Wall clock time and date at job start Mon Mar 8 2021 09:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47044 * 2 1 4 4 C 1.34235 * 116.99529 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99704 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.85036 * 48.80421 * 6 4 3 8 8 C 1.53788 * 113.61429 * 180.02562 * 6 4 3 9 9 C 1.53785 * 87.07756 * 139.98166 * 8 6 4 10 10 F 1.39896 * 113.61410 * 89.20508 * 9 8 6 11 11 C 1.53008 * 113.61134 * 220.01737 * 9 8 6 12 12 S 1.81400 * 109.47173 * 178.47310 * 11 9 8 13 13 O 1.42097 * 110.54043 * 68.37599 * 12 11 9 14 14 O 1.42096 * 110.54006 * 291.62614 * 12 11 9 15 15 O 1.52196 * 104.44847 * 180.02562 * 12 11 9 16 16 C 1.35911 * 114.00054 * 74.99925 * 15 12 11 17 17 C 1.38708 * 120.47298 * 89.99519 * 16 15 12 18 18 C 1.50703 * 119.65798 * 0.02562 * 17 16 15 19 19 O 1.42896 * 109.47086 * 29.97106 * 18 17 16 20 20 Si 1.86295 * 109.47295 * 149.97493 * 18 17 16 21 21 N 1.31839 * 120.68587 * 179.97438 * 17 16 15 22 22 C 1.31854 * 121.78030 * 0.02562 * 21 17 16 23 23 C 1.38250 * 120.88231 * 0.02562 * 22 21 17 24 24 C 1.38526 * 119.22705 * 359.97438 * 23 22 21 25 25 C 1.53784 * 87.17663 * 334.60948 * 9 8 6 26 26 H 1.08999 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47321 * 300.00266 * 1 2 3 28 28 H 1.09004 * 109.46936 * 59.99703 * 1 2 3 29 29 H 1.09003 * 109.47321 * 239.99734 * 2 1 3 30 30 H 1.08997 * 109.46890 * 119.99889 * 2 1 3 31 31 H 1.09000 * 113.61028 * 25.43588 * 8 6 4 32 32 H 1.08995 * 113.61115 * 254.52765 * 8 6 4 33 33 H 1.09005 * 109.46749 * 58.47277 * 11 9 8 34 34 H 1.09002 * 109.46973 * 298.47703 * 11 9 8 35 35 H 1.09003 * 109.46606 * 269.97306 * 18 17 16 36 36 H 0.96707 * 113.99677 * 60.00292 * 19 18 17 37 37 H 1.48493 * 110.00299 * 180.02562 * 20 18 17 38 38 H 1.48503 * 109.99798 * 301.31808 * 20 18 17 39 39 H 1.08000 * 119.55594 * 179.72055 * 22 21 17 40 40 H 1.08008 * 120.38707 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.81638 * 179.97438 * 24 23 22 42 42 H 1.08999 * 113.61101 * 139.93929 * 25 9 8 43 43 H 1.09003 * 113.60824 * 270.84687 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4709 3.5818 0.7552 8 6 5.4583 2.9680 0.0001 9 6 5.3566 4.1420 -0.9880 10 9 5.2852 5.3931 -0.3663 11 6 6.3989 4.0932 -2.1071 12 16 6.1494 5.4980 -3.2274 13 8 6.4717 6.7188 -2.5756 14 8 4.9338 5.3510 -3.9483 15 8 7.2334 5.3383 -4.2838 16 6 6.9858 4.3518 -5.1852 17 6 6.2892 4.6247 -6.3532 18 6 5.8051 6.0262 -6.6226 19 8 6.6923 6.9629 -6.0083 20 14 5.7614 6.3257 -8.4608 21 7 6.0471 3.6710 -7.2307 22 6 6.4516 2.4310 -7.0379 23 6 7.1505 2.0818 -5.8974 24 6 7.4264 3.0532 -4.9492 25 6 3.9856 3.5787 -1.3981 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 5.9128 2.0747 -0.4285 32 1 5.8894 3.2434 0.9625 33 1 6.2918 3.1617 -2.6630 34 1 7.3983 4.1458 -1.6753 35 1 4.8036 6.1501 -6.2103 36 1 7.6035 6.9094 -6.3278 37 1 5.2862 7.7046 -8.7396 38 1 7.1146 6.1286 -9.0397 39 1 6.2296 1.6769 -7.7786 40 1 7.4777 1.0634 -5.7474 41 1 7.9703 2.8088 -4.0486 42 1 3.2297 4.3466 -1.5628 43 1 4.0369 2.8527 -2.2096 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_16464788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:30 Heat of formation + Delta-G solvation = -189.124875 kcal Electronic energy + Delta-G solvation = -34206.403261 eV Core-core repulsion = 29262.753122 eV Total energy + Delta-G solvation = -4943.650138 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.096 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.27985 -42.71908 -41.87891 -40.17179 -39.38483 -38.49220 -38.12733 -37.57006 -37.35113 -33.87163 -32.82514 -32.20001 -31.95394 -27.71986 -27.33973 -26.99330 -25.29572 -23.97008 -23.63632 -22.49780 -21.84311 -20.91338 -19.80800 -19.31379 -18.98155 -18.85238 -18.71012 -17.93622 -17.70135 -17.60239 -17.24018 -17.04695 -16.58186 -16.57008 -16.22984 -16.11782 -15.52900 -15.43869 -14.90074 -14.80130 -14.71083 -14.64671 -14.42203 -14.25337 -14.16357 -13.92238 -13.70112 -13.68879 -13.60625 -13.46672 -13.38177 -13.11650 -12.98880 -12.97116 -12.70664 -12.54141 -12.48023 -12.09441 -11.93471 -11.58239 -11.54943 -11.46706 -11.26862 -11.02436 -10.72301 -10.03956 -4.84245 -1.33078 -0.27661 -0.12067 0.86114 0.96006 1.22654 1.53469 1.61274 1.85491 2.33852 2.43276 2.58543 2.67267 2.73557 2.84041 2.85759 3.04769 3.12429 3.20029 3.48834 3.60452 3.65846 3.71804 3.81943 3.87986 3.97063 4.02567 4.05222 4.27111 4.30108 4.31524 4.32010 4.38240 4.49074 4.58189 4.60643 4.69966 4.78712 4.80733 4.87588 4.88899 4.97504 5.11851 5.38857 5.44599 6.25861 6.57383 6.62807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.479 3.521 5 O -0.527 6.527 6 C -0.110 4.110 7 H 0.147 0.853 8 C -0.112 4.112 9 C 0.089 3.911 10 F -0.190 7.190 11 C -0.661 4.661 12 S 2.592 3.408 13 O -0.960 6.960 14 O -0.960 6.960 15 O -0.647 6.647 16 C -0.003 4.003 17 C 0.114 3.886 18 C -0.112 4.112 19 O -0.545 6.545 20 Si 0.813 3.187 21 N -0.469 5.469 22 C 0.126 3.874 23 C -0.139 4.139 24 C -0.087 4.087 25 C -0.147 4.147 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.188 0.812 34 H 0.184 0.816 35 H 0.137 0.863 36 H 0.389 0.611 37 H -0.294 1.294 38 H -0.286 1.286 39 H 0.211 0.789 40 H 0.197 0.803 41 H 0.188 0.812 42 H 0.106 0.894 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -11.242 -1.720 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.322 3.678 5 O -0.416 6.416 6 C -0.129 4.129 7 H 0.165 0.835 8 C -0.150 4.150 9 C 0.069 3.931 10 F -0.171 7.171 11 C -0.789 4.789 12 S 2.690 3.310 13 O -0.958 6.958 14 O -0.958 6.958 15 O -0.605 6.605 16 C -0.047 4.047 17 C -0.025 4.025 18 C -0.220 4.220 19 O -0.353 6.353 20 Si 0.715 3.285 21 N -0.182 5.182 22 C -0.032 4.032 23 C -0.158 4.158 24 C -0.114 4.114 25 C -0.185 4.185 26 H 0.116 0.884 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.206 0.794 34 H 0.202 0.798 35 H 0.154 0.846 36 H 0.238 0.762 37 H -0.222 1.222 38 H -0.213 1.213 39 H 0.228 0.772 40 H 0.214 0.786 41 H 0.205 0.795 42 H 0.125 0.875 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.569 -9.888 -3.015 10.353 hybrid contribution 1.667 0.160 2.135 2.713 sum 1.097 -9.729 -0.880 9.830 Atomic orbital electron populations 1.21843 0.91004 1.04292 1.03654 1.23297 0.96753 0.79027 1.02861 1.86537 1.24127 1.33862 1.83251 1.23520 0.80710 0.92162 0.71364 1.90664 1.60938 1.43595 1.46398 1.22609 0.97765 0.91135 1.01426 0.83524 1.23611 0.93280 0.97187 1.00923 1.21445 0.96195 0.81783 0.93640 1.92984 1.97136 1.42949 1.83992 1.31321 1.11015 1.23520 1.13022 1.05517 0.73571 0.76707 0.75214 1.93609 1.83218 1.42655 1.76319 1.93587 1.47145 1.87147 1.67960 1.85744 1.66958 1.58324 1.49465 1.19147 1.06867 0.86953 0.91736 1.21974 0.93459 0.97197 0.89892 1.25637 0.97014 0.84390 1.14929 1.86588 1.24093 1.57798 1.66783 0.92807 0.84027 0.80164 0.71541 1.67124 1.19949 1.02059 1.29091 1.23874 0.90136 0.92113 0.97029 1.22715 0.97935 1.02362 0.92783 1.22449 0.96623 0.89203 1.03130 1.23917 0.95695 1.01991 0.96887 0.88426 0.91508 0.91296 0.90749 0.91153 0.84852 0.87116 0.79419 0.79788 0.84571 0.76176 1.22160 1.21257 0.77231 0.78599 0.79477 0.87503 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.73 10.29 71.98 0.74 1.47 16 2 C 0.05 -0.07 6.19 71.98 0.45 0.37 16 3 O -0.36 -0.60 10.22 -51.47 -0.53 -1.13 16 4 C 0.48 0.63 7.49 71.24 0.53 1.17 16 5 O -0.53 -2.85 15.65 21.98 0.34 -2.51 16 6 C -0.11 0.31 4.24 -10.95 -0.05 0.26 16 7 H 0.15 -0.71 8.14 -2.39 -0.02 -0.73 16 8 C -0.11 0.54 6.86 31.12 0.21 0.76 16 9 C 0.09 -0.13 1.60 -10.26 -0.02 -0.15 16 10 F -0.19 -1.05 16.35 44.97 0.74 -0.32 16 11 C -0.66 3.29 5.20 71.98 0.37 3.67 16 12 S 2.59 16.55 4.71 -56.49 -0.27 16.28 16 13 O -0.96 -15.65 17.57 -118.57 -2.08 -17.74 16 14 O -0.96 -8.76 14.70 -118.57 -1.74 -10.50 16 15 O -0.65 -2.86 7.88 -58.53 -0.46 -3.32 16 16 C 0.00 0.00 4.68 22.60 0.11 0.10 16 17 C 0.11 0.35 5.50 42.67 0.23 0.59 16 18 C -0.11 -0.72 2.10 71.24 0.15 -0.57 16 19 O -0.55 -5.06 10.49 -127.13 -1.33 -6.40 16 20 Si 0.81 2.66 31.89 68.60 2.19 4.85 16 21 N -0.47 0.47 8.37 -183.50 -1.54 -1.07 16 22 C 0.13 -1.11 11.18 84.69 0.95 -0.16 16 23 C -0.14 1.69 10.11 22.34 0.23 1.92 16 24 C -0.09 0.73 8.61 22.56 0.19 0.93 16 25 C -0.15 0.41 7.09 31.18 0.22 0.63 16 26 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.07 -0.15 8.13 -2.39 -0.02 -0.17 16 30 H 0.07 -0.08 8.13 -2.39 -0.02 -0.10 16 31 H 0.13 -0.96 7.39 -2.39 -0.02 -0.98 16 32 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.19 -2.40 6.45 -2.39 -0.02 -2.41 16 34 H 0.18 -1.94 8.14 -2.39 -0.02 -1.96 16 35 H 0.14 1.08 7.04 -2.39 -0.02 1.07 16 36 H 0.39 1.22 8.70 -74.05 -0.64 0.57 16 37 H -0.29 -2.72 7.11 99.48 0.71 -2.01 16 38 H -0.29 -1.90 7.11 99.48 0.71 -1.20 16 39 H 0.21 -3.43 8.06 -2.91 -0.02 -3.45 16 40 H 0.20 -3.95 8.06 -2.91 -0.02 -3.98 16 41 H 0.19 -3.00 7.56 -2.91 -0.02 -3.03 16 42 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.13 -0.82 7.94 -2.39 -0.02 -0.83 16 Total: 0.00 -32.52 377.63 0.10 -32.42 By element: Atomic # 1 Polarization: -22.02 SS G_CDS: 0.46 Total: -21.57 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 4.32 Total: 10.99 kcal Atomic # 7 Polarization: 0.47 SS G_CDS: -1.54 Total: -1.07 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -5.80 Total: -41.58 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.74 Total: -0.32 kcal Atomic # 14 Polarization: 2.66 SS G_CDS: 2.19 Total: 4.85 kcal Atomic # 16 Polarization: 16.55 SS G_CDS: -0.27 Total: 16.28 kcal Total: -32.52 0.10 -32.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_16464788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.700 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds