Wall clock time and date at job start Mon Mar 8 2021 09:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47370 * 2 1 4 4 C 1.34225 * 117.00327 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00064 * 179.72464 * 4 3 2 7 7 H 1.08993 * 112.85014 * 49.08123 * 6 4 3 8 8 C 1.53778 * 113.61309 * 180.27539 * 6 4 3 9 9 C 1.53777 * 87.08263 * 139.98105 * 8 6 4 10 10 F 1.39906 * 113.61761 * 219.93488 * 9 8 6 11 11 C 1.52998 * 113.61786 * 89.11383 * 9 8 6 12 12 S 1.81397 * 109.47309 * 185.00335 * 11 9 8 13 13 O 1.42101 * 110.54290 * 285.75366 * 12 11 9 14 14 O 1.42098 * 110.54513 * 62.50920 * 12 11 9 15 15 O 1.52211 * 104.44815 * 174.13137 * 12 11 9 16 16 C 1.35914 * 113.99684 * 74.49457 * 15 12 11 17 17 C 1.38697 * 120.47650 * 95.53352 * 16 15 12 18 18 C 1.50704 * 119.65724 * 359.97438 * 17 16 15 19 19 O 1.42897 * 109.47271 * 38.47079 * 18 17 16 20 20 Si 1.86293 * 109.47196 * 158.47048 * 18 17 16 21 21 N 1.31841 * 120.68694 * 179.69752 * 17 16 15 22 22 C 1.31845 * 121.77650 * 0.58918 * 21 17 16 23 23 C 1.38258 * 120.88731 * 359.69884 * 22 21 17 24 24 C 1.38535 * 119.22088 * 359.97438 * 23 22 21 25 25 C 1.53785 * 87.08235 * 334.56561 * 9 8 6 26 26 H 1.08999 * 109.46618 * 60.00519 * 1 2 3 27 27 H 1.08996 * 109.46820 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47042 * 299.99998 * 1 2 3 29 29 H 1.09005 * 109.47499 * 239.99973 * 2 1 3 30 30 H 1.08998 * 109.47362 * 120.00037 * 2 1 3 31 31 H 1.09005 * 113.61683 * 254.52577 * 8 6 4 32 32 H 1.09005 * 113.61598 * 25.34705 * 8 6 4 33 33 H 1.09003 * 109.47067 * 305.00474 * 11 9 8 34 34 H 1.09001 * 109.47085 * 64.99759 * 11 9 8 35 35 H 1.09005 * 109.47072 * 278.46854 * 18 17 16 36 36 H 0.96696 * 114.00357 * 65.83234 * 19 18 17 37 37 H 1.48501 * 109.99963 * 179.97438 * 20 18 17 38 38 H 1.48495 * 110.00364 * 301.31714 * 20 18 17 39 39 H 1.07999 * 119.55789 * 179.67756 * 22 21 17 40 40 H 1.07998 * 120.39039 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.81009 * 180.02562 * 24 23 22 42 42 H 1.08999 * 113.61381 * 270.88933 * 25 9 8 43 43 H 1.08999 * 113.61522 * 139.97462 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 -0.0057 7 1 3.4738 3.5837 0.7496 8 6 5.4582 2.9680 -0.0110 9 6 5.3532 4.1393 -1.0018 10 9 6.3039 4.0931 -2.0272 11 6 5.2754 5.5094 -0.3253 12 16 5.0067 6.7899 -1.5817 13 8 6.2000 7.0257 -2.3164 14 8 3.7665 6.5857 -2.2446 15 8 4.7991 8.0685 -0.7825 16 6 5.9397 8.5756 -0.2447 17 6 6.6476 9.5690 -0.9048 18 6 6.1466 10.0878 -2.2280 19 8 4.7206 10.1740 -2.1969 20 14 6.8641 11.7777 -2.5443 21 7 7.7513 10.0679 -0.3840 22 6 8.2303 9.6409 0.7677 23 6 7.5835 8.6491 1.4815 24 6 6.4166 8.1018 0.9735 25 6 3.9816 3.5726 -1.4049 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8928 3.2461 0.9492 32 1 5.9113 2.0730 -0.4374 33 1 4.4482 5.5176 0.3845 34 1 6.2085 5.7077 0.2020 35 1 6.4523 9.4086 -3.0239 36 1 4.3797 10.8286 -1.5722 37 1 6.3782 12.3002 -3.8466 38 1 6.4810 12.7052 -1.4497 39 1 9.1404 10.0714 1.1587 40 1 7.9828 8.3056 2.4243 41 1 5.8903 7.3261 1.5099 42 1 4.0310 2.8434 -2.2136 43 1 3.2239 4.3387 -1.5699 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_15494190.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:28:10 Heat of formation + Delta-G solvation = -190.940486 kcal Electronic energy + Delta-G solvation = -33848.730541 eV Core-core repulsion = 28905.001672 eV Total energy + Delta-G solvation = -4943.728869 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.096 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.14886 -42.69115 -41.96181 -40.19026 -39.65402 -38.52319 -38.10029 -37.65093 -37.39709 -33.87522 -32.79131 -32.19682 -31.59942 -27.72487 -27.36492 -27.17432 -25.33491 -24.06000 -23.58897 -22.51518 -22.01483 -20.57728 -19.93663 -19.25804 -19.03596 -18.94913 -18.59933 -18.10542 -17.78617 -17.47948 -17.23359 -16.97173 -16.74346 -16.43280 -16.33166 -16.13373 -15.59868 -15.48366 -14.95055 -14.92534 -14.73790 -14.55330 -14.26169 -14.21429 -14.18976 -13.89391 -13.76329 -13.71847 -13.56639 -13.51132 -13.41478 -13.09449 -13.00256 -12.79172 -12.63173 -12.53349 -12.50844 -12.13755 -12.02431 -11.61201 -11.56532 -11.50520 -11.23581 -11.04441 -10.72297 -10.08815 -4.82562 -1.36277 -0.27283 -0.11452 0.85236 0.94356 1.21985 1.51045 1.63792 1.84268 2.23774 2.41101 2.57183 2.61798 2.83137 2.86226 2.90512 3.07835 3.10219 3.21752 3.48467 3.60071 3.65178 3.73122 3.83384 3.87705 3.94025 4.00064 4.01412 4.17316 4.28789 4.30229 4.36378 4.41422 4.45915 4.54918 4.61897 4.70155 4.76820 4.79557 4.86708 4.87121 4.96626 5.09946 5.37157 5.45799 6.28845 6.55448 6.63007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.473 3.527 5 O -0.533 6.533 6 C -0.100 4.100 7 H 0.176 0.824 8 C -0.113 4.113 9 C 0.091 3.909 10 F -0.203 7.203 11 C -0.654 4.654 12 S 2.585 3.415 13 O -0.970 6.970 14 O -0.953 6.953 15 O -0.643 6.643 16 C 0.004 3.996 17 C 0.108 3.892 18 C -0.116 4.116 19 O -0.539 6.539 20 Si 0.810 3.190 21 N -0.471 5.471 22 C 0.121 3.879 23 C -0.134 4.134 24 C -0.093 4.093 25 C -0.164 4.164 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.102 0.898 33 H 0.208 0.792 34 H 0.188 0.812 35 H 0.126 0.874 36 H 0.388 0.612 37 H -0.295 1.295 38 H -0.281 1.281 39 H 0.210 0.790 40 H 0.201 0.799 41 H 0.196 0.804 42 H 0.104 0.896 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 0.127 11.238 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.423 6.423 6 C -0.118 4.118 7 H 0.194 0.806 8 C -0.152 4.152 9 C 0.072 3.928 10 F -0.183 7.183 11 C -0.782 4.782 12 S 2.683 3.317 13 O -0.969 6.969 14 O -0.951 6.951 15 O -0.600 6.600 16 C -0.040 4.040 17 C -0.031 4.031 18 C -0.223 4.223 19 O -0.346 6.346 20 Si 0.712 3.288 21 N -0.184 5.184 22 C -0.036 4.036 23 C -0.153 4.153 24 C -0.120 4.120 25 C -0.201 4.201 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.225 0.775 34 H 0.206 0.794 35 H 0.144 0.856 36 H 0.237 0.763 37 H -0.223 1.223 38 H -0.207 1.207 39 H 0.227 0.773 40 H 0.218 0.782 41 H 0.213 0.787 42 H 0.123 0.877 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.447 1.203 9.526 9.909 hybrid contribution -1.642 -1.513 0.660 2.328 sum 0.806 -0.311 10.186 10.223 Atomic orbital electron populations 1.21835 0.90756 1.04294 1.03780 1.23288 0.96905 0.79170 1.02660 1.86521 1.24033 1.33658 1.83269 1.23722 0.80713 0.92587 0.71299 1.90692 1.61123 1.44022 1.46434 1.22504 0.97396 0.90997 1.00938 0.80641 1.23601 0.93531 0.96582 1.01436 1.21835 0.88411 0.94796 0.87764 1.92959 1.66780 1.97394 1.61183 1.31277 1.18139 1.09401 1.19359 1.05677 0.73894 0.75606 0.76478 1.93607 1.50561 1.82142 1.70544 1.93604 1.44917 1.84789 1.71761 1.85751 1.42203 1.56869 1.75214 1.19148 0.85933 1.01674 0.97258 1.21927 0.91472 0.92923 0.96778 1.25572 0.85090 1.16023 0.95653 1.86622 1.18215 1.63833 1.65928 0.92461 0.90557 0.69533 0.76254 1.67047 1.10102 1.27327 1.13929 1.23877 0.99687 0.92175 0.87877 1.22741 0.93601 0.95878 1.03066 1.22563 0.96948 1.00850 0.91668 1.23984 0.96412 1.02363 0.97384 0.91490 0.88545 0.90975 0.91555 0.90880 0.84628 0.87965 0.77458 0.79400 0.85623 0.76308 1.22302 1.20670 0.77298 0.78212 0.78699 0.87708 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.59 10.29 71.98 0.74 1.33 16 2 C 0.05 0.01 6.19 71.98 0.45 0.46 16 3 O -0.36 -0.80 10.22 -51.37 -0.53 -1.32 16 4 C 0.47 1.11 7.48 71.24 0.53 1.65 16 5 O -0.53 -4.58 15.65 21.95 0.34 -4.24 16 6 C -0.10 0.49 3.91 -11.01 -0.04 0.45 16 7 H 0.18 -2.36 7.62 -2.39 -0.02 -2.38 16 8 C -0.11 0.60 6.89 31.12 0.21 0.81 16 9 C 0.09 -0.16 1.74 -10.27 -0.02 -0.18 16 10 F -0.20 -1.24 16.79 44.97 0.75 -0.49 16 11 C -0.65 5.00 4.65 71.98 0.33 5.33 16 12 S 2.59 13.52 4.86 -56.49 -0.27 13.25 16 13 O -0.97 -11.21 15.28 -118.57 -1.81 -13.02 16 14 O -0.95 -11.72 16.72 -118.57 -1.98 -13.70 16 15 O -0.64 -2.21 8.16 -58.78 -0.48 -2.69 16 16 C 0.00 0.00 4.59 22.60 0.10 0.11 16 17 C 0.11 0.41 5.73 42.67 0.24 0.65 16 18 C -0.12 -0.81 2.44 71.24 0.17 -0.64 16 19 O -0.54 -4.64 11.14 -128.59 -1.43 -6.07 16 20 Si 0.81 2.87 31.65 68.60 2.17 5.04 16 21 N -0.47 0.12 8.12 -183.51 -1.49 -1.37 16 22 C 0.12 -1.03 11.18 84.70 0.95 -0.09 16 23 C -0.13 1.71 10.11 22.35 0.23 1.94 16 24 C -0.09 0.89 8.56 22.56 0.19 1.08 16 25 C -0.16 0.15 6.95 31.12 0.22 0.36 16 26 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.10 -0.65 8.14 -2.39 -0.02 -0.66 16 28 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.07 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 31 H 0.14 -1.70 8.10 -2.38 -0.02 -1.72 16 32 H 0.10 -0.07 7.43 -2.38 -0.02 -0.08 16 33 H 0.21 -3.61 7.31 -2.39 -0.02 -3.62 16 34 H 0.19 -2.74 6.56 -2.39 -0.02 -2.75 16 35 H 0.13 1.19 7.17 -2.38 -0.02 1.18 16 36 H 0.39 0.63 8.59 -74.06 -0.64 0.00 16 37 H -0.29 -2.77 7.11 99.48 0.71 -2.06 16 38 H -0.28 -1.76 7.11 99.48 0.71 -1.05 16 39 H 0.21 -3.35 8.06 -2.91 -0.02 -3.37 16 40 H 0.20 -4.28 8.06 -2.91 -0.02 -4.31 16 41 H 0.20 -3.69 7.05 -2.91 -0.02 -3.71 16 42 H 0.10 0.12 8.09 -2.39 -0.02 0.10 16 43 H 0.12 -0.14 6.81 -2.39 -0.02 -0.15 16 Total: 0.00 -36.55 375.05 0.06 -36.49 By element: Atomic # 1 Polarization: -25.62 SS G_CDS: 0.47 Total: -25.15 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 4.31 Total: 13.26 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -1.49 Total: -1.37 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -5.89 Total: -41.04 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.75 Total: -0.49 kcal Atomic # 14 Polarization: 2.87 SS G_CDS: 2.17 Total: 5.04 kcal Atomic # 16 Polarization: 13.52 SS G_CDS: -0.27 Total: 13.25 kcal Total: -36.55 0.06 -36.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_15494190.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.446 kcal (2) G-P(sol) polarization free energy of solvation -36.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds