Wall clock time and date at job start Mon Mar 8 2021 10:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99941 * 2 1 4 4 C 1.52998 * 112.90819 * 293.21142 * 3 2 1 5 5 F 1.39900 * 109.46979 * 194.86739 * 4 3 2 6 6 F 1.39906 * 109.47109 * 314.86602 * 4 3 2 7 7 F 1.39898 * 109.47166 * 74.86690 * 4 3 2 8 8 C 1.53779 * 113.61156 * 161.95825 * 3 2 1 9 9 C 1.53777 * 87.08323 * 270.88519 * 8 3 2 10 10 H 1.09005 * 113.69590 * 220.01343 * 9 8 3 11 11 C 1.53005 * 113.61446 * 89.11733 * 9 8 3 12 12 S 1.81399 * 109.46927 * 87.50649 * 11 9 8 13 13 O 1.42099 * 110.54728 * 68.37340 * 12 11 9 14 14 O 1.42098 * 110.54213 * 291.62456 * 12 11 9 15 15 O 1.52200 * 104.44966 * 180.02562 * 12 11 9 16 16 C 1.35907 * 114.00316 * 75.24622 * 15 12 11 17 17 C 1.38703 * 120.47148 * 95.25745 * 16 15 12 18 18 C 1.50696 * 119.66269 * 0.02562 * 17 16 15 19 19 O 1.42900 * 109.47119 * 234.25466 * 18 17 16 20 20 Si 1.86295 * 109.47257 * 114.24715 * 18 17 16 21 21 N 1.31848 * 120.68068 * 179.97438 * 17 16 15 22 22 C 1.31845 * 121.78085 * 0.02562 * 21 17 16 23 23 C 1.38256 * 120.88898 * 359.97438 * 22 21 17 24 24 C 1.38533 * 119.21677 * 0.02562 * 23 22 21 25 25 C 1.53783 * 113.61055 * 64.46208 * 3 2 1 26 26 H 1.09001 * 109.47221 * 182.41172 * 1 2 3 27 27 H 1.08997 * 109.47009 * 302.40885 * 1 2 3 28 28 H 1.09005 * 109.47273 * 62.41158 * 1 2 3 29 29 H 1.09006 * 113.61207 * 156.33998 * 8 3 2 30 30 H 1.08994 * 113.61765 * 25.43886 * 8 3 2 31 31 H 1.08993 * 109.47077 * 327.50245 * 11 9 8 32 32 H 1.09002 * 109.47030 * 207.50577 * 11 9 8 33 33 H 1.08997 * 109.46691 * 354.24889 * 18 17 16 34 34 H 0.96696 * 114.00562 * 65.38991 * 19 18 17 35 35 H 1.48505 * 109.99957 * 178.68210 * 20 18 17 36 36 H 1.48499 * 110.00205 * 300.00322 * 20 18 17 37 37 H 1.08007 * 119.55568 * 179.72115 * 22 21 17 38 38 H 1.07999 * 120.39009 * 179.97438 * 23 22 21 39 39 H 1.08007 * 120.81001 * 179.97438 * 24 23 22 40 40 H 1.08997 * 113.61913 * 334.56821 * 25 3 2 41 41 H 1.09006 * 113.68653 * 203.67184 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7450 2.0755 -1.2952 5 9 2.6046 3.1769 -1.3673 6 9 1.9701 1.2358 -2.3914 7 9 0.4179 2.5179 -1.3114 8 6 3.4847 1.3233 0.4364 9 6 2.9746 1.4923 1.8772 10 1 3.5634 2.1914 2.4712 11 6 2.7223 0.1662 2.5976 12 16 4.2550 -0.3917 3.3914 13 8 4.6011 0.4689 4.4678 14 8 5.2161 -0.7642 2.4133 15 8 3.8781 -1.7035 4.0650 16 6 3.7439 -2.7477 3.2056 17 6 4.8030 -3.6150 2.9819 18 6 6.1105 -3.3961 3.6984 19 8 7.1710 -3.3254 2.7433 20 14 6.4219 -4.8117 4.8688 21 7 4.6772 -4.6297 2.1494 22 6 3.5527 -4.8607 1.5010 23 6 2.4533 -4.0400 1.6721 24 6 2.5423 -2.9621 2.5377 25 6 1.7058 2.1153 1.2714 26 1 -0.3634 -1.0268 0.0432 27 1 -0.3633 0.5508 0.8676 28 1 -0.3634 0.4759 -0.9108 29 1 4.0394 2.1853 0.0657 30 1 4.0024 0.3797 0.2643 31 1 2.3932 -0.5820 1.8766 32 1 1.9507 0.3052 3.3548 33 1 6.0649 -2.4633 4.2604 34 1 7.1183 -2.5616 2.1527 35 1 7.7236 -4.6236 5.5583 36 1 5.3258 -4.8959 5.8671 37 1 3.4908 -5.7000 0.8240 38 1 1.5362 -4.2364 1.1366 39 1 1.6995 -2.3041 2.6904 40 1 0.7874 1.8110 1.7735 41 1 1.7736 3.1940 1.1303 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10177738_17541816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:48 Heat of formation + Delta-G solvation = -245.703838 kcal Electronic energy + Delta-G solvation = -36598.974319 eV Core-core repulsion = 31160.871114 eV Total energy + Delta-G solvation = -5438.103205 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.078 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.29157 -48.84006 -48.71983 -42.84091 -41.75493 -40.32800 -38.49479 -37.69660 -37.63407 -37.31976 -33.87085 -32.42892 -32.02830 -28.73913 -28.08505 -27.68374 -27.11170 -25.55208 -23.89647 -23.50703 -22.17499 -20.99029 -20.17277 -19.76997 -19.56741 -19.44454 -19.15904 -18.92902 -18.47482 -17.79908 -17.48185 -17.03123 -16.86326 -16.65771 -16.17009 -16.06108 -15.83600 -15.72374 -15.63910 -15.49989 -15.24685 -15.12191 -15.05213 -14.91395 -14.85716 -14.76613 -14.58444 -14.38275 -13.96008 -13.80867 -13.71638 -13.58826 -13.49661 -13.40095 -13.35531 -13.26259 -12.67788 -12.52294 -12.37021 -12.11783 -11.81277 -11.73144 -11.50689 -11.20303 -11.06021 -10.68946 -10.24325 -4.78929 -1.37412 -0.41368 -0.27734 0.73513 1.35646 1.39871 1.68914 1.78548 1.98261 2.22537 2.30009 2.34814 2.45926 2.59926 2.63119 2.78975 2.87143 2.93486 3.09492 3.17471 3.29973 3.34330 3.46135 3.56890 3.65733 3.85206 3.87848 3.90567 3.99488 4.01884 4.08054 4.12160 4.18621 4.22370 4.30239 4.38534 4.41307 4.48150 4.50755 4.55576 4.60459 5.20680 5.39948 6.51690 6.64996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.333 6.333 3 C 0.042 3.958 4 C 0.438 3.562 5 F -0.173 7.173 6 F -0.172 7.172 7 F -0.181 7.181 8 C -0.125 4.125 9 C -0.092 4.092 10 H 0.111 0.889 11 C -0.644 4.644 12 S 2.587 3.413 13 O -0.917 6.917 14 O -0.943 6.943 15 O -0.658 6.658 16 C 0.018 3.982 17 C 0.134 3.866 18 C -0.075 4.075 19 O -0.518 6.518 20 Si 0.772 3.228 21 N -0.434 5.434 22 C 0.126 3.874 23 C -0.148 4.148 24 C -0.087 4.087 25 C -0.137 4.137 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.071 0.929 34 H 0.376 0.624 35 H -0.243 1.243 36 H -0.249 1.249 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -1.782 -1.431 6.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.251 6.251 3 C 0.000 4.000 4 C 0.384 3.616 5 F -0.155 7.155 6 F -0.154 7.154 7 F -0.162 7.162 8 C -0.162 4.162 9 C -0.112 4.112 10 H 0.129 0.871 11 C -0.770 4.770 12 S 2.683 3.317 13 O -0.915 6.915 14 O -0.942 6.942 15 O -0.616 6.616 16 C -0.026 4.026 17 C -0.006 4.006 18 C -0.183 4.183 19 O -0.323 6.323 20 Si 0.668 3.332 21 N -0.145 5.145 22 C -0.033 4.033 23 C -0.168 4.168 24 C -0.115 4.115 25 C -0.176 4.176 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.089 0.911 34 H 0.224 0.776 35 H -0.167 1.167 36 H -0.174 1.174 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.117 0.883 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.620 -3.236 -0.006 5.640 hybrid contribution -2.406 3.053 -0.819 3.973 sum -7.025 -0.183 -0.825 7.076 Atomic orbital electron populations 1.23187 0.79365 1.04417 1.01898 1.88031 1.21236 1.21982 1.93877 1.23915 0.99647 0.86437 0.90037 1.21091 0.74302 0.78668 0.87572 1.93191 1.70202 1.55423 1.96659 1.93232 1.94232 1.70867 1.57026 1.93194 1.35881 1.90226 1.96905 1.23478 0.91776 1.06960 0.93962 1.21713 0.99437 0.94081 0.95958 0.87081 1.30888 1.24045 1.08063 1.14000 1.05781 0.76901 0.74203 0.74842 1.93686 1.81367 1.64293 1.52184 1.93626 1.57500 1.79434 1.63598 1.85749 1.90206 1.33410 1.52241 1.18911 0.96898 0.91291 0.95520 1.22014 0.95344 0.89892 0.93377 1.25540 0.84605 1.10752 0.97439 1.86705 1.44904 1.51867 1.48826 0.92213 0.80787 0.85595 0.74651 1.67655 1.25252 1.16319 1.05226 1.23258 0.87284 0.97799 0.94931 1.22215 1.01599 0.94495 0.98467 1.21912 0.95745 0.99065 0.94730 1.23601 0.99262 1.01168 0.93527 0.87888 0.92536 0.92490 0.85558 0.87292 0.83002 0.83441 0.91139 0.77567 1.16717 1.17372 0.80577 0.82696 0.82955 0.88302 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 10.36 101.05 1.05 1.02 16 2 O -0.33 0.65 8.38 -35.23 -0.30 0.35 16 3 C 0.04 -0.07 0.83 -89.81 -0.07 -0.15 16 4 C 0.44 0.02 2.55 37.16 0.09 0.11 16 5 F -0.17 -0.05 15.80 2.25 0.04 -0.02 16 6 F -0.17 -0.30 17.12 2.25 0.04 -0.27 16 7 F -0.18 -0.05 15.30 2.25 0.03 -0.01 16 8 C -0.12 0.26 6.89 -25.92 -0.18 0.08 16 9 C -0.09 0.26 3.84 -89.80 -0.35 -0.08 16 10 H 0.11 -0.42 8.13 -51.93 -0.42 -0.84 16 11 C -0.64 1.95 4.94 37.16 0.18 2.13 16 12 S 2.59 2.20 4.91 -107.50 -0.53 1.67 16 13 O -0.92 -3.87 18.09 -67.03 -1.21 -5.08 16 14 O -0.94 -1.97 15.42 -67.04 -1.03 -3.01 16 15 O -0.66 -0.86 8.92 -51.77 -0.46 -1.33 16 16 C 0.02 0.02 4.70 -39.08 -0.18 -0.17 16 17 C 0.13 0.29 4.65 -82.42 -0.38 -0.09 16 18 C -0.08 -0.23 2.19 36.00 0.08 -0.15 16 19 O -0.52 -1.78 12.60 -35.23 -0.44 -2.22 16 20 Si 0.77 1.42 33.06 -169.99 -5.62 -4.20 16 21 N -0.43 -0.49 9.69 -9.35 -0.09 -0.58 16 22 C 0.13 -0.27 11.18 -17.54 -0.20 -0.46 16 23 C -0.15 0.53 10.11 -39.47 -0.40 0.13 16 24 C -0.09 0.21 8.56 -39.14 -0.34 -0.13 16 25 C -0.14 0.48 6.53 -25.92 -0.17 0.31 16 26 H 0.10 -0.57 8.14 -51.93 -0.42 -0.99 16 27 H 0.06 -0.28 6.57 -51.93 -0.34 -0.62 16 28 H 0.06 -0.15 6.50 -51.93 -0.34 -0.49 16 29 H 0.13 -0.39 7.04 -51.93 -0.37 -0.76 16 30 H 0.11 -0.18 8.10 -51.93 -0.42 -0.60 16 31 H 0.15 -0.59 4.15 -51.93 -0.22 -0.80 16 32 H 0.15 -0.82 8.14 -51.92 -0.42 -1.24 16 33 H 0.07 0.22 6.41 -51.93 -0.33 -0.11 16 34 H 0.38 0.73 8.73 45.56 0.40 1.13 16 35 H -0.24 -0.87 7.11 56.52 0.40 -0.47 16 36 H -0.25 -0.72 7.11 56.52 0.40 -0.32 16 37 H 0.18 -0.93 8.06 -52.48 -0.42 -1.35 16 38 H 0.16 -1.05 8.06 -52.49 -0.42 -1.47 16 39 H 0.15 -0.84 6.99 -52.48 -0.37 -1.21 16 40 H 0.10 -0.47 6.60 -51.93 -0.34 -0.81 16 41 H 0.12 -0.49 8.01 -51.93 -0.42 -0.91 16 LS Contribution 360.46 15.07 5.43 5.43 Total: 0.00 -9.53 360.46 -9.06 -18.59 By element: Atomic # 1 Polarization: -7.83 SS G_CDS: -4.05 Total: -11.88 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -0.86 Total: 2.55 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -0.09 Total: -0.58 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -3.45 Total: -11.28 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.11 Total: -0.30 kcal Atomic # 14 Polarization: 1.42 SS G_CDS: -5.62 Total: -4.20 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -0.53 Total: 1.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -9.53 -9.06 -18.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_17541816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.118 kcal (2) G-P(sol) polarization free energy of solvation -9.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds