Wall clock time and date at job start Mon Mar 8 2021 09:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45209 * 109.46987 * 2 1 4 4 C 1.34229 * 116.99833 * 180.02562 * 3 2 1 5 5 O 1.20822 * 119.99865 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99615 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.47534 * 59.99805 * 6 4 3 8 8 C 1.52995 * 109.46911 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47379 * 179.97438 * 8 6 4 10 10 C 1.53010 * 109.47046 * 300.00384 * 9 8 6 11 11 F 1.39895 * 109.46902 * 299.99752 * 10 9 8 12 12 C 1.53001 * 109.47046 * 180.02562 * 10 9 8 13 13 S 1.81396 * 109.46932 * 184.99992 * 12 10 9 14 14 O 1.42098 * 110.54243 * 290.87016 * 13 12 10 15 15 O 1.42101 * 110.54494 * 67.61955 * 13 12 10 16 16 O 1.52198 * 104.44906 * 179.24409 * 13 12 10 17 17 C 1.35912 * 113.99741 * 73.63494 * 16 13 12 18 18 C 1.38708 * 120.46867 * 260.86884 * 17 16 13 19 19 C 1.50698 * 119.66184 * 0.02562 * 18 17 16 20 20 O 1.42903 * 109.47136 * 326.75298 * 19 18 17 21 21 Si 1.86296 * 109.47304 * 206.74911 * 19 18 17 22 22 N 1.31841 * 120.67690 * 179.70826 * 18 17 16 23 23 C 1.31847 * 121.78575 * 0.58497 * 22 18 17 24 24 C 1.38251 * 120.88178 * 359.70317 * 23 22 18 25 25 C 1.38529 * 119.22554 * 0.02562 * 24 23 22 26 26 C 1.52999 * 109.46837 * 59.99622 * 10 9 8 27 27 C 1.52993 * 109.47205 * 299.99624 * 6 4 3 28 28 H 1.09000 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47660 * 300.00132 * 1 2 3 30 30 H 1.09001 * 109.47057 * 60.00146 * 1 2 3 31 31 H 1.08991 * 109.47314 * 239.99944 * 2 1 3 32 32 H 1.09001 * 109.47175 * 119.99076 * 2 1 3 33 33 H 1.09001 * 109.47207 * 299.99987 * 8 6 4 34 34 H 1.09000 * 109.47367 * 60.00231 * 8 6 4 35 35 H 1.09001 * 109.47138 * 59.99753 * 9 8 6 36 36 H 1.09001 * 109.47519 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.46541 * 304.99745 * 12 10 9 38 38 H 1.08997 * 109.47352 * 64.99739 * 12 10 9 39 39 H 1.08999 * 109.46951 * 86.74730 * 19 18 17 40 40 H 0.96704 * 113.99779 * 299.99745 * 20 19 18 41 41 H 1.48500 * 109.99642 * 58.68407 * 21 19 18 42 42 H 1.48499 * 109.99802 * 179.97438 * 21 19 18 43 43 H 1.08000 * 119.55984 * 179.73199 * 23 22 18 44 44 H 1.08003 * 120.38839 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.81544 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.46983 * 60.00393 * 26 10 9 47 47 H 1.09001 * 109.46699 * 180.02562 * 26 10 9 48 48 H 1.09007 * 109.47509 * 300.00116 * 27 6 4 49 49 H 1.08998 * 109.47457 * 60.00425 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5850 3.4700 0.8887 8 6 5.4485 2.8575 -0.0010 9 6 6.0333 4.2713 -0.0023 10 6 5.5617 5.0172 -1.2523 11 9 5.9929 4.3332 -2.3939 12 6 6.1470 6.4308 -1.2539 13 16 5.4717 7.3633 -2.6556 14 8 5.9721 6.8508 -3.8829 15 8 4.0827 7.6015 -2.4732 16 8 6.1075 8.7410 -2.5370 17 6 7.4205 8.7757 -2.8865 18 6 8.4085 8.7434 -1.9135 19 6 8.0207 8.6686 -0.4591 20 8 6.7990 9.3811 -0.2547 21 14 9.3652 9.4296 0.5820 22 7 9.6834 8.7711 -2.2482 23 6 10.0696 8.8415 -3.5069 24 6 9.1431 8.8832 -4.5321 25 6 7.7926 8.8506 -4.2251 26 6 4.0338 5.0972 -1.2523 27 6 3.4487 3.6840 -1.2504 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.7844 2.3258 0.8892 34 1 5.7845 2.3250 -0.8908 35 1 5.6973 4.8043 0.8872 36 1 7.1218 4.2143 -0.0027 37 1 5.8849 6.9335 -0.3229 38 1 7.2318 6.3748 -1.3436 39 1 7.8854 7.6258 -0.1724 40 1 6.8460 10.3180 -0.4896 41 1 9.5811 10.8425 0.1790 42 1 8.9945 9.3627 2.0184 43 1 11.1238 8.8666 -3.7401 44 1 9.4683 8.9412 -5.5604 45 1 7.0469 8.8822 -5.0057 46 1 3.6979 5.6301 -0.3628 47 1 3.6978 5.6281 -2.1430 48 1 3.7844 3.1516 -2.1404 49 1 2.3602 3.7411 -1.2501 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_16464698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:32 Heat of formation + Delta-G solvation = -225.662434 kcal Electronic energy + Delta-G solvation = -39056.547303 eV Core-core repulsion = 33800.237539 eV Total energy + Delta-G solvation = -5256.309764 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.128 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.10169 -42.74979 -41.79771 -40.22347 -39.14563 -38.54461 -38.06731 -37.69025 -37.42074 -34.28771 -33.80048 -32.64857 -32.19978 -32.10111 -29.22346 -27.63210 -25.43099 -25.09975 -24.21565 -23.65761 -23.53576 -22.15587 -21.76187 -20.88343 -19.80883 -19.10312 -18.94409 -18.79396 -18.64415 -17.93224 -17.72163 -17.63549 -17.26415 -17.05200 -16.84393 -16.60833 -16.35899 -16.08994 -15.55439 -15.32562 -15.05948 -14.93989 -14.91224 -14.69189 -14.54807 -14.33223 -14.23591 -14.10915 -13.91199 -13.75188 -13.70402 -13.60663 -13.51598 -13.40954 -13.23285 -13.20248 -13.15422 -12.93374 -12.75586 -12.57902 -12.46933 -12.21853 -12.02637 -11.98131 -11.76249 -11.57462 -11.38054 -11.26743 -11.18390 -10.94235 -10.79740 -10.11551 -4.74451 -1.30645 -0.33838 -0.11038 0.81449 1.05349 1.25112 1.58861 1.71128 1.94466 2.26628 2.36899 2.64466 2.79466 2.80740 3.01620 3.06550 3.24756 3.32554 3.45037 3.51564 3.62084 3.67597 3.75490 3.77603 3.81966 3.94589 3.98045 4.00169 4.02061 4.12559 4.18519 4.27940 4.29399 4.29733 4.40750 4.52937 4.54947 4.59449 4.76991 4.77454 4.78373 4.86939 4.87924 4.90388 4.92321 4.99330 5.07058 5.11492 5.23972 5.39270 5.41450 6.26961 6.55351 6.62028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.465 3.535 5 O -0.538 6.538 6 C -0.078 4.078 7 H 0.146 0.854 8 C -0.109 4.109 9 C -0.123 4.123 10 C 0.128 3.872 11 F -0.210 7.210 12 C -0.668 4.668 13 S 2.591 3.409 14 O -0.974 6.974 15 O -0.950 6.950 16 O -0.643 6.643 17 C -0.003 4.003 18 C 0.099 3.901 19 C -0.107 4.107 20 O -0.532 6.532 21 Si 0.801 3.199 22 N -0.460 5.460 23 C 0.131 3.869 24 C -0.147 4.147 25 C -0.068 4.068 26 C -0.177 4.177 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.197 0.803 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.393 0.607 41 H -0.303 1.303 42 H -0.285 1.285 43 H 0.214 0.786 44 H 0.185 0.815 45 H 0.152 0.848 46 H 0.131 0.869 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 1.950 2.414 5.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.428 6.428 6 C -0.097 4.097 7 H 0.163 0.837 8 C -0.146 4.146 9 C -0.161 4.161 10 C 0.109 3.891 11 F -0.191 7.191 12 C -0.796 4.796 13 S 2.690 3.310 14 O -0.973 6.973 15 O -0.948 6.948 16 O -0.601 6.601 17 C -0.047 4.047 18 C -0.041 4.041 19 C -0.215 4.215 20 O -0.340 6.340 21 Si 0.704 3.296 22 N -0.173 5.173 23 C -0.026 4.026 24 C -0.166 4.166 25 C -0.095 4.095 26 C -0.214 4.214 27 C -0.147 4.147 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.214 0.786 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.243 0.757 41 H -0.230 1.230 42 H -0.212 1.212 43 H 0.231 0.769 44 H 0.202 0.798 45 H 0.170 0.830 46 H 0.149 0.851 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.062 1.972 3.259 6.335 hybrid contribution -1.606 0.250 -1.213 2.028 sum 3.456 2.222 2.046 4.590 Atomic orbital electron populations 1.21826 0.90670 1.04260 1.03765 1.23252 0.96936 0.79379 1.02440 1.86517 1.24220 1.33448 1.83451 1.24207 0.80600 0.93174 0.71087 1.90670 1.61120 1.44369 1.46644 1.21288 0.96739 0.88636 1.03027 0.83678 1.21464 0.91544 0.97484 1.04143 1.22179 1.03433 0.94552 0.95981 1.20791 0.94762 0.87969 0.85621 1.92937 1.91310 1.81575 1.53246 1.31624 1.15379 1.08660 1.23977 1.05476 0.74905 0.73815 0.76802 1.93622 1.80678 1.79933 1.43027 1.93617 1.30916 1.82838 1.87415 1.85711 1.30203 1.56405 1.87732 1.19117 0.78494 1.12341 0.94736 1.22202 0.88629 0.96376 0.96931 1.25644 0.97205 1.05329 0.93352 1.86511 1.31748 1.27749 1.87949 0.92672 0.82852 0.80166 0.73862 1.67208 1.14536 1.13198 1.22359 1.23781 1.03120 0.89694 0.86008 1.22657 0.90890 0.98868 1.04164 1.22311 0.99660 0.92790 0.94762 1.22772 0.92358 0.99267 1.07037 1.21445 1.02789 0.94021 0.96402 0.88577 0.91060 0.91386 0.91708 0.91190 0.89185 0.92265 0.85764 0.87743 0.78572 0.81466 0.82266 0.75719 1.22965 1.21195 0.76931 0.79784 0.83029 0.85093 0.90740 0.92013 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 10.29 71.98 0.74 1.12 16 2 C 0.05 0.11 6.19 71.98 0.45 0.56 16 3 O -0.36 -1.59 10.12 -51.40 -0.52 -2.11 16 4 C 0.46 2.53 7.25 71.24 0.52 3.04 16 5 O -0.54 -6.34 15.73 21.97 0.35 -5.99 16 6 C -0.08 0.09 2.63 -11.54 -0.03 0.06 16 7 H 0.15 -1.05 8.14 -2.39 -0.02 -1.07 16 8 C -0.11 0.14 4.37 30.59 0.13 0.28 16 9 C -0.12 0.78 5.00 30.60 0.15 0.93 16 10 C 0.13 -0.13 0.89 -10.79 -0.01 -0.14 16 11 F -0.21 -1.26 15.36 44.97 0.69 -0.57 16 12 C -0.67 2.27 3.32 71.98 0.24 2.51 16 13 S 2.59 14.48 4.42 -56.49 -0.25 14.23 16 14 O -0.97 -10.37 15.51 -118.57 -1.84 -12.21 16 15 O -0.95 -10.39 15.58 -118.57 -1.85 -12.24 16 16 O -0.64 -2.55 7.94 -58.60 -0.47 -3.01 16 17 C 0.00 0.00 4.78 22.60 0.11 0.10 16 18 C 0.10 -0.18 5.49 42.67 0.23 0.05 16 19 C -0.11 0.50 1.75 71.24 0.12 0.63 16 20 O -0.53 1.57 10.32 -127.59 -1.32 0.26 16 21 Si 0.80 -3.09 31.83 68.60 2.18 -0.91 16 22 N -0.46 1.73 8.28 -183.51 -1.52 0.21 16 23 C 0.13 -1.00 11.18 84.69 0.95 -0.05 16 24 C -0.15 0.92 10.11 22.34 0.23 1.15 16 25 C -0.07 -0.01 8.71 22.56 0.20 0.19 16 26 C -0.18 0.03 4.31 30.58 0.13 0.17 16 27 C -0.11 -0.03 5.01 30.57 0.15 0.12 16 28 H 0.10 -0.53 8.14 -2.39 -0.02 -0.54 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 32 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 34 H 0.06 0.22 7.76 -2.39 -0.02 0.21 16 35 H 0.12 -1.53 8.14 -2.39 -0.02 -1.55 16 36 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H 0.20 -1.89 7.28 -2.39 -0.02 -1.91 16 38 H 0.17 -1.27 6.12 -2.39 -0.01 -1.29 16 39 H 0.16 -1.65 5.27 -2.39 -0.01 -1.66 16 40 H 0.39 -2.26 8.70 -74.05 -0.64 -2.91 16 41 H -0.30 -0.88 7.11 99.48 0.71 -0.17 16 42 H -0.28 -0.31 7.11 99.48 0.71 0.40 16 43 H 0.21 -3.29 8.06 -2.91 -0.02 -3.32 16 44 H 0.18 -2.32 8.06 -2.91 -0.02 -2.35 16 45 H 0.15 0.03 7.89 -2.91 -0.02 0.01 16 46 H 0.13 -0.77 8.14 -2.39 -0.02 -0.79 16 47 H 0.07 0.32 5.37 -2.39 -0.01 0.30 16 48 H 0.06 0.24 7.80 -2.38 -0.02 0.22 16 49 H 0.10 -0.12 8.11 -2.39 -0.02 -0.14 16 Total: 0.00 -29.57 402.36 0.16 -29.40 By element: Atomic # 1 Polarization: -18.16 SS G_CDS: 0.39 Total: -17.77 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.31 Total: 10.72 kcal Atomic # 7 Polarization: 1.73 SS G_CDS: -1.52 Total: 0.21 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -5.64 Total: -35.32 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.69 Total: -0.57 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.18 Total: -0.91 kcal Atomic # 16 Polarization: 14.48 SS G_CDS: -0.25 Total: 14.23 kcal Total: -29.57 0.16 -29.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_16464698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.258 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds