Wall clock time and date at job start Mon Mar 8 2021 09:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45209 * 109.46987 * 2 1 4 4 C 1.34229 * 116.99833 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99865 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99615 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.47534 * 59.99805 * 6 4 3 8 8 C 1.52995 * 109.46911 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47379 * 179.97438 * 8 6 4 10 10 C 1.53010 * 109.47046 * 300.00384 * 9 8 6 11 11 F 1.39895 * 109.46902 * 299.99752 * 10 9 8 12 12 C 1.53001 * 109.47046 * 180.02562 * 10 9 8 13 13 S 1.81396 * 109.46932 * 184.99992 * 12 10 9 14 14 O 1.42098 * 110.54243 * 290.87016 * 13 12 10 15 15 O 1.42101 * 110.54494 * 67.61955 * 13 12 10 16 16 O 1.52198 * 104.44906 * 179.24409 * 13 12 10 17 17 C 1.35912 * 113.99741 * 73.63494 * 16 13 12 18 18 C 1.38708 * 120.46867 * 260.86884 * 17 16 13 19 19 C 1.50698 * 119.66184 * 0.02562 * 18 17 16 20 20 O 1.42903 * 109.47136 * 326.75298 * 19 18 17 21 21 Si 1.86296 * 109.47304 * 206.74911 * 19 18 17 22 22 N 1.31841 * 120.67690 * 179.70826 * 18 17 16 23 23 C 1.31847 * 121.78575 * 0.58497 * 22 18 17 24 24 C 1.38251 * 120.88178 * 359.70317 * 23 22 18 25 25 C 1.38529 * 119.22554 * 0.02562 * 24 23 22 26 26 C 1.52999 * 109.46837 * 59.99622 * 10 9 8 27 27 C 1.52993 * 109.47205 * 299.99624 * 6 4 3 28 28 H 1.09000 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47660 * 300.00132 * 1 2 3 30 30 H 1.09001 * 109.47057 * 60.00146 * 1 2 3 31 31 H 1.08991 * 109.47314 * 239.99944 * 2 1 3 32 32 H 1.09001 * 109.47175 * 119.99076 * 2 1 3 33 33 H 1.09001 * 109.47207 * 299.99987 * 8 6 4 34 34 H 1.09000 * 109.47367 * 60.00231 * 8 6 4 35 35 H 1.09001 * 109.47138 * 59.99753 * 9 8 6 36 36 H 1.09001 * 109.47519 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46541 * 304.99745 * 12 10 9 38 38 H 1.08997 * 109.47352 * 64.99739 * 12 10 9 39 39 H 1.08999 * 109.46951 * 86.74730 * 19 18 17 40 40 H 0.96704 * 113.99779 * 299.99745 * 20 19 18 41 41 H 1.48500 * 109.99642 * 58.68407 * 21 19 18 42 42 H 1.48499 * 109.99802 * 179.97438 * 21 19 18 43 43 H 1.08000 * 119.55984 * 179.73199 * 23 22 18 44 44 H 1.08003 * 120.38839 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.81544 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.46983 * 60.00393 * 26 10 9 47 47 H 1.09001 * 109.46699 * 180.02562 * 26 10 9 48 48 H 1.09007 * 109.47509 * 300.00116 * 27 6 4 49 49 H 1.08998 * 109.47457 * 60.00425 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5850 3.4700 0.8887 8 6 5.4485 2.8575 -0.0010 9 6 6.0333 4.2713 -0.0023 10 6 5.5617 5.0172 -1.2523 11 9 5.9929 4.3332 -2.3939 12 6 6.1470 6.4308 -1.2539 13 16 5.4717 7.3633 -2.6556 14 8 5.9721 6.8508 -3.8829 15 8 4.0827 7.6015 -2.4732 16 8 6.1075 8.7410 -2.5370 17 6 7.4205 8.7757 -2.8865 18 6 8.4085 8.7434 -1.9135 19 6 8.0207 8.6686 -0.4591 20 8 6.7990 9.3811 -0.2547 21 14 9.3652 9.4296 0.5820 22 7 9.6834 8.7711 -2.2482 23 6 10.0696 8.8415 -3.5069 24 6 9.1431 8.8832 -4.5321 25 6 7.7926 8.8506 -4.2251 26 6 4.0338 5.0972 -1.2523 27 6 3.4487 3.6840 -1.2504 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.7844 2.3258 0.8892 34 1 5.7845 2.3250 -0.8908 35 1 5.6973 4.8043 0.8872 36 1 7.1218 4.2143 -0.0027 37 1 5.8849 6.9335 -0.3229 38 1 7.2318 6.3748 -1.3436 39 1 7.8854 7.6258 -0.1724 40 1 6.8460 10.3180 -0.4896 41 1 9.5811 10.8425 0.1790 42 1 8.9945 9.3627 2.0184 43 1 11.1238 8.8666 -3.7401 44 1 9.4683 8.9412 -5.5604 45 1 7.0469 8.8822 -5.0057 46 1 3.6979 5.6301 -0.3628 47 1 3.6978 5.6281 -2.1430 48 1 3.7844 3.1516 -2.1404 49 1 2.3602 3.7411 -1.2501 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10177738_16464698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:34 Heat of formation + Delta-G solvation = -225.598548 kcal Electronic energy + Delta-G solvation = -39056.544533 eV Core-core repulsion = 33800.237539 eV Total energy + Delta-G solvation = -5256.306994 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.04430 -42.83046 -41.64850 -40.30663 -39.15013 -38.40663 -38.17260 -37.50969 -37.24944 -34.30882 -33.94988 -32.67073 -32.33195 -32.17315 -29.26967 -27.78123 -25.54381 -25.08201 -24.27532 -23.78132 -23.54689 -22.12841 -21.75177 -20.90890 -19.76833 -19.14810 -18.91552 -18.77438 -18.65821 -17.90253 -17.66398 -17.59146 -17.28337 -17.11263 -16.91347 -16.66119 -16.31256 -16.10821 -15.70720 -15.29452 -15.02657 -15.02202 -14.95630 -14.75631 -14.55647 -14.42284 -14.24606 -14.10900 -13.93060 -13.82005 -13.75688 -13.64288 -13.47648 -13.27329 -13.24786 -13.21281 -13.05910 -12.86327 -12.85774 -12.60370 -12.47308 -12.28569 -12.03683 -11.97034 -11.78445 -11.48430 -11.42622 -11.29481 -11.20289 -11.05920 -10.92411 -10.27593 -4.87620 -1.27760 -0.46298 -0.23405 0.83845 1.10674 1.22076 1.61745 1.64222 1.85266 2.19478 2.30531 2.60353 2.65334 2.77862 2.86728 2.99976 3.16000 3.25154 3.33802 3.46615 3.49008 3.52614 3.60147 3.68674 3.72371 3.88294 3.94606 3.96854 3.98016 4.01355 4.05578 4.10322 4.17611 4.23738 4.30849 4.40409 4.45423 4.51387 4.59785 4.67134 4.68603 4.71956 4.74157 4.81972 4.85912 4.90605 5.01736 5.03954 5.16765 5.18386 5.50094 6.06241 6.37867 6.77812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.504 6.504 6 C -0.083 4.083 7 H 0.115 0.885 8 C -0.109 4.109 9 C -0.128 4.128 10 C 0.137 3.863 11 F -0.190 7.190 12 C -0.684 4.684 13 S 2.598 3.402 14 O -0.941 6.941 15 O -0.914 6.914 16 O -0.641 6.641 17 C 0.022 3.978 18 C 0.101 3.899 19 C -0.101 4.101 20 O -0.523 6.523 21 Si 0.736 3.264 22 N -0.452 5.452 23 C 0.128 3.872 24 C -0.152 4.152 25 C -0.044 4.044 26 C -0.171 4.171 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.167 0.833 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.387 0.613 41 H -0.262 1.262 42 H -0.255 1.255 43 H 0.179 0.821 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 1.677 1.094 4.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.309 3.691 5 O -0.391 6.391 6 C -0.102 4.102 7 H 0.133 0.867 8 C -0.147 4.147 9 C -0.167 4.167 10 C 0.118 3.882 11 F -0.170 7.170 12 C -0.809 4.809 13 S 2.692 3.308 14 O -0.940 6.940 15 O -0.912 6.912 16 O -0.598 6.598 17 C -0.022 4.022 18 C -0.039 4.039 19 C -0.210 4.210 20 O -0.330 6.330 21 Si 0.634 3.366 22 N -0.164 5.164 23 C -0.030 4.030 24 C -0.171 4.171 25 C -0.071 4.071 26 C -0.208 4.208 27 C -0.148 4.148 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.185 0.815 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.236 0.764 41 H -0.186 1.186 42 H -0.180 1.180 43 H 0.196 0.804 44 H 0.175 0.825 45 H 0.175 0.825 46 H 0.123 0.877 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.893 1.686 1.983 4.683 hybrid contribution -1.286 0.295 -0.776 1.530 sum 2.607 1.981 1.207 3.490 Atomic orbital electron populations 1.21823 0.92308 1.03259 1.03687 1.23087 0.95612 0.79822 1.02755 1.86504 1.24310 1.32776 1.83762 1.23599 0.80745 0.92415 0.72293 1.90690 1.60463 1.43047 1.44890 1.21172 0.96697 0.90208 1.02096 0.86718 1.21480 0.91644 0.96389 1.05145 1.22106 1.02571 0.95896 0.96105 1.20494 0.94802 0.87524 0.85390 1.92971 1.91140 1.81054 1.51847 1.31720 1.14354 1.09841 1.24987 1.05504 0.75415 0.73641 0.76195 1.93673 1.80489 1.79333 1.40487 1.93666 1.28689 1.82086 1.86788 1.85743 1.29421 1.56960 1.87650 1.18846 0.78813 1.10607 0.93965 1.22081 0.88625 0.96481 0.96762 1.25446 0.97505 1.03984 0.94023 1.86537 1.31366 1.27104 1.87967 0.93396 0.83910 0.82798 0.76463 1.67132 1.15070 1.12828 1.21412 1.23130 1.01504 0.91595 0.86728 1.22299 0.92010 1.00281 1.02532 1.22079 0.98357 0.91828 0.94868 1.22683 0.91995 0.99515 1.06643 1.21485 1.02432 0.93994 0.96919 0.90019 0.91367 0.91317 0.91075 0.91109 0.89606 0.89782 0.88973 0.89190 0.81544 0.83599 0.84696 0.76371 1.18579 1.17978 0.80426 0.82497 0.82461 0.87692 0.88850 0.90129 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 10.29 37.16 0.38 0.58 16 2 C 0.06 0.04 6.19 37.16 0.23 0.27 16 3 O -0.36 -0.69 10.12 -39.25 -0.40 -1.09 16 4 C 0.47 1.11 7.25 36.00 0.26 1.38 16 5 O -0.50 -2.63 15.73 -18.75 -0.29 -2.92 16 6 C -0.08 0.03 2.63 -91.78 -0.24 -0.21 16 7 H 0.11 -0.28 8.14 -51.93 -0.42 -0.71 16 8 C -0.11 0.04 4.37 -26.73 -0.12 -0.07 16 9 C -0.13 0.27 5.00 -26.73 -0.13 0.13 16 10 C 0.14 -0.02 0.89 -90.61 -0.08 -0.10 16 11 F -0.19 -0.48 15.36 2.25 0.03 -0.44 16 12 C -0.68 0.76 3.32 37.16 0.12 0.88 16 13 S 2.60 5.89 4.42 -107.50 -0.48 5.42 16 14 O -0.94 -4.06 15.51 -67.04 -1.04 -5.10 16 15 O -0.91 -4.23 15.58 -67.04 -1.04 -5.27 16 16 O -0.64 -0.96 7.94 -54.97 -0.44 -1.40 16 17 C 0.02 0.01 4.78 -39.07 -0.19 -0.17 16 18 C 0.10 -0.06 5.49 -82.42 -0.45 -0.51 16 19 C -0.10 0.18 1.75 36.00 0.06 0.24 16 20 O -0.52 0.59 10.32 -57.60 -0.59 0.00 16 21 Si 0.74 -1.20 31.83 -169.99 -5.41 -6.62 16 22 N -0.45 0.57 8.28 -9.35 -0.08 0.49 16 23 C 0.13 -0.38 11.18 -17.54 -0.20 -0.57 16 24 C -0.15 0.41 10.11 -39.47 -0.40 0.02 16 25 C -0.04 0.01 8.71 -39.14 -0.34 -0.33 16 26 C -0.17 0.00 4.31 -26.76 -0.12 -0.11 16 27 C -0.11 0.01 5.01 -26.76 -0.13 -0.12 16 28 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 29 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.07 0.06 8.13 -51.93 -0.42 -0.36 16 32 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 33 H 0.09 -0.05 8.10 -51.93 -0.42 -0.47 16 34 H 0.08 0.11 7.76 -51.93 -0.40 -0.29 16 35 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 36 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 37 H 0.17 -0.58 7.28 -51.92 -0.38 -0.95 16 38 H 0.15 -0.42 6.12 -51.93 -0.32 -0.73 16 39 H 0.14 -0.52 5.27 -51.93 -0.27 -0.79 16 40 H 0.39 -1.15 8.70 45.56 0.40 -0.75 16 41 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 42 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 43 H 0.18 -1.11 8.06 -52.49 -0.42 -1.54 16 44 H 0.16 -0.87 8.06 -52.48 -0.42 -1.29 16 45 H 0.16 -0.15 7.89 -52.48 -0.41 -0.56 16 46 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 47 H 0.09 0.13 5.37 -51.93 -0.28 -0.15 16 48 H 0.08 0.07 7.80 -51.93 -0.41 -0.34 16 49 H 0.09 -0.08 8.11 -51.93 -0.42 -0.50 16 LS Contribution 402.36 15.07 6.06 6.06 Total: 0.00 -11.06 402.36 -11.77 -22.84 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: -6.76 Total: -13.25 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.34 Total: 1.28 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -3.81 Total: -15.78 kcal Atomic # 9 Polarization: -0.48 SS G_CDS: 0.03 Total: -0.44 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.41 Total: -6.62 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -0.48 Total: 5.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -11.06 -11.77 -22.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_16464698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.761 kcal (2) G-P(sol) polarization free energy of solvation -11.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds