Wall clock time and date at job start Mon Mar 8 2021 09:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46954 * 2 1 4 4 C 1.50700 * 109.47450 * 239.99640 * 2 1 3 5 5 C 1.38698 * 119.65850 * 320.63495 * 4 2 1 6 6 O 1.35912 * 120.47466 * 0.02562 * 5 4 2 7 7 S 1.52196 * 114.00445 * 253.88021 * 6 5 4 8 8 O 1.42091 * 104.28347 * 191.90933 * 7 6 5 9 9 O 1.42107 * 104.27521 * 319.77069 * 7 6 5 10 10 C 1.81405 * 104.44934 * 75.83848 * 7 6 5 11 11 H 1.09003 * 112.84594 * 55.33376 * 10 7 6 12 12 C 1.53776 * 113.61646 * 186.53554 * 10 7 6 13 13 C 1.53780 * 87.08232 * 139.97986 * 12 10 7 14 14 H 1.08993 * 113.61706 * 219.92712 * 13 12 10 15 15 O 1.42904 * 113.61379 * 89.11515 * 13 12 10 16 16 C 1.42904 * 114.00274 * 149.99891 * 15 13 12 17 17 C 1.50690 * 109.47340 * 179.97438 * 16 15 13 18 18 C 1.38239 * 120.00504 * 269.72912 * 17 16 15 19 19 C 1.38227 * 120.00515 * 179.78716 * 18 17 16 20 20 C 1.38238 * 119.99859 * 0.46318 * 19 18 17 21 21 C 1.38239 * 119.99815 * 359.77099 * 20 19 18 22 22 C 1.38229 * 119.99958 * 0.02562 * 21 20 19 23 23 C 1.53785 * 113.61494 * 284.14249 * 10 7 6 24 24 C 1.39138 * 119.05365 * 179.76745 * 5 4 2 25 25 C 1.38538 * 118.37501 * 0.47099 * 24 5 4 26 26 C 1.38257 * 119.21774 * 359.48598 * 25 24 5 27 27 N 1.31839 * 119.65511 * 140.61194 * 4 2 1 28 28 H 0.96702 * 113.99753 * 64.55380 * 1 2 3 29 29 H 1.09001 * 109.46962 * 119.99335 * 2 1 3 30 30 H 1.48499 * 109.99999 * 59.99890 * 3 2 1 31 31 H 1.48496 * 109.99761 * 181.31500 * 3 2 1 32 32 H 1.09005 * 113.61010 * 254.52514 * 12 10 7 33 33 H 1.08991 * 113.61635 * 25.34679 * 12 10 7 34 34 H 1.08996 * 109.46869 * 300.00520 * 16 15 13 35 35 H 1.09002 * 109.46733 * 59.99880 * 16 15 13 36 36 H 1.08010 * 119.99431 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.00610 * 180.24886 * 19 18 17 38 38 H 1.08000 * 120.00052 * 179.78568 * 20 19 18 39 39 H 1.08001 * 119.99484 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.99978 * 179.97438 * 22 21 20 41 41 H 1.08999 * 113.61083 * 334.56621 * 23 10 7 42 42 H 1.08997 * 113.61411 * 105.46449 * 23 10 7 43 43 H 1.08002 * 120.81446 * 180.25857 * 24 5 4 44 44 H 1.07997 * 120.39344 * 179.75573 * 25 24 5 45 45 H 1.08002 * 119.55751 * 180.27164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.2817 -1.8514 -1.6775 6 8 0.1967 -2.3313 -1.0145 7 16 0.4722 -3.5911 -0.2062 8 8 -0.8177 -4.0648 0.1554 9 8 1.3287 -4.3611 -1.0386 10 6 1.3677 -3.0029 1.2577 11 1 0.8257 -2.2305 1.8033 12 6 1.8947 -4.1359 2.1540 13 6 3.1699 -3.2952 2.3327 14 1 4.0865 -3.8848 2.3226 15 8 3.1068 -2.3865 3.4338 16 6 4.3736 -2.1155 4.0371 17 6 4.1896 -1.1508 5.1800 18 6 4.2713 0.2108 4.9553 19 6 4.0981 1.0959 6.0028 20 6 3.8527 0.6192 7.2770 21 6 3.7758 -0.7425 7.5026 22 6 3.9448 -1.6274 6.4543 23 6 2.8367 -2.6439 0.9782 24 6 1.7533 -2.4946 -2.8176 25 6 2.8651 -1.9706 -3.4568 26 6 3.4586 -0.8288 -2.9513 27 7 2.9837 -0.2408 -1.8709 28 1 -0.3933 0.3796 -0.7977 29 1 1.7923 -0.5137 0.8901 30 1 1.5614 2.4679 1.2085 31 1 3.5345 1.7703 -0.0320 32 1 1.3247 -4.2656 3.0741 33 1 2.0588 -5.0730 1.6221 34 1 4.8041 -3.0444 4.4109 35 1 5.0424 -1.6773 3.2963 36 1 4.4666 0.5831 3.9604 37 1 4.1579 2.1598 5.8266 38 1 3.7209 1.3106 8.0961 39 1 3.5837 -1.1148 8.4981 40 1 3.8852 -2.6912 6.6306 41 1 3.2603 -3.1719 0.1238 42 1 3.0262 -1.5709 0.9502 43 1 1.2666 -3.3826 -3.1931 44 1 3.2611 -2.4459 -4.3420 45 1 4.3229 -0.4131 -3.4478 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_15608174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:35:02 Heat of formation + Delta-G solvation = -61.402220 kcal Electronic energy + Delta-G solvation = -34023.041308 eV Core-core repulsion = 29488.387385 eV Total energy + Delta-G solvation = -4534.653922 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.106 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.72888 -40.90475 -40.19500 -40.03437 -38.56683 -37.92619 -37.43495 -37.11038 -33.76394 -32.78936 -32.16889 -31.89992 -28.10549 -27.47057 -26.98643 -26.49425 -25.39824 -23.59402 -23.55983 -22.38030 -22.11433 -21.11017 -19.92388 -19.23961 -18.88635 -18.54143 -18.12558 -17.80591 -17.58108 -17.02236 -16.82693 -16.73493 -16.45995 -16.18218 -15.80984 -15.45973 -15.42713 -15.04117 -14.89618 -14.69448 -14.45082 -14.37878 -14.22958 -14.17170 -13.90337 -13.83150 -13.74185 -13.64776 -13.59876 -13.48089 -13.33293 -13.26579 -12.57230 -12.25882 -12.16735 -12.08028 -11.96145 -11.85692 -11.39952 -11.15707 -10.92106 -10.69959 -10.52098 -10.03523 -9.93551 -9.87268 -4.96063 -1.21746 -0.27449 -0.05071 0.22073 0.38824 0.84818 1.24944 1.74548 1.97464 2.30586 2.31390 2.41043 2.55229 2.82849 2.86757 3.04487 3.11956 3.16110 3.33487 3.52307 3.62843 3.72595 3.77321 3.82046 3.85214 3.88851 4.03921 4.11133 4.16082 4.19475 4.24654 4.27033 4.34721 4.36679 4.51027 4.55158 4.56701 4.65734 4.67790 4.71066 4.78112 4.83182 4.94913 4.97739 5.04056 5.44089 5.44406 5.51822 5.53592 5.98284 6.08062 6.50186 6.66782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.097 4.097 3 Si 0.796 3.204 4 C 0.110 3.890 5 C 0.009 3.991 6 O -0.646 6.646 7 S 2.602 3.398 8 O -0.970 6.970 9 O -0.964 6.964 10 C -0.624 4.624 11 H 0.162 0.838 12 C -0.114 4.114 13 C 0.083 3.917 14 H 0.114 0.886 15 O -0.374 6.374 16 C 0.099 3.901 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.110 4.110 23 C -0.139 4.139 24 C -0.064 4.064 25 C -0.141 4.141 26 C 0.128 3.872 27 N -0.472 5.472 28 H 0.396 0.604 29 H 0.128 0.872 30 H -0.300 1.300 31 H -0.271 1.271 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.156 0.844 44 H 0.185 0.815 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 2.017 -3.425 7.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.206 4.206 3 Si 0.699 3.301 4 C -0.030 4.030 5 C -0.035 4.035 6 O -0.603 6.603 7 S 2.702 3.298 8 O -0.969 6.969 9 O -0.963 6.963 10 C -0.734 4.734 11 H 0.180 0.820 12 C -0.153 4.153 13 C 0.024 3.976 14 H 0.132 0.868 15 O -0.294 6.294 16 C 0.024 3.976 17 C -0.107 4.107 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.141 4.141 21 C -0.150 4.150 22 C -0.128 4.128 23 C -0.178 4.178 24 C -0.091 4.091 25 C -0.160 4.160 26 C -0.029 4.029 27 N -0.185 5.185 28 H 0.247 0.753 29 H 0.145 0.855 30 H -0.228 1.228 31 H -0.197 1.197 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.153 0.847 41 H 0.137 0.863 42 H 0.112 0.888 43 H 0.174 0.826 44 H 0.203 0.797 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.074 2.771 -2.523 8.005 hybrid contribution -0.579 -1.316 0.414 1.497 sum 6.495 1.455 -2.109 6.982 Atomic orbital electron populations 1.86500 1.15760 1.86284 1.46256 1.25725 0.86229 1.12897 0.95738 0.92813 0.79112 0.74398 0.83751 1.21912 0.91824 0.91834 0.97480 1.19050 0.88434 0.99071 0.96930 1.85708 1.44953 1.62063 1.67598 1.05165 0.74191 0.73712 0.76765 1.93587 1.40183 1.78368 1.84713 1.93600 1.69915 1.69656 1.63110 1.32083 1.10145 1.11932 1.19223 0.82036 1.23052 0.97128 0.94943 1.00148 1.22895 0.98971 0.90524 0.85222 0.86826 1.87967 1.30403 1.64518 1.46488 1.21546 0.85402 0.97802 0.92889 1.19785 1.02236 0.94096 0.94598 1.21284 0.99443 0.92972 0.99675 1.21454 1.00049 1.00655 0.93180 1.21546 0.98658 0.96233 0.97625 1.21490 0.99944 0.93603 1.00006 1.21335 0.98341 1.00782 0.92365 1.23585 0.89496 1.04053 1.00638 1.22344 0.96331 0.99068 0.91399 1.22604 0.94429 0.96753 1.02204 1.23672 0.98489 0.91083 0.89626 1.67409 1.09999 1.31824 1.09302 0.75333 0.85477 1.22832 1.19674 0.87992 0.85918 0.90313 0.91075 0.85508 0.84589 0.84266 0.84186 0.84679 0.86312 0.88797 0.82645 0.79743 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.01 11.09 -128.80 -1.43 -2.44 16 2 C -0.10 -0.08 2.18 71.24 0.16 0.07 16 3 Si 0.80 0.06 31.80 68.60 2.18 2.24 16 4 C 0.11 -0.01 4.59 42.67 0.20 0.19 16 5 C 0.01 0.02 4.46 22.60 0.10 0.12 16 6 O -0.65 -3.67 8.20 -58.79 -0.48 -4.15 16 7 S 2.60 17.27 5.15 -56.49 -0.29 16.98 16 8 O -0.97 -14.95 18.09 -118.57 -2.15 -17.10 16 9 O -0.96 -6.69 14.49 -118.57 -1.72 -8.41 16 10 C -0.62 -1.03 3.42 31.12 0.11 -0.92 16 11 H 0.16 0.40 7.68 -2.39 -0.02 0.39 16 12 C -0.11 0.13 7.50 31.12 0.23 0.37 16 13 C 0.08 -0.18 4.38 31.18 0.14 -0.04 16 14 H 0.11 -0.80 7.87 -2.39 -0.02 -0.82 16 15 O -0.37 -0.80 10.25 -148.98 -1.53 -2.33 16 16 C 0.10 -0.06 5.90 71.23 0.42 0.36 16 17 C -0.11 -0.33 5.51 -19.87 -0.11 -0.44 16 18 C -0.12 -0.41 9.70 22.27 0.22 -0.19 16 19 C -0.14 -0.39 10.05 22.27 0.22 -0.17 16 20 C -0.12 -0.26 10.05 22.27 0.22 -0.04 16 21 C -0.13 -0.27 10.05 22.27 0.22 -0.05 16 22 C -0.11 -0.28 9.70 22.27 0.22 -0.06 16 23 C -0.14 0.22 5.33 31.18 0.17 0.38 16 24 C -0.06 0.08 8.48 22.56 0.19 0.27 16 25 C -0.14 1.06 10.11 22.35 0.23 1.29 16 26 C 0.13 -0.97 11.18 84.69 0.95 -0.02 16 27 N -0.47 1.04 8.11 -183.50 -1.49 -0.44 16 28 H 0.40 -1.90 8.76 -74.06 -0.65 -2.55 16 29 H 0.13 0.16 4.06 -2.39 -0.01 0.15 16 30 H -0.30 -2.06 7.11 99.48 0.71 -1.35 16 31 H -0.27 -1.08 7.11 99.48 0.71 -0.37 16 32 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 33 H 0.12 -0.58 8.10 -2.39 -0.02 -0.60 16 34 H 0.08 -0.32 8.09 -2.39 -0.02 -0.34 16 35 H 0.07 -0.22 8.08 -2.39 -0.02 -0.24 16 36 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 37 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 38 H 0.14 -0.25 8.06 -2.91 -0.02 -0.28 16 39 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 40 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.12 -0.43 7.57 -2.39 -0.02 -0.45 16 42 H 0.09 -0.12 5.17 -2.39 -0.01 -0.13 16 43 H 0.16 -0.19 7.47 -2.91 -0.02 -0.21 16 44 H 0.19 -2.58 8.06 -2.91 -0.02 -2.61 16 45 H 0.21 -3.03 8.06 -2.91 -0.02 -3.06 16 Total: 0.00 -24.91 381.38 -2.60 -27.52 By element: Atomic # 1 Polarization: -13.40 SS G_CDS: 0.42 Total: -12.97 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 3.87 Total: 1.11 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -1.49 Total: -0.44 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -7.30 Total: -34.43 kcal Atomic # 14 Polarization: 0.06 SS G_CDS: 2.18 Total: 2.24 kcal Atomic # 16 Polarization: 17.27 SS G_CDS: -0.29 Total: 16.98 kcal Total: -24.91 -2.60 -27.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_15608174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.887 kcal (2) G-P(sol) polarization free energy of solvation -24.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds