94 5.17 -56.49 -0.29 15.65 16 9 O -0.97 -14.34 18.09 -118.57 -2.15 -16.48 16 10 O -0.98 -10.57 15.21 -118.57 -1.80 -12.37 16 11 O -0.65 -3.37 8.15 -58.72 -0.48 -3.85 16 12 C 0.02 0.04 4.59 22.60 0.10 0.14 16 13 C -0.09 0.62 8.60 22.56 0.19 0.81 16 14 C -0.13 1.37 10.11 22.34 0.23 1.60 16 15 C 0.12 -0.66 11.18 84.68 0.95 0.28 16 16 N -0.49 -1.33 8.14 -183.50 -1.49 -2.82 16 17 C 0.11 0.57 5.68 42.69 0.24 0.81 16 18 C -0.11 -0.84 2.40 71.24 0.17 -0.67 16 19 O -0.54 -4.22 11.12 -128.54 -1.43 -5.65 16 20 Si 1.03 4.72 26.94 68.60 1.85 6.57 16 21 H -0.25 -1.50 7.11 99.48 0.71 -0.80 16 22 H -0.27 -1.77 7.11 99.48 0.71 -1.06 16 23 H -0.25 -0.94 7.11 99.48 0.71 -0.23 16 24 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 25 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 26 H 0.06 -0.15 7.79 -2.39 -0.02 -0.17 16 27 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 28 H 0.06 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 30 H 0.06 -0.10 7.79 -2.38 -0.02 -0.12 16 31 H 0.06 -0.13 7.96 -2.39 -0.02 -0.14 16 32 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 33 H 0.10 -1.09 7.96 -2.39 -0.02 -1.11 16 34 H 0.09 -0.97 7.96 -2.39 -0.02 -0.98 16 35 H 0.08 -0.30 7.79 -2.38 -0.02 -0.31 16 36 H 0.08 -0.39 7.79 -2.38 -0.02 -0.41 16 37 H 0.16 -1.88 6.26 -2.39 -0.01 -1.90 16 38 H 0.17 -1.75 8.14 -2.39 -0.02 -1.77 16 39 H 0.19 -2.81 7.08 -2.91 -0.02 -2.83 16 40 H 0.20 -3.71 8.06 -2.91 -0.02 -3.74 16 41 H 0.20 -2.60 8.06 -2.91 -0.02 -2.62 16 42 H 0.13 1.21 7.08 -2.39 -0.02 1.20 16 43 H 0.39 -0.03 8.60 -74.06 -0.64 -0.67 16 Total: 0.00 -27.73 365.41 1.84 -25.89 By element: Atomic # 1 Polarization: -20.67 SS G_CDS: 1.12 Total: -19.55 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 5.68 Total: 19.37 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -1.49 Total: -2.82 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -5.86 Total: -38.36 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.68 Total: -0.17 kcal Atomic # 16 Polarization: 15.94 SS G_CDS: -0.29 Total: 15.65 kcal Total: -27.73 1.84 -25.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_14927650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.910 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds