Wall clock time and date at job start Mon Mar 8 2021 10:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99941 * 2 1 4 4 C 1.52998 * 112.90819 * 293.21142 * 3 2 1 5 5 F 1.39900 * 109.46979 * 194.86739 * 4 3 2 6 6 F 1.39906 * 109.47109 * 314.86602 * 4 3 2 7 7 F 1.39898 * 109.47166 * 74.86690 * 4 3 2 8 8 C 1.53779 * 113.61156 * 161.95825 * 3 2 1 9 9 C 1.53777 * 87.08323 * 270.88519 * 8 3 2 10 10 H 1.09005 * 113.69590 * 220.01343 * 9 8 3 11 11 C 1.53005 * 113.61446 * 89.11733 * 9 8 3 12 12 S 1.81399 * 109.46927 * 87.50649 * 11 9 8 13 13 O 1.42099 * 110.54728 * 68.37340 * 12 11 9 14 14 O 1.42098 * 110.54213 * 291.62456 * 12 11 9 15 15 O 1.52200 * 104.44966 * 180.02562 * 12 11 9 16 16 C 1.35907 * 114.00316 * 75.24622 * 15 12 11 17 17 C 1.38703 * 120.47148 * 95.25745 * 16 15 12 18 18 C 1.50696 * 119.66269 * 0.02562 * 17 16 15 19 19 O 1.42900 * 109.47119 * 234.25466 * 18 17 16 20 20 Si 1.86295 * 109.47257 * 114.24715 * 18 17 16 21 21 N 1.31848 * 120.68068 * 179.97438 * 17 16 15 22 22 C 1.31845 * 121.78085 * 0.02562 * 21 17 16 23 23 C 1.38256 * 120.88898 * 359.97438 * 22 21 17 24 24 C 1.38533 * 119.21677 * 0.02562 * 23 22 21 25 25 C 1.53783 * 113.61055 * 64.46208 * 3 2 1 26 26 H 1.09001 * 109.47221 * 182.41172 * 1 2 3 27 27 H 1.08997 * 109.47009 * 302.40885 * 1 2 3 28 28 H 1.09005 * 109.47273 * 62.41158 * 1 2 3 29 29 H 1.09006 * 113.61207 * 156.33998 * 8 3 2 30 30 H 1.08994 * 113.61765 * 25.43886 * 8 3 2 31 31 H 1.08993 * 109.47077 * 327.50245 * 11 9 8 32 32 H 1.09002 * 109.47030 * 207.50577 * 11 9 8 33 33 H 1.08997 * 109.46691 * 354.24889 * 18 17 16 34 34 H 0.96696 * 114.00562 * 65.38991 * 19 18 17 35 35 H 1.48505 * 109.99957 * 178.68210 * 20 18 17 36 36 H 1.48499 * 110.00205 * 300.00322 * 20 18 17 37 37 H 1.08007 * 119.55568 * 179.72115 * 22 21 17 38 38 H 1.07999 * 120.39009 * 179.97438 * 23 22 21 39 39 H 1.08007 * 120.81001 * 179.97438 * 24 23 22 40 40 H 1.08997 * 113.61913 * 334.56821 * 25 3 2 41 41 H 1.09006 * 113.68653 * 203.67184 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7450 2.0755 -1.2952 5 9 2.6046 3.1769 -1.3673 6 9 1.9701 1.2358 -2.3914 7 9 0.4179 2.5179 -1.3114 8 6 3.4847 1.3233 0.4364 9 6 2.9746 1.4923 1.8772 10 1 3.5634 2.1914 2.4712 11 6 2.7223 0.1662 2.5976 12 16 4.2550 -0.3917 3.3914 13 8 4.6011 0.4689 4.4678 14 8 5.2161 -0.7642 2.4133 15 8 3.8781 -1.7035 4.0650 16 6 3.7439 -2.7477 3.2056 17 6 4.8030 -3.6150 2.9819 18 6 6.1105 -3.3961 3.6984 19 8 7.1710 -3.3254 2.7433 20 14 6.4219 -4.8117 4.8688 21 7 4.6772 -4.6297 2.1494 22 6 3.5527 -4.8607 1.5010 23 6 2.4533 -4.0400 1.6721 24 6 2.5423 -2.9621 2.5377 25 6 1.7058 2.1153 1.2714 26 1 -0.3634 -1.0268 0.0432 27 1 -0.3633 0.5508 0.8676 28 1 -0.3634 0.4759 -0.9108 29 1 4.0394 2.1853 0.0657 30 1 4.0024 0.3797 0.2643 31 1 2.3932 -0.5820 1.8766 32 1 1.9507 0.3052 3.3548 33 1 6.0649 -2.4633 4.2604 34 1 7.1183 -2.5616 2.1527 35 1 7.7236 -4.6236 5.5583 36 1 5.3258 -4.8959 5.8671 37 1 3.4908 -5.7000 0.8240 38 1 1.5362 -4.2364 1.1366 39 1 1.6995 -2.3041 2.6904 40 1 0.7874 1.8110 1.7735 41 1 1.7736 3.1940 1.1303 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10177738_17541816.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:47 Heat of formation + Delta-G solvation = -248.083024 kcal Electronic energy + Delta-G solvation = -36599.077488 eV Core-core repulsion = 31160.871114 eV Total energy + Delta-G solvation = -5438.206374 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.078 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -51.27863 -48.81854 -48.74531 -42.76513 -41.51897 -40.24585 -38.58562 -37.84833 -37.47453 -37.31383 -33.72535 -32.34540 -31.84867 -28.45114 -27.94175 -27.67964 -26.82593 -25.41980 -23.76444 -23.45436 -22.10016 -20.80835 -20.08638 -19.72220 -19.55166 -19.39162 -19.12118 -18.90412 -18.48836 -17.72109 -17.26746 -17.00862 -16.73115 -16.46757 -16.25936 -15.88891 -15.69700 -15.65478 -15.61928 -15.38361 -15.18208 -15.05731 -14.97564 -14.91599 -14.80502 -14.74550 -14.39586 -14.23593 -14.12011 -13.92212 -13.60395 -13.53402 -13.46125 -13.30887 -13.20289 -12.95996 -12.39991 -12.39102 -12.26124 -12.18793 -11.90781 -11.65492 -11.51954 -11.08738 -10.84053 -10.59838 -10.14330 -4.98166 -1.32930 -0.30453 -0.09140 0.77920 1.19126 1.48509 1.49644 1.78111 2.04034 2.28094 2.42232 2.50885 2.57112 2.68030 2.79946 2.86680 3.06970 3.12150 3.21682 3.27237 3.46350 3.53552 3.62198 3.76580 3.82822 3.85787 3.99536 4.15760 4.27251 4.35057 4.35291 4.36811 4.43079 4.49954 4.55865 4.63204 4.71322 4.73198 4.81853 4.84333 4.87292 5.43968 5.68066 6.41577 6.69684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.340 6.340 3 C 0.042 3.958 4 C 0.432 3.568 5 F -0.178 7.178 6 F -0.187 7.187 7 F -0.183 7.183 8 C -0.135 4.135 9 C -0.099 4.099 10 H 0.118 0.882 11 C -0.619 4.619 12 S 2.579 3.421 13 O -0.964 6.964 14 O -0.967 6.967 15 O -0.667 6.667 16 C -0.004 4.004 17 C 0.107 3.893 18 C -0.093 4.093 19 O -0.529 6.529 20 Si 0.826 3.174 21 N -0.459 5.459 22 C 0.117 3.883 23 C -0.131 4.131 24 C -0.087 4.087 25 C -0.128 4.128 26 H 0.124 0.876 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.059 0.941 34 H 0.378 0.622 35 H -0.274 1.274 36 H -0.263 1.263 37 H 0.206 0.794 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.119 0.881 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.371 -2.146 -2.121 9.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.258 6.258 3 C -0.001 4.001 4 C 0.377 3.623 5 F -0.160 7.160 6 F -0.168 7.168 7 F -0.164 7.164 8 C -0.172 4.172 9 C -0.119 4.119 10 H 0.136 0.864 11 C -0.749 4.749 12 S 2.680 3.320 13 O -0.962 6.962 14 O -0.965 6.965 15 O -0.625 6.625 16 C -0.048 4.048 17 C -0.033 4.033 18 C -0.200 4.200 19 O -0.335 6.335 20 Si 0.724 3.276 21 N -0.170 5.170 22 C -0.041 4.041 23 C -0.151 4.151 24 C -0.114 4.114 25 C -0.167 4.167 26 H 0.143 0.857 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.148 0.852 30 H 0.119 0.881 31 H 0.185 0.815 32 H 0.200 0.800 33 H 0.076 0.924 34 H 0.227 0.773 35 H -0.199 1.199 36 H -0.189 1.189 37 H 0.223 0.777 38 H 0.214 0.786 39 H 0.205 0.795 40 H 0.138 0.862 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.554 -3.608 -0.687 8.399 hybrid contribution -1.571 3.160 -0.717 3.601 sum -9.125 -0.448 -1.404 9.243 Atomic orbital electron populations 1.23411 0.78372 1.06010 1.01957 1.88023 1.22314 1.21652 1.93797 1.23992 0.99769 0.86832 0.89477 1.21515 0.74095 0.78624 0.88021 1.93176 1.70358 1.55736 1.96710 1.93196 1.94323 1.71287 1.58011 1.93185 1.36024 1.90278 1.96928 1.23589 0.91972 1.06842 0.94824 1.21814 1.00184 0.94312 0.95544 0.86389 1.30706 1.21359 1.08233 1.14621 1.05821 0.78298 0.73711 0.74211 1.93623 1.83086 1.65405 1.54125 1.93587 1.59719 1.79614 1.63604 1.85708 1.90334 1.33708 1.52780 1.19209 0.98021 0.91154 0.96410 1.21788 0.95192 0.91490 0.94823 1.25713 0.85795 1.10615 0.97895 1.86651 1.45638 1.52081 1.49086 0.91632 0.78058 0.84825 0.73125 1.67587 1.27185 1.16476 1.05778 1.23897 0.86837 0.98791 0.94567 1.22712 1.02397 0.92832 0.97114 1.22393 0.95313 0.99896 0.93818 1.23661 0.99530 1.01442 0.92039 0.85742 0.90838 0.93970 0.85160 0.88119 0.81533 0.80042 0.92353 0.77316 1.19944 1.18893 0.77694 0.78572 0.79466 0.86239 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.36 113.37 1.17 1.20 16 2 O -0.34 2.04 8.38 -148.98 -1.25 0.80 16 3 C 0.04 -0.20 0.83 -10.27 -0.01 -0.20 16 4 C 0.43 -0.11 2.55 71.98 0.18 0.08 16 5 F -0.18 -0.13 15.80 44.97 0.71 0.58 16 6 F -0.19 -0.71 17.12 44.97 0.77 0.06 16 7 F -0.18 0.02 15.30 44.97 0.69 0.71 16 8 C -0.14 0.59 6.89 31.12 0.21 0.80 16 9 C -0.10 0.68 3.84 -10.27 -0.04 0.65 16 10 H 0.12 -0.95 8.13 -2.38 -0.02 -0.97 16 11 C -0.62 4.80 4.94 71.98 0.36 5.16 16 12 S 2.58 7.01 4.91 -56.49 -0.28 6.73 16 13 O -0.96 -10.08 18.09 -118.57 -2.15 -12.23 16 14 O -0.97 -6.05 15.42 -118.57 -1.83 -7.88 16 15 O -0.67 -2.41 8.92 -61.60 -0.55 -2.95 16 16 C 0.00 -0.01 4.70 22.60 0.11 0.10 16 17 C 0.11 0.59 4.65 42.67 0.20 0.79 16 18 C -0.09 -0.81 2.19 71.23 0.16 -0.65 16 19 O -0.53 -5.12 12.60 -148.98 -1.88 -7.00 16 20 Si 0.83 4.85 33.06 68.60 2.27 7.12 16 21 N -0.46 -1.18 9.69 -183.50 -1.78 -2.96 16 22 C 0.12 -0.68 11.18 84.69 0.95 0.26 16 23 C -0.13 1.34 10.11 22.34 0.23 1.56 16 24 C -0.09 0.61 8.56 22.56 0.19 0.80 16 25 C -0.13 1.17 6.53 31.12 0.20 1.38 16 26 H 0.12 -1.82 8.14 -2.39 -0.02 -1.83 16 27 H 0.07 -0.99 6.57 -2.39 -0.02 -1.00 16 28 H 0.04 -0.28 6.50 -2.38 -0.02 -0.30 16 29 H 0.13 -0.75 7.04 -2.38 -0.02 -0.77 16 30 H 0.10 -0.28 8.10 -2.39 -0.02 -0.30 16 31 H 0.17 -1.73 4.15 -2.39 -0.01 -1.74 16 32 H 0.18 -2.62 8.14 -2.39 -0.02 -2.64 16 33 H 0.06 0.58 6.41 -2.39 -0.02 0.57 16 34 H 0.38 2.73 8.73 -74.06 -0.65 2.08 16 35 H -0.27 -2.77 7.11 99.48 0.71 -2.06 16 36 H -0.26 -2.03 7.11 99.48 0.71 -1.32 16 37 H 0.21 -2.65 8.06 -2.91 -0.02 -2.68 16 38 H 0.20 -3.66 8.06 -2.91 -0.02 -3.68 16 39 H 0.19 -2.82 6.99 -2.91 -0.02 -2.84 16 40 H 0.12 -1.58 6.60 -2.39 -0.02 -1.59 16 41 H 0.12 -1.29 8.01 -2.38 -0.02 -1.30 16 Total: 0.00 -26.65 360.46 -0.84 -27.49 By element: Atomic # 1 Polarization: -22.89 SS G_CDS: 0.51 Total: -22.38 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 3.91 Total: 11.91 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -1.78 Total: -2.96 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -7.65 Total: -29.26 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 2.17 Total: 1.35 kcal Atomic # 14 Polarization: 4.85 SS G_CDS: 2.27 Total: 7.12 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -0.28 Total: 6.73 kcal Total: -26.65 -0.84 -27.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10177738_17541816.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -220.593 kcal (2) G-P(sol) polarization free energy of solvation -26.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds