Wall clock time and date at job start Mon Mar 8 2021 09:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46954 * 2 1 4 4 C 1.50700 * 109.47450 * 239.99640 * 2 1 3 5 5 C 1.38698 * 119.65850 * 320.63495 * 4 2 1 6 6 O 1.35912 * 120.47466 * 0.02562 * 5 4 2 7 7 S 1.52196 * 114.00445 * 253.88021 * 6 5 4 8 8 O 1.42091 * 104.28347 * 191.90933 * 7 6 5 9 9 O 1.42107 * 104.27521 * 319.77069 * 7 6 5 10 10 C 1.81405 * 104.44934 * 75.83848 * 7 6 5 11 11 H 1.09003 * 112.84594 * 55.33376 * 10 7 6 12 12 C 1.53776 * 113.61646 * 186.53554 * 10 7 6 13 13 C 1.53780 * 87.08232 * 139.97986 * 12 10 7 14 14 H 1.08993 * 113.61706 * 219.92712 * 13 12 10 15 15 O 1.42904 * 113.61379 * 89.11515 * 13 12 10 16 16 C 1.42904 * 114.00274 * 149.99891 * 15 13 12 17 17 C 1.50690 * 109.47340 * 179.97438 * 16 15 13 18 18 C 1.38239 * 120.00504 * 269.72912 * 17 16 15 19 19 C 1.38227 * 120.00515 * 179.78716 * 18 17 16 20 20 C 1.38238 * 119.99859 * 0.46318 * 19 18 17 21 21 C 1.38239 * 119.99815 * 359.77099 * 20 19 18 22 22 C 1.38229 * 119.99958 * 0.02562 * 21 20 19 23 23 C 1.53785 * 113.61494 * 284.14249 * 10 7 6 24 24 C 1.39138 * 119.05365 * 179.76745 * 5 4 2 25 25 C 1.38538 * 118.37501 * 0.47099 * 24 5 4 26 26 C 1.38257 * 119.21774 * 359.48598 * 25 24 5 27 27 N 1.31839 * 119.65511 * 140.61194 * 4 2 1 28 28 H 0.96702 * 113.99753 * 64.55380 * 1 2 3 29 29 H 1.09001 * 109.46962 * 119.99335 * 2 1 3 30 30 H 1.48499 * 109.99999 * 59.99890 * 3 2 1 31 31 H 1.48496 * 109.99761 * 181.31500 * 3 2 1 32 32 H 1.09005 * 113.61010 * 254.52514 * 12 10 7 33 33 H 1.08991 * 113.61635 * 25.34679 * 12 10 7 34 34 H 1.08996 * 109.46869 * 300.00520 * 16 15 13 35 35 H 1.09002 * 109.46733 * 59.99880 * 16 15 13 36 36 H 1.08010 * 119.99431 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.00610 * 180.24886 * 19 18 17 38 38 H 1.08000 * 120.00052 * 179.78568 * 20 19 18 39 39 H 1.08001 * 119.99484 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99978 * 179.97438 * 22 21 20 41 41 H 1.08999 * 113.61083 * 334.56621 * 23 10 7 42 42 H 1.08997 * 113.61411 * 105.46449 * 23 10 7 43 43 H 1.08002 * 120.81446 * 180.25857 * 24 5 4 44 44 H 1.07997 * 120.39344 * 179.75573 * 25 24 5 45 45 H 1.08002 * 119.55751 * 180.27164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.2817 -1.8514 -1.6775 6 8 0.1967 -2.3313 -1.0145 7 16 0.4722 -3.5911 -0.2062 8 8 -0.8177 -4.0648 0.1554 9 8 1.3287 -4.3611 -1.0386 10 6 1.3677 -3.0029 1.2577 11 1 0.8257 -2.2305 1.8033 12 6 1.8947 -4.1359 2.1540 13 6 3.1699 -3.2952 2.3327 14 1 4.0865 -3.8848 2.3226 15 8 3.1068 -2.3865 3.4338 16 6 4.3736 -2.1155 4.0371 17 6 4.1896 -1.1508 5.1800 18 6 4.2713 0.2108 4.9553 19 6 4.0981 1.0959 6.0028 20 6 3.8527 0.6192 7.2770 21 6 3.7758 -0.7425 7.5026 22 6 3.9448 -1.6274 6.4543 23 6 2.8367 -2.6439 0.9782 24 6 1.7533 -2.4946 -2.8176 25 6 2.8651 -1.9706 -3.4568 26 6 3.4586 -0.8288 -2.9513 27 7 2.9837 -0.2408 -1.8709 28 1 -0.3933 0.3796 -0.7977 29 1 1.7923 -0.5137 0.8901 30 1 1.5614 2.4679 1.2085 31 1 3.5345 1.7703 -0.0320 32 1 1.3247 -4.2656 3.0741 33 1 2.0588 -5.0730 1.6221 34 1 4.8041 -3.0444 4.4109 35 1 5.0424 -1.6773 3.2963 36 1 4.4666 0.5831 3.9604 37 1 4.1579 2.1598 5.8266 38 1 3.7209 1.3106 8.0961 39 1 3.5837 -1.1148 8.4981 40 1 3.8852 -2.6912 6.6306 41 1 3.2603 -3.1719 0.1238 42 1 3.0262 -1.5709 0.9502 43 1 1.2666 -3.3826 -3.1931 44 1 3.2611 -2.4459 -4.3420 45 1 4.3229 -0.4131 -3.4478 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10177738_15608174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:35:03 Heat of formation + Delta-G solvation = -61.850609 kcal Electronic energy + Delta-G solvation = -34023.060751 eV Core-core repulsion = 29488.387385 eV Total energy + Delta-G solvation = -4534.673366 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.106 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.75256 -40.92891 -40.21265 -40.03953 -38.33836 -37.92402 -37.19234 -37.10803 -33.88250 -32.78582 -32.25203 -31.87931 -28.16025 -27.48686 -27.04271 -26.50469 -25.47365 -23.63481 -23.56880 -22.37374 -22.08876 -21.13267 -19.83057 -19.24566 -18.78210 -18.56344 -18.16211 -17.81862 -17.58963 -17.06194 -16.85220 -16.75650 -16.42553 -16.13240 -15.81031 -15.51784 -15.41366 -15.07538 -14.91445 -14.71815 -14.49931 -14.38322 -14.21118 -14.12608 -13.82021 -13.80223 -13.69477 -13.64126 -13.55113 -13.30615 -13.24340 -13.13624 -12.61267 -12.27694 -12.16136 -12.00015 -11.94319 -11.88979 -11.38950 -11.24735 -10.98991 -10.75952 -10.57336 -10.11605 -9.89166 -9.83965 -4.95085 -1.13279 -0.35734 -0.14347 0.25275 0.43290 0.93493 1.24263 1.78468 2.02447 2.26365 2.28039 2.41651 2.62669 2.72392 2.88006 3.05339 3.07209 3.16607 3.27373 3.47182 3.54221 3.60057 3.67275 3.71946 3.78776 3.85361 3.98112 4.03728 4.08147 4.15798 4.16641 4.19027 4.20880 4.27954 4.45292 4.48370 4.53567 4.59499 4.63168 4.66721 4.67572 4.75340 4.77816 4.97535 5.05062 5.27010 5.46911 5.54970 5.56678 5.97750 6.02117 6.34020 6.52429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.527 6.527 2 C -0.090 4.090 3 Si 0.727 3.273 4 C 0.109 3.891 5 C 0.030 3.970 6 O -0.639 6.639 7 S 2.598 3.402 8 O -0.920 6.920 9 O -0.955 6.955 10 C -0.633 4.633 11 H 0.166 0.834 12 C -0.108 4.108 13 C 0.083 3.917 14 H 0.089 0.911 15 O -0.355 6.355 16 C 0.101 3.899 17 C -0.095 4.095 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.097 4.097 23 C -0.143 4.143 24 C -0.048 4.048 25 C -0.153 4.153 26 C 0.123 3.877 27 N -0.459 5.459 28 H 0.384 0.616 29 H 0.133 0.867 30 H -0.258 1.258 31 H -0.247 1.247 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.164 2.073 -2.491 6.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.200 4.200 3 Si 0.626 3.374 4 C -0.031 4.031 5 C -0.015 4.015 6 O -0.596 6.596 7 S 2.693 3.307 8 O -0.918 6.918 9 O -0.954 6.954 10 C -0.740 4.740 11 H 0.184 0.816 12 C -0.147 4.147 13 C 0.023 3.977 14 H 0.107 0.893 15 O -0.274 6.274 16 C 0.025 3.975 17 C -0.095 4.095 18 C -0.118 4.118 19 C -0.141 4.141 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.116 4.116 23 C -0.181 4.181 24 C -0.075 4.075 25 C -0.173 4.173 26 C -0.034 4.034 27 N -0.172 5.172 28 H 0.232 0.768 29 H 0.150 0.850 30 H -0.183 1.183 31 H -0.171 1.171 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.176 0.824 44 H 0.172 0.828 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.377 2.849 -1.548 6.279 hybrid contribution -0.115 -1.398 0.143 1.410 sum 5.262 1.450 -1.405 5.636 Atomic orbital electron populations 1.86532 1.15440 1.85993 1.45168 1.25645 0.86301 1.12600 0.95451 0.93657 0.81781 0.76073 0.85892 1.22061 0.91540 0.91988 0.97518 1.18818 0.88196 0.98279 0.96173 1.85746 1.44106 1.62484 1.67250 1.05428 0.75063 0.73770 0.76402 1.93657 1.37433 1.76877 1.83865 1.93634 1.70220 1.68963 1.62555 1.32190 1.09838 1.11443 1.20542 0.81622 1.22870 0.96993 0.94548 1.00274 1.22805 0.98176 0.90747 0.85950 0.89284 1.87994 1.29546 1.63954 1.45874 1.21455 0.85647 0.97354 0.93051 1.19523 1.02384 0.93734 0.93883 1.21065 0.98984 0.92564 0.99171 1.21196 1.00022 0.99892 0.92958 1.21275 0.98721 0.95746 0.97167 1.21206 1.00165 0.93443 0.99212 1.21080 0.98259 0.99988 0.92226 1.23523 0.90749 1.03811 1.00028 1.22153 0.95280 0.98787 0.91330 1.22254 0.95870 0.97235 1.01942 1.23068 0.98187 0.91522 0.90651 1.67391 1.10146 1.31271 1.08363 0.76754 0.85037 1.18346 1.17102 0.87879 0.87562 0.91804 0.92088 0.86129 0.85735 0.85743 0.85661 0.85842 0.87357 0.88789 0.82379 0.82781 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.16 11.09 -56.33 -0.63 -0.78 16 2 C -0.09 0.00 2.18 36.01 0.08 0.08 16 3 Si 0.73 -0.25 31.80 -169.99 -5.41 -5.65 16 4 C 0.11 0.00 4.59 -82.42 -0.38 -0.38 16 5 C 0.03 0.02 4.46 -39.08 -0.17 -0.15 16 6 O -0.64 -1.34 8.20 -54.79 -0.45 -1.79 16 7 S 2.60 6.67 5.15 -107.50 -0.55 6.12 16 8 O -0.92 -5.95 18.09 -67.04 -1.21 -7.16 16 9 O -0.96 -2.92 14.49 -67.04 -0.97 -3.89 16 10 C -0.63 -0.25 3.42 -25.92 -0.09 -0.34 16 11 H 0.17 0.07 7.68 -51.93 -0.40 -0.33 16 12 C -0.11 0.07 7.50 -25.92 -0.19 -0.13 16 13 C 0.08 -0.06 4.38 -25.83 -0.11 -0.18 16 14 H 0.09 -0.23 7.87 -51.93 -0.41 -0.64 16 15 O -0.35 -0.40 10.25 -35.23 -0.36 -0.76 16 16 C 0.10 -0.01 5.90 36.00 0.21 0.20 16 17 C -0.10 -0.13 5.51 -104.63 -0.58 -0.71 16 18 C -0.10 -0.14 9.70 -39.58 -0.38 -0.52 16 19 C -0.12 -0.14 10.05 -39.59 -0.40 -0.53 16 20 C -0.11 -0.10 10.05 -39.58 -0.40 -0.50 16 21 C -0.12 -0.11 10.05 -39.58 -0.40 -0.51 16 22 C -0.10 -0.11 9.70 -39.59 -0.38 -0.49 16 23 C -0.14 0.10 5.33 -25.83 -0.14 -0.04 16 24 C -0.05 0.02 8.48 -39.14 -0.33 -0.31 16 25 C -0.15 0.43 10.11 -39.46 -0.40 0.03 16 26 C 0.12 -0.33 11.18 -17.54 -0.20 -0.53 16 27 N -0.46 0.28 8.11 -9.35 -0.08 0.20 16 28 H 0.38 -1.13 8.76 45.56 0.40 -0.73 16 29 H 0.13 0.01 4.06 -51.93 -0.21 -0.20 16 30 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 31 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 32 H 0.10 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.11 -0.23 8.10 -51.93 -0.42 -0.65 16 34 H 0.06 -0.10 8.09 -51.93 -0.42 -0.52 16 35 H 0.06 -0.07 8.08 -51.93 -0.42 -0.49 16 36 H 0.12 0.02 8.06 -52.48 -0.42 -0.41 16 37 H 0.12 -0.07 8.06 -52.48 -0.42 -0.50 16 38 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 39 H 0.13 -0.11 8.06 -52.49 -0.42 -0.54 16 40 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 41 H 0.11 -0.16 7.57 -51.93 -0.39 -0.55 16 42 H 0.09 -0.06 5.17 -51.93 -0.27 -0.33 16 43 H 0.16 -0.13 7.47 -52.49 -0.39 -0.52 16 44 H 0.15 -0.84 8.06 -52.49 -0.42 -1.26 16 45 H 0.17 -0.98 8.06 -52.49 -0.42 -1.40 16 LS Contribution 381.38 15.07 5.75 5.75 Total: 0.00 -10.14 381.38 -13.68 -23.82 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: -5.51 Total: -10.85 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.26 Total: -5.01 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -3.62 Total: -14.38 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: -5.41 Total: -5.65 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -0.55 Total: 6.12 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -10.14 -13.68 -23.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_15608174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.031 kcal (2) G-P(sol) polarization free energy of solvation -10.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds