Wall clock time and date at job start Mon Mar 8 2021 09:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.47067 * 2 1 4 4 C 1.34231 * 116.99979 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99926 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00099 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.47059 * 299.99762 * 6 4 3 8 8 C 1.52994 * 109.47332 * 59.99671 * 6 4 3 9 9 C 1.52998 * 109.47346 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47325 * 300.00469 * 9 8 6 11 11 F 1.39901 * 109.47382 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46772 * 299.99819 * 10 9 8 13 13 S 1.81403 * 109.47034 * 304.99856 * 12 10 9 14 14 O 1.42102 * 110.54330 * 298.04574 * 13 12 10 15 15 O 1.42100 * 110.54214 * 74.80143 * 13 12 10 16 16 O 1.52199 * 104.44712 * 186.42526 * 13 12 10 17 17 C 1.35909 * 114.00253 * 74.61948 * 16 13 12 18 18 C 1.38708 * 120.47388 * 94.61228 * 17 16 13 19 19 C 1.50701 * 119.65721 * 359.97438 * 18 17 16 20 20 O 1.42900 * 109.47159 * 38.36224 * 19 18 17 21 21 Si 1.86295 * 109.47257 * 158.36250 * 19 18 17 22 22 N 1.31845 * 120.68461 * 179.70387 * 18 17 16 23 23 C 1.31845 * 121.77866 * 0.58586 * 22 18 17 24 24 C 1.38259 * 120.88633 * 359.70028 * 23 22 18 25 25 C 1.38530 * 119.22086 * 0.02562 * 24 23 22 26 26 C 1.52994 * 109.47292 * 59.99498 * 10 9 8 27 27 C 1.52998 * 109.47346 * 300.00490 * 26 10 9 28 28 H 1.08996 * 109.47299 * 299.99977 * 1 2 3 29 29 H 1.09000 * 109.47047 * 60.00115 * 1 2 3 30 30 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46836 * 239.99857 * 2 1 3 32 32 H 1.08995 * 109.46880 * 120.00595 * 2 1 3 33 33 H 1.08994 * 109.47427 * 300.00109 * 8 6 4 34 34 H 1.09001 * 109.47206 * 60.00502 * 8 6 4 35 35 H 1.09007 * 109.47439 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46996 * 60.00121 * 9 8 6 37 37 H 1.09000 * 109.46837 * 185.00467 * 12 10 9 38 38 H 1.08997 * 109.47397 * 64.99686 * 12 10 9 39 39 H 1.09000 * 109.47186 * 278.36293 * 19 18 17 40 40 H 0.96698 * 113.99653 * 65.67568 * 20 19 18 41 41 H 1.48502 * 110.00095 * 58.68180 * 21 19 18 42 42 H 1.48500 * 110.00401 * 180.02562 * 21 19 18 43 43 H 1.08002 * 119.55675 * 179.68211 * 23 22 18 44 44 H 1.07999 * 120.39016 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.81280 * 179.97438 * 25 24 23 46 46 H 1.09005 * 109.46974 * 60.00382 * 26 10 9 47 47 H 1.08998 * 109.47192 * 179.97438 * 26 10 9 48 48 H 1.09007 * 109.47439 * 179.97438 * 27 26 10 49 49 H 1.09005 * 109.46996 * 299.99879 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5843 3.4700 -0.8896 8 6 3.4497 3.6836 1.2498 9 6 4.0351 5.0972 1.2507 10 6 5.5629 5.0166 1.2502 11 9 6.0982 6.3092 1.2504 12 6 6.0345 4.2686 2.4988 13 16 5.3529 5.0694 3.9769 14 8 5.8228 6.4064 4.0813 15 8 3.9719 4.7651 4.1169 16 8 6.0163 4.3465 5.1405 17 6 7.3176 4.6877 5.3337 18 6 7.6576 5.6776 6.2439 19 6 6.5744 6.3786 7.0225 20 8 5.5627 5.4367 7.3850 21 14 7.3040 7.1299 8.5632 22 7 8.9191 6.0078 6.4388 23 6 9.8994 5.4262 5.7763 24 6 9.6388 4.4349 4.8484 25 6 8.3273 4.0534 4.6167 26 6 6.0339 4.2703 0.0004 27 6 5.4486 2.8567 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3613 3.7407 1.2504 34 1 3.7861 3.1510 2.1394 35 1 3.6999 5.6287 2.1414 36 1 3.6991 5.6301 0.3611 37 1 7.1234 4.2882 2.5445 38 1 5.6912 3.2350 2.4546 39 1 6.1356 7.1645 6.4078 40 1 5.8621 4.7566 8.0037 41 1 8.3794 8.0878 8.2010 42 1 6.2458 7.8237 9.3403 43 1 10.9198 5.7283 5.9607 44 1 10.4480 3.9636 4.3106 45 1 8.0944 3.2822 3.8974 46 1 5.6979 4.8032 -0.8892 47 1 7.1224 4.2133 -0.0002 48 1 5.7838 2.3252 -0.8912 49 1 5.7846 2.3238 0.8891 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_16464696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:28 Heat of formation + Delta-G solvation = -224.261753 kcal Electronic energy + Delta-G solvation = -39389.251256 eV Core-core repulsion = 34133.002230 eV Total energy + Delta-G solvation = -5256.249026 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -49.10594 -42.74108 -41.89361 -40.24530 -39.68048 -38.54294 -37.99902 -37.71763 -37.44416 -34.00635 -33.50933 -32.51867 -32.20913 -32.14613 -29.38605 -27.72375 -25.56195 -25.25768 -24.25195 -23.69883 -23.58725 -22.24907 -21.87525 -20.60801 -19.70794 -19.09095 -19.02989 -18.81202 -18.60284 -18.11250 -17.76262 -17.64457 -17.34651 -17.20952 -16.76321 -16.58160 -16.21567 -16.07991 -15.54468 -15.45650 -15.14955 -15.03510 -14.87987 -14.77998 -14.55032 -14.42434 -14.20675 -14.18363 -14.00788 -13.82477 -13.71949 -13.61598 -13.57668 -13.48245 -13.36767 -13.20099 -12.93619 -12.85246 -12.76217 -12.53605 -12.49852 -12.35962 -12.13644 -11.99609 -11.66769 -11.54678 -11.44508 -11.31504 -11.20285 -11.07887 -10.58355 -10.10357 -5.02697 -1.37287 -0.31164 -0.16952 0.80926 1.04402 1.19153 1.58556 1.70617 1.97025 2.25687 2.37027 2.62659 2.72920 2.82959 2.99208 3.06266 3.12748 3.27388 3.37660 3.52769 3.58545 3.59490 3.68042 3.76063 3.80451 3.87462 3.95396 3.96379 4.02112 4.09840 4.14744 4.21106 4.22784 4.30058 4.38301 4.43632 4.55274 4.59548 4.70281 4.71593 4.77601 4.81412 4.82091 4.85552 4.87833 4.95970 5.05407 5.11624 5.18321 5.40332 5.41995 6.48157 6.61143 6.63805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.466 3.534 5 O -0.533 6.533 6 C -0.082 4.082 7 H 0.142 0.858 8 C -0.111 4.111 9 C -0.173 4.173 10 C 0.133 3.867 11 F -0.205 7.205 12 C -0.684 4.684 13 S 2.585 3.415 14 O -0.973 6.973 15 O -0.947 6.947 16 O -0.644 6.644 17 C 0.008 3.992 18 C 0.112 3.888 19 C -0.109 4.109 20 O -0.547 6.547 21 Si 0.827 3.173 22 N -0.481 5.481 23 C 0.122 3.878 24 C -0.132 4.132 25 C -0.096 4.096 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.124 0.876 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.112 0.888 40 H 0.397 0.603 41 H -0.279 1.279 42 H -0.293 1.293 43 H 0.208 0.792 44 H 0.200 0.800 45 H 0.188 0.812 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.095 0.905 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -5.901 -3.302 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.310 3.690 5 O -0.423 6.423 6 C -0.101 4.101 7 H 0.159 0.841 8 C -0.148 4.148 9 C -0.211 4.211 10 C 0.114 3.886 11 F -0.185 7.185 12 C -0.812 4.812 13 S 2.684 3.316 14 O -0.971 6.971 15 O -0.945 6.945 16 O -0.601 6.601 17 C -0.036 4.036 18 C -0.028 4.028 19 C -0.217 4.217 20 O -0.354 6.354 21 Si 0.729 3.271 22 N -0.194 5.194 23 C -0.036 4.036 24 C -0.151 4.151 25 C -0.123 4.123 26 C -0.158 4.158 27 C -0.144 4.144 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.129 0.871 40 H 0.248 0.752 41 H -0.205 1.205 42 H -0.222 1.222 43 H 0.225 0.775 44 H 0.217 0.783 45 H 0.205 0.795 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.656 -4.187 -2.121 7.350 hybrid contribution -0.662 -0.865 -1.499 1.853 sum 4.993 -5.052 -3.620 7.973 Atomic orbital electron populations 1.21835 0.90964 1.04242 1.03682 1.23256 0.96783 0.79308 1.02617 1.86521 1.24370 1.33533 1.83376 1.24101 0.80634 0.93026 0.71253 1.90670 1.60945 1.44118 1.46523 1.21324 0.97153 0.88786 1.02807 0.84068 1.21531 1.03322 0.93458 0.96498 1.22622 0.92590 0.99613 1.06262 1.20672 0.93787 0.78470 0.95700 1.92977 1.87815 1.40200 1.97532 1.31701 1.17011 1.16342 1.16103 1.05726 0.75155 0.74625 0.76123 1.93611 1.81258 1.37796 1.84471 1.93622 1.31259 1.84747 1.84837 1.85720 1.31391 1.76839 1.66163 1.19124 0.79202 1.01410 1.03899 1.21992 0.93673 0.92659 0.94435 1.25619 0.90962 0.95841 1.09274 1.86513 1.36062 1.44280 1.68515 0.93106 0.76029 0.82323 0.75639 1.67341 0.98806 1.26995 1.26219 1.23820 0.99631 0.90609 0.89539 1.22708 0.96740 0.97368 0.98264 1.22502 0.92471 0.98711 0.98617 1.22070 1.03544 0.94963 0.95226 1.21558 0.91007 0.96513 1.05332 0.91492 0.91186 0.88559 0.91043 0.91386 0.88269 0.91249 0.91820 0.85717 0.80515 0.79883 0.87118 0.75243 1.20538 1.22173 0.77517 0.78276 0.79500 0.87714 0.87466 0.88664 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.50 10.29 71.98 0.74 1.24 16 2 C 0.05 0.03 6.19 71.98 0.45 0.47 16 3 O -0.36 -0.98 10.12 -51.42 -0.52 -1.50 16 4 C 0.47 1.10 7.26 71.23 0.52 1.61 16 5 O -0.53 -3.93 15.73 21.95 0.35 -3.58 16 6 C -0.08 0.32 2.63 -11.54 -0.03 0.29 16 7 H 0.14 -1.19 8.14 -2.38 -0.02 -1.21 16 8 C -0.11 0.14 4.60 30.59 0.14 0.29 16 9 C -0.17 0.04 4.63 30.59 0.14 0.18 16 10 C 0.13 -0.19 1.11 -10.79 -0.01 -0.20 16 11 F -0.20 -0.93 16.13 44.97 0.73 -0.21 16 12 C -0.68 1.93 4.18 71.98 0.30 2.24 16 13 S 2.59 20.57 4.20 -56.49 -0.24 20.33 16 14 O -0.97 -13.73 14.69 -118.57 -1.74 -15.47 16 15 O -0.95 -12.77 15.37 -118.57 -1.82 -14.60 16 16 O -0.64 -4.02 8.16 -58.72 -0.48 -4.50 16 17 C 0.01 0.02 4.60 22.60 0.10 0.13 16 18 C 0.11 0.65 5.71 42.67 0.24 0.89 16 19 C -0.11 -0.90 2.40 71.24 0.17 -0.73 16 20 O -0.55 -4.19 11.13 -128.57 -1.43 -5.62 16 21 Si 0.83 3.22 31.65 68.60 2.17 5.39 16 22 N -0.48 -1.22 8.13 -183.49 -1.49 -2.72 16 23 C 0.12 -0.71 11.18 84.70 0.95 0.24 16 24 C -0.13 1.30 10.11 22.34 0.23 1.53 16 25 C -0.10 0.57 8.51 22.56 0.19 0.76 16 26 C -0.12 0.89 5.19 30.59 0.16 1.05 16 27 C -0.11 0.67 4.22 30.59 0.13 0.80 16 28 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 31 H 0.07 0.01 8.13 -2.38 -0.02 -0.01 16 32 H 0.07 0.06 8.13 -2.39 -0.02 0.04 16 33 H 0.10 -0.12 8.11 -2.39 -0.02 -0.14 16 34 H 0.07 -0.01 5.95 -2.39 -0.01 -0.02 16 35 H 0.06 0.30 5.69 -2.38 -0.01 0.28 16 36 H 0.12 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H 0.18 -1.63 5.74 -2.39 -0.01 -1.64 16 38 H 0.18 -1.39 4.83 -2.39 -0.01 -1.40 16 39 H 0.11 1.46 7.08 -2.39 -0.02 1.45 16 40 H 0.40 -0.75 8.59 -74.06 -0.64 -1.39 16 41 H -0.28 -2.52 7.11 99.48 0.71 -1.81 16 42 H -0.29 -2.73 7.11 99.48 0.71 -2.02 16 43 H 0.21 -2.73 8.06 -2.91 -0.02 -2.75 16 44 H 0.20 -3.70 8.06 -2.91 -0.02 -3.73 16 45 H 0.19 -2.57 6.90 -2.91 -0.02 -2.59 16 46 H 0.10 -0.99 8.14 -2.38 -0.02 -1.01 16 47 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 48 H 0.09 -0.63 8.10 -2.38 -0.02 -0.65 16 49 H 0.08 -0.52 6.28 -2.38 -0.01 -0.54 16 Total: 0.00 -33.98 398.95 0.34 -33.63 By element: Atomic # 1 Polarization: -22.34 SS G_CDS: 0.41 Total: -21.93 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.41 Total: 10.77 kcal Atomic # 7 Polarization: -1.22 SS G_CDS: -1.49 Total: -2.72 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -5.65 Total: -45.27 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.73 Total: -0.21 kcal Atomic # 14 Polarization: 3.22 SS G_CDS: 2.17 Total: 5.39 kcal Atomic # 16 Polarization: 20.57 SS G_CDS: -0.24 Total: 20.33 kcal Total: -33.98 0.34 -33.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_16464696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.630 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds