Wall clock time and date at job start Mon Mar 8 2021 09:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.47067 * 2 1 4 4 C 1.34231 * 116.99979 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00099 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47059 * 299.99762 * 6 4 3 8 8 C 1.52994 * 109.47332 * 59.99671 * 6 4 3 9 9 C 1.52998 * 109.47346 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47325 * 300.00469 * 9 8 6 11 11 F 1.39901 * 109.47382 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46772 * 299.99819 * 10 9 8 13 13 S 1.81403 * 109.47034 * 304.99856 * 12 10 9 14 14 O 1.42102 * 110.54330 * 298.04574 * 13 12 10 15 15 O 1.42100 * 110.54214 * 74.80143 * 13 12 10 16 16 O 1.52199 * 104.44712 * 186.42526 * 13 12 10 17 17 C 1.35909 * 114.00253 * 74.61948 * 16 13 12 18 18 C 1.38708 * 120.47388 * 94.61228 * 17 16 13 19 19 C 1.50701 * 119.65721 * 359.97438 * 18 17 16 20 20 O 1.42900 * 109.47159 * 38.36224 * 19 18 17 21 21 Si 1.86295 * 109.47257 * 158.36250 * 19 18 17 22 22 N 1.31845 * 120.68461 * 179.70387 * 18 17 16 23 23 C 1.31845 * 121.77866 * 0.58586 * 22 18 17 24 24 C 1.38259 * 120.88633 * 359.70028 * 23 22 18 25 25 C 1.38530 * 119.22086 * 0.02562 * 24 23 22 26 26 C 1.52994 * 109.47292 * 59.99498 * 10 9 8 27 27 C 1.52998 * 109.47346 * 300.00490 * 26 10 9 28 28 H 1.08996 * 109.47299 * 299.99977 * 1 2 3 29 29 H 1.09000 * 109.47047 * 60.00115 * 1 2 3 30 30 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46836 * 239.99857 * 2 1 3 32 32 H 1.08995 * 109.46880 * 120.00595 * 2 1 3 33 33 H 1.08994 * 109.47427 * 300.00109 * 8 6 4 34 34 H 1.09001 * 109.47206 * 60.00502 * 8 6 4 35 35 H 1.09007 * 109.47439 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46996 * 60.00121 * 9 8 6 37 37 H 1.09000 * 109.46837 * 185.00467 * 12 10 9 38 38 H 1.08997 * 109.47397 * 64.99686 * 12 10 9 39 39 H 1.09000 * 109.47186 * 278.36293 * 19 18 17 40 40 H 0.96698 * 113.99653 * 65.67568 * 20 19 18 41 41 H 1.48502 * 110.00095 * 58.68180 * 21 19 18 42 42 H 1.48500 * 110.00401 * 180.02562 * 21 19 18 43 43 H 1.08002 * 119.55675 * 179.68211 * 23 22 18 44 44 H 1.07999 * 120.39016 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.81280 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46974 * 60.00382 * 26 10 9 47 47 H 1.08998 * 109.47192 * 179.97438 * 26 10 9 48 48 H 1.09007 * 109.47439 * 179.97438 * 27 26 10 49 49 H 1.09005 * 109.46996 * 299.99879 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5843 3.4700 -0.8896 8 6 3.4497 3.6836 1.2498 9 6 4.0351 5.0972 1.2507 10 6 5.5629 5.0166 1.2502 11 9 6.0982 6.3092 1.2504 12 6 6.0345 4.2686 2.4988 13 16 5.3529 5.0694 3.9769 14 8 5.8228 6.4064 4.0813 15 8 3.9719 4.7651 4.1169 16 8 6.0163 4.3465 5.1405 17 6 7.3176 4.6877 5.3337 18 6 7.6576 5.6776 6.2439 19 6 6.5744 6.3786 7.0225 20 8 5.5627 5.4367 7.3850 21 14 7.3040 7.1299 8.5632 22 7 8.9191 6.0078 6.4388 23 6 9.8994 5.4262 5.7763 24 6 9.6388 4.4349 4.8484 25 6 8.3273 4.0534 4.6167 26 6 6.0339 4.2703 0.0004 27 6 5.4486 2.8567 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3613 3.7407 1.2504 34 1 3.7861 3.1510 2.1394 35 1 3.6999 5.6287 2.1414 36 1 3.6991 5.6301 0.3611 37 1 7.1234 4.2882 2.5445 38 1 5.6912 3.2350 2.4546 39 1 6.1356 7.1645 6.4078 40 1 5.8621 4.7566 8.0037 41 1 8.3794 8.0878 8.2010 42 1 6.2458 7.8237 9.3403 43 1 10.9198 5.7283 5.9607 44 1 10.4480 3.9636 4.3106 45 1 8.0944 3.2822 3.8974 46 1 5.6979 4.8032 -0.8892 47 1 7.1224 4.2133 -0.0002 48 1 5.7838 2.3252 -0.8912 49 1 5.7846 2.3238 0.8891 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10177738_16464696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:30 Heat of formation + Delta-G solvation = -222.406352 kcal Electronic energy + Delta-G solvation = -39389.170800 eV Core-core repulsion = 34133.002230 eV Total energy + Delta-G solvation = -5256.168570 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.05377 -42.76587 -41.85404 -40.26953 -39.72855 -38.30771 -37.87991 -37.61905 -37.20786 -34.11415 -33.57035 -32.61067 -32.28749 -32.23697 -29.44332 -27.70260 -25.61952 -25.33921 -24.37055 -23.74323 -23.62250 -22.21297 -21.86609 -20.67469 -19.60832 -19.06258 -18.98272 -18.77244 -18.57680 -18.15044 -17.72590 -17.61309 -17.32818 -17.23767 -16.79139 -16.44622 -16.18169 -16.02475 -15.58264 -15.50015 -15.16196 -15.08531 -14.92911 -14.79021 -14.61708 -14.50074 -14.20306 -14.04283 -13.98126 -13.85950 -13.78891 -13.70257 -13.55964 -13.25397 -13.21124 -13.14270 -12.94565 -12.93365 -12.81532 -12.58966 -12.48186 -12.40483 -12.03632 -11.88100 -11.77728 -11.54371 -11.41659 -11.38469 -11.28052 -11.10118 -10.59968 -10.13414 -4.89433 -1.28479 -0.38109 -0.31609 0.87831 1.11176 1.30514 1.55404 1.85303 2.12003 2.26270 2.32623 2.67234 2.71044 2.77441 2.91647 3.02754 3.07150 3.16990 3.27443 3.36151 3.50705 3.52112 3.56028 3.56972 3.69746 3.78514 3.82841 3.92777 3.96182 3.97716 4.01609 4.06295 4.07365 4.25780 4.31948 4.39377 4.42878 4.50444 4.54785 4.58746 4.59671 4.63954 4.67714 4.70491 4.76547 4.78605 4.91331 4.98992 5.01598 5.21497 5.42140 6.37650 6.56101 6.67412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.467 3.533 5 O -0.505 6.505 6 C -0.087 4.087 7 H 0.119 0.881 8 C -0.111 4.111 9 C -0.167 4.167 10 C 0.142 3.858 11 F -0.188 7.188 12 C -0.702 4.702 13 S 2.596 3.404 14 O -0.935 6.935 15 O -0.907 6.907 16 O -0.639 6.639 17 C 0.035 3.965 18 C 0.136 3.864 19 C -0.092 4.092 20 O -0.529 6.529 21 Si 0.733 3.267 22 N -0.456 5.456 23 C 0.127 3.873 24 C -0.149 4.149 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.160 0.840 39 H 0.141 0.859 40 H 0.381 0.619 41 H -0.246 1.246 42 H -0.257 1.257 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 -4.244 -1.521 5.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.310 3.690 5 O -0.393 6.393 6 C -0.106 4.106 7 H 0.137 0.863 8 C -0.149 4.149 9 C -0.204 4.204 10 C 0.122 3.878 11 F -0.168 7.168 12 C -0.826 4.826 13 S 2.689 3.311 14 O -0.933 6.933 15 O -0.905 6.905 16 O -0.596 6.596 17 C -0.009 4.009 18 C -0.004 4.004 19 C -0.202 4.202 20 O -0.333 6.333 21 Si 0.632 3.368 22 N -0.168 5.168 23 C -0.030 4.030 24 C -0.169 4.169 25 C -0.122 4.122 26 C -0.167 4.167 27 C -0.145 4.145 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.158 0.842 40 H 0.229 0.771 41 H -0.169 1.169 42 H -0.182 1.182 43 H 0.194 0.806 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.444 -2.527 -0.371 4.288 hybrid contribution -0.023 -1.355 -2.002 2.418 sum 3.421 -3.883 -2.373 5.693 Atomic orbital electron populations 1.21829 0.92225 1.03316 1.03773 1.23107 0.95713 0.79685 1.02771 1.86507 1.24136 1.32898 1.83584 1.23564 0.80882 0.92304 0.72290 1.90689 1.60489 1.43025 1.45083 1.21230 0.96518 0.90423 1.02413 0.86300 1.21558 1.03315 0.93692 0.96293 1.22555 0.92083 0.99416 1.06389 1.20397 0.93977 0.78941 0.94450 1.93006 1.87640 1.38793 1.97405 1.31837 1.15375 1.15932 1.19458 1.05717 0.75597 0.74882 0.74948 1.93660 1.81001 1.35282 1.83367 1.93678 1.28768 1.84377 1.83716 1.85754 1.30372 1.77423 1.66064 1.18764 0.79148 1.00331 1.02664 1.22146 0.93430 0.91633 0.93226 1.25482 0.90573 0.95838 1.08260 1.86565 1.35381 1.43635 1.67729 0.94133 0.79614 0.84777 0.78298 1.67410 0.98721 1.25943 1.24745 1.23132 0.99066 0.90806 0.90027 1.22199 0.96338 0.98800 0.99570 1.22019 0.92769 0.98627 0.98796 1.22065 1.02543 0.95734 0.96312 1.21531 0.91854 0.96212 1.04927 0.91219 0.91341 0.89971 0.91068 0.91020 0.88112 0.90565 0.89612 0.87541 0.83480 0.82211 0.84169 0.77129 1.16935 1.18240 0.80616 0.82560 0.82843 0.89003 0.89209 0.89238 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 10.29 37.16 0.38 0.64 16 2 C 0.06 0.00 6.19 37.16 0.23 0.23 16 3 O -0.35 -0.44 10.12 -39.26 -0.40 -0.84 16 4 C 0.47 0.62 7.26 36.00 0.26 0.88 16 5 O -0.51 -1.92 15.73 -18.75 -0.29 -2.22 16 6 C -0.09 0.12 2.63 -91.78 -0.24 -0.12 16 7 H 0.12 -0.39 8.14 -51.93 -0.42 -0.81 16 8 C -0.11 0.08 4.60 -26.74 -0.12 -0.04 16 9 C -0.17 0.05 4.63 -26.73 -0.12 -0.07 16 10 C 0.14 -0.04 1.11 -90.62 -0.10 -0.14 16 11 F -0.19 -0.43 16.13 2.25 0.04 -0.40 16 12 C -0.70 0.70 4.18 37.16 0.16 0.86 16 13 S 2.60 7.90 4.20 -107.50 -0.45 7.44 16 14 O -0.93 -5.19 14.69 -67.04 -0.98 -6.17 16 15 O -0.91 -4.74 15.37 -67.04 -1.03 -5.77 16 16 O -0.64 -1.49 8.16 -54.81 -0.45 -1.93 16 17 C 0.04 0.05 4.60 -39.07 -0.18 -0.13 16 18 C 0.14 0.29 5.71 -82.41 -0.47 -0.18 16 19 C -0.09 -0.24 2.40 36.01 0.09 -0.16 16 20 O -0.53 -1.23 11.13 -56.58 -0.63 -1.86 16 21 Si 0.73 0.61 31.65 -169.99 -5.38 -4.77 16 22 N -0.46 -0.49 8.13 -9.35 -0.08 -0.56 16 23 C 0.13 -0.26 11.18 -17.54 -0.20 -0.46 16 24 C -0.15 0.50 10.11 -39.47 -0.40 0.11 16 25 C -0.09 0.18 8.51 -39.14 -0.33 -0.15 16 26 C -0.13 0.32 5.19 -26.74 -0.14 0.18 16 27 C -0.11 0.23 4.22 -26.73 -0.11 0.11 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 30 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 31 H 0.07 0.00 8.13 -51.93 -0.42 -0.43 16 32 H 0.07 0.01 8.13 -51.93 -0.42 -0.42 16 33 H 0.10 -0.11 8.11 -51.93 -0.42 -0.53 16 34 H 0.08 -0.03 5.95 -51.93 -0.31 -0.34 16 35 H 0.09 0.10 5.69 -51.93 -0.30 -0.19 16 36 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 37 H 0.15 -0.50 5.74 -51.92 -0.30 -0.80 16 38 H 0.16 -0.50 4.83 -51.93 -0.25 -0.75 16 39 H 0.14 0.59 7.08 -51.93 -0.37 0.22 16 40 H 0.38 -0.82 8.59 45.56 0.39 -0.42 16 41 H -0.25 -0.82 7.11 56.52 0.40 -0.42 16 42 H -0.26 -0.83 7.11 56.52 0.40 -0.42 16 43 H 0.18 -0.92 8.06 -52.49 -0.42 -1.35 16 44 H 0.16 -1.04 8.06 -52.49 -0.42 -1.46 16 45 H 0.15 -0.78 6.90 -52.49 -0.36 -1.15 16 46 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 47 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 48 H 0.09 -0.19 8.10 -51.93 -0.42 -0.61 16 49 H 0.08 -0.17 6.28 -51.93 -0.33 -0.49 16 LS Contribution 398.95 15.07 6.01 6.01 Total: 0.00 -12.27 398.95 -11.45 -23.73 By element: Atomic # 1 Polarization: -7.70 SS G_CDS: -6.51 Total: -14.21 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.30 Total: 1.56 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.56 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -3.78 Total: -18.80 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.04 Total: -0.40 kcal Atomic # 14 Polarization: 0.61 SS G_CDS: -5.38 Total: -4.77 kcal Atomic # 16 Polarization: 7.90 SS G_CDS: -0.45 Total: 7.44 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -12.27 -11.45 -23.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_16464696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.680 kcal (2) G-P(sol) polarization free energy of solvation -12.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds